RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 SENP3-EIF4A1A0A087X0R7 540 aa22.56■■□□□ 1.2
CPSF1-207ENST00000531727 POLRMTO00411 1230 aaKnown RBP22.56■■□□□ 1.2
CPSF1-207ENST00000531727 PPP2R1AP30153 589 aa22.56■■□□□ 1.2
CPSF1-207ENST00000531727 PRKAR2BP31323 418 aa22.56■■□□□ 1.2
CPSF1-207ENST00000531727 PHACTR3Q96KR7 559 aa22.56■■□□□ 1.2
CPSF1-207ENST00000531727 NARFQ9UHQ1 456 aa22.56■■□□□ 1.2
CPSF1-207ENST00000531727 NUDCQ9Y266 331 aa22.56■■□□□ 1.2
CPSF1-207ENST00000531727 CEMIPQ8WUJ3 1361 aa22.55■■□□□ 1.2
CPSF1-207ENST00000531727 KCNA3P22001 575 aa22.55■■□□□ 1.2
CPSF1-207ENST00000531727 ZNF790Q6PG37 636 aa22.55■■□□□ 1.2
CPSF1-207ENST00000531727 GPBP1L1Q9HC44 474 aaPredicted RBP22.55■■□□□ 1.2
CPSF1-207ENST00000531727 ARFGEF1Q9Y6D6 1849 aa22.54■■□□□ 1.2
CPSF1-207ENST00000531727 FCHSD2O94868 740 aa22.54■■□□□ 1.2
CPSF1-207ENST00000531727 STARD3NLO95772 234 aa22.54■■□□□ 1.2
CPSF1-207ENST00000531727 HEG1Q9ULI3 1381 aa22.53■■□□□ 1.2
CPSF1-207ENST00000531727 ZNF496Q96IT1 587 aaPredicted RBP22.53■■□□□ 1.2
CPSF1-207ENST00000531727 AFDNP55196 1824 aaKnown RBP22.52■■□□□ 1.2
CPSF1-207ENST00000531727 NRXN2Q9P2S2 1712 aa22.52■■□□□ 1.2
CPSF1-207ENST00000531727 CANXP27824 592 aaKnown RBP22.52■■□□□ 1.2
CPSF1-207ENST00000531727 ZNF526Q8TF50 670 aaPredicted RBP22.52■■□□□ 1.2
CPSF1-207ENST00000531727 PIM2Q9P1W9 311 aa22.52■■□□□ 1.2
CPSF1-207ENST00000531727 U2AF1L5P0DN76 240 aaPredicted RBP22.51■■□□□ 1.19
CPSF1-207ENST00000531727 U2AF1Q01081 240 aaKnown RBP eCLIP22.51■■□□□ 1.19
CPSF1-207ENST00000531727 ARHGAP27Q6ZUM4 889 aa22.51■■□□□ 1.19
CPSF1-207ENST00000531727 TEX13AQ9BXU3 409 aaPredicted RBP22.51■■□□□ 1.19
CPSF1-207ENST00000531727 NFIXQ14938 502 aa22.5■■□□□ 1.19
CPSF1-207ENST00000531727 BCL2L12Q9HB09 334 aa22.5■■□□□ 1.19
CPSF1-207ENST00000531727 EIF5P55010 431 aaKnown RBP22.49■■□□□ 1.19
CPSF1-207ENST00000531727 FMNL2Q96PY5 1086 aa22.49■■□□□ 1.19
CPSF1-207ENST00000531727 A0A087WZG4 1122 aa22.48■■□□□ 1.19
CPSF1-207ENST00000531727 CHRNA5P30532 468 aa22.48■■□□□ 1.19
CPSF1-207ENST00000531727 DALRD3Q5D0E6 543 aaKnown RBP22.48■■□□□ 1.19
CPSF1-207ENST00000531727 SCN7AQ01118 1682 aa22.48■■□□□ 1.19
CPSF1-207ENST00000531727 BTBD11A6QL63 1104 aa22.47■■□□□ 1.19
CPSF1-207ENST00000531727 SERPINB2P05120 415 aa22.46■■□□□ 1.19
CPSF1-207ENST00000531727 DLEC1Q9Y238 1755 aa22.45■■□□□ 1.19
CPSF1-207ENST00000531727 KCNQ3O43525 872 aa22.45■■□□□ 1.18
CPSF1-207ENST00000531727 RTF1Q92541 710 aaKnown RBP22.45■■□□□ 1.18
CPSF1-207ENST00000531727 IL6STP40189 918 aaPredicted RBP22.44■■□□□ 1.18
CPSF1-207ENST00000531727 MCM10Q7L590 875 aa22.43■■□□□ 1.18
CPSF1-207ENST00000531727 HTATSF1O43719 755 aaKnown RBP22.42■■□□□ 1.18
CPSF1-207ENST00000531727 A1BGP04217 495 aa22.42■■□□□ 1.18
CPSF1-207ENST00000531727 ZNF330Q9Y3S2 320 aaPredicted RBP22.42■■□□□ 1.18
CPSF1-207ENST00000531727 KIF3CO14782 793 aa22.41■■□□□ 1.18
CPSF1-207ENST00000531727 C9orf131Q5VYM1 1079 aa22.41■■□□□ 1.18
CPSF1-207ENST00000531727 BICDL1Q6ZP65 573 aa22.41■■□□□ 1.18
CPSF1-207ENST00000531727 TBC1D2BQ9UPU7 963 aa22.41■■□□□ 1.18
CPSF1-207ENST00000531727 BCORQ6W2J9 1755 aa22.4■■□□□ 1.18
CPSF1-207ENST00000531727 TBC1D9BQ66K14 1250 aa22.4■■□□□ 1.18
CPSF1-207ENST00000531727 CARMIL3Q8ND23 1372 aa22.39■■□□□ 1.18
CPSF1-207ENST00000531727 DCTN1Q14203 1278 aa22.39■■□□□ 1.17
CPSF1-207ENST00000531727 NPM2Q86SE8 214 aaKnown RBP22.39■■□□□ 1.17
CPSF1-207ENST00000531727 USP16Q9Y5T5 823 aa22.39■■□□□ 1.17
CPSF1-207ENST00000531727 ANKRD31Q8N7Z5 1873 aa22.38■■□□□ 1.17
CPSF1-207ENST00000531727 DLG5Q8TDM6 1919 aa22.37■■□□□ 1.17
CPSF1-207ENST00000531727 SBF1O95248 1867 aa22.37■■□□□ 1.17
CPSF1-207ENST00000531727 CAMTA2O94983 1202 aa22.37■■□□□ 1.17
CPSF1-207ENST00000531727 C2CD5Q86YS7 1000 aa22.37■■□□□ 1.17
CPSF1-207ENST00000531727 PRAMEF22A3QJZ6 481 aa22.36■■□□□ 1.17
CPSF1-207ENST00000531727 H0YIN7 160 aa22.36■■□□□ 1.17
CPSF1-207ENST00000531727 NEFMP07197 916 aa22.36■■□□□ 1.17
CPSF1-207ENST00000531727 SNRPA1P09661 255 aaKnown RBP22.36■■□□□ 1.17
CPSF1-207ENST00000531727 HSPA6P17066 643 aa22.35■■□□□ 1.17
CPSF1-207ENST00000531727 TAF7Q15545 349 aaPredicted RBP22.35■■□□□ 1.17
CPSF1-207ENST00000531727 DZIP3Q86Y13 1208 aaKnown RBP22.35■■□□□ 1.17
CPSF1-207ENST00000531727 TTLL6Q8N841 843 aa22.35■■□□□ 1.17
CPSF1-207ENST00000531727 RNF181Q9P0P0 153 aa22.35■■□□□ 1.17
CPSF1-207ENST00000531727 PRR5LQ6MZQ0 368 aa22.34■■□□□ 1.17
CPSF1-207ENST00000531727 COL11A2P13942 1736 aaPredicted RBP22.34■■□□□ 1.17
CPSF1-207ENST00000531727 PIP4K2AP48426 406 aaPredicted RBP22.33■■□□□ 1.17
CPSF1-207ENST00000531727 PLEKHF1Q96S99 279 aa22.33■■□□□ 1.17
CPSF1-207ENST00000531727 SETDB2Q96T68 719 aa22.33■■□□□ 1.17
CPSF1-207ENST00000531727 BRIP1Q9BX63 1249 aa22.33■■□□□ 1.17
CPSF1-207ENST00000531727 NMRK2Q9NPI5 230 aa22.33■■□□□ 1.17
CPSF1-207ENST00000531727 PDZRN3Q9UPQ7 1066 aa22.33■■□□□ 1.17
CPSF1-207ENST00000531727 LAMB4A4D0S4 1761 aa22.33■■□□□ 1.16
CPSF1-207ENST00000531727 PDE6BP35913 854 aa22.32■■□□□ 1.16
CPSF1-207ENST00000531727 KDM3BQ7LBC6 1761 aa22.32■■□□□ 1.16
CPSF1-207ENST00000531727 RASSF7Q02833 373 aa22.31■■□□□ 1.16
CPSF1-207ENST00000531727 CEP350Q5VT06 3117 aa22.31■■□□□ 1.16
CPSF1-207ENST00000531727 TOMM70O94826 608 aa22.3■■□□□ 1.16
CPSF1-207ENST00000531727 NFE2L2Q16236 605 aa22.3■■□□□ 1.16
CPSF1-207ENST00000531727 CLEC4GQ6UXB4 293 aa22.3■■□□□ 1.16
CPSF1-207ENST00000531727 CNBD1Q8NA66 436 aa22.3■■□□□ 1.16
CPSF1-207ENST00000531727 KDM2BQ8NHM5 1336 aa22.3■■□□□ 1.16
CPSF1-207ENST00000531727 NBPF26B4DH59 902 aa22.29■■□□□ 1.16
CPSF1-207ENST00000531727 NBPF10Q6P3W6 841 aaKnown RBP22.29■■□□□ 1.16
CPSF1-207ENST00000531727 CCDC24Q8N4L8 307 aa22.29■■□□□ 1.16
CPSF1-207ENST00000531727 NBPF15Q8N660 670 aa22.29■■□□□ 1.16
CPSF1-207ENST00000531727 PNISRQ8TF01 805 aaKnown RBP22.29■■□□□ 1.16
CPSF1-207ENST00000531727 ZNF622Q969S3 477 aaKnown RBP eCLIP22.29■■□□□ 1.16
CPSF1-207ENST00000531727 PNNQ9H307 717 aaKnown RBP22.29■■□□□ 1.16
CPSF1-207ENST00000531727 MIS18AQ9NYP9 233 aa22.29■■□□□ 1.16
CPSF1-207ENST00000531727 TNRC6CQ9HCJ0 1690 aaKnown RBP22.28■■□□□ 1.16
CPSF1-207ENST00000531727 NPHP1O15259 732 aa22.28■■□□□ 1.16
CPSF1-207ENST00000531727 LMNB1P20700 586 aa22.28■■□□□ 1.16
CPSF1-207ENST00000531727 ZNF652Q9Y2D9 606 aa22.28■■□□□ 1.16
CPSF1-207ENST00000531727 ZC3H4Q9UPT8 1303 aaKnown RBP22.28■■□□□ 1.16
CPSF1-207ENST00000531727 ST5P78524 1137 aa22.27■■□□□ 1.16
CPSF1-207ENST00000531727 MAPK8IP3Q9UPT6 1336 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms