RNA–Protein interactions for RNA: ENST00000529540.5

NR1H3-231, Transcript of nuclear receptor subfamily 1 group H member 3, human

TSL 2

Gene NR1H3, Length 1,673 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1H3-231	ENST00000529540	FAM182B	Q5T319	152 aa		18.41	■□□□□ 0.54
NR1H3-231	ENST00000529540	STK31	Q9BXU1	1019 aa		18.41	■□□□□ 0.54
NR1H3-231	ENST00000529540	KAT6B	Q8WYB5	2073 aa		18.4	■□□□□ 0.54
NR1H3-231	ENST00000529540	PALLD	Q8WX93	1383 aa		18.4	■□□□□ 0.54
NR1H3-231	ENST00000529540	ELL2	O00472	640 aa	Predicted RBP	18.4	■□□□□ 0.54
NR1H3-231	ENST00000529540	RARS	P54136	660 aa	Known RBP	18.4	■□□□□ 0.54
NR1H3-231	ENST00000529540	HDGFL1	Q5TGJ6	251 aa		18.4	■□□□□ 0.54
NR1H3-231	ENST00000529540	BRPF1	P55201	1214 aa	Predicted RBP	18.39	■□□□□ 0.53
NR1H3-231	ENST00000529540	NFKBIB	Q15653	356 aa		18.39	■□□□□ 0.53
NR1H3-231	ENST00000529540	ERBB4	Q15303	1308 aa		18.39	■□□□□ 0.53
NR1H3-231	ENST00000529540	KIF16B	Q96L93	1317 aa		18.39	■□□□□ 0.53
NR1H3-231	ENST00000529540	ZNF831	Q5JPB2	1677 aa		18.38	■□□□□ 0.53
NR1H3-231	ENST00000529540	PTCD1	O75127	700 aa	Known RBP	18.38	■□□□□ 0.53
NR1H3-231	ENST00000529540	KRT24	Q2M2I5	525 aa		18.38	■□□□□ 0.53
NR1H3-231	ENST00000529540	SMC4	Q9NTJ3	1288 aa		18.38	■□□□□ 0.53
NR1H3-231	ENST00000529540	BTAF1	O14981	1849 aa		18.38	■□□□□ 0.53
NR1H3-231	ENST00000529540	GSE1	Q14687	1217 aa		18.38	■□□□□ 0.53
NR1H3-231	ENST00000529540	IL27	Q8NEV9	243 aa		18.38	■□□□□ 0.53
NR1H3-231	ENST00000529540	RBM42	Q9BTD8	480 aa	Known RBP	18.38	■□□□□ 0.53
NR1H3-231	ENST00000529540	LAMB4	A4D0S4	1761 aa		18.37	■□□□□ 0.53
NR1H3-231	ENST00000529540	CIC	Q96RK0	1608 aa	Predicted RBP	18.37	■□□□□ 0.53
NR1H3-231	ENST00000529540	STARD3NL	O95772	234 aa		18.37	■□□□□ 0.53
NR1H3-231	ENST00000529540	LOC102724428	A0A0B4J2F2	783 aa		18.36	■□□□□ 0.53
NR1H3-231	ENST00000529540	SIK1	P57059	783 aa		18.36	■□□□□ 0.53
NR1H3-231	ENST00000529540	DBF4	Q9UBU7	674 aa	Predicted RBP	18.36	■□□□□ 0.53
NR1H3-231	ENST00000529540	DAXX	Q9UER7	740 aa	Predicted RBP	18.36	■□□□□ 0.53
NR1H3-231	ENST00000529540	TRIM37	O94972	964 aa		18.35	■□□□□ 0.53
NR1H3-231	ENST00000529540	SSH1	Q8WYL5	1049 aa		18.35	■□□□□ 0.53
NR1H3-231	ENST00000529540	IPO8	O15397	1037 aa	Known RBP	18.34	■□□□□ 0.53
NR1H3-231	ENST00000529540	EIF2S2	P20042	333 aa	Known RBP	18.34	■□□□□ 0.53
NR1H3-231	ENST00000529540	CANX	P27824	592 aa	Known RBP	18.33	■□□□□ 0.52
NR1H3-231	ENST00000529540	ATP6V1A	P38606	617 aa		18.33	■□□□□ 0.52
NR1H3-231	ENST00000529540	C5	P01031	1676 aa		18.33	■□□□□ 0.52
NR1H3-231	ENST00000529540	CACNA1F	O60840	1977 aa		18.32	■□□□□ 0.52
NR1H3-231	ENST00000529540	PLSCR1	O15162	318 aa		18.32	■□□□□ 0.52
NR1H3-231	ENST00000529540	SLC27A3	Q5K4L6	730 aa		18.32	■□□□□ 0.52
NR1H3-231	ENST00000529540	ARHGAP45	Q92619	1136 aa		18.32	■□□□□ 0.52
NR1H3-231	ENST00000529540	DDX21	Q9NR30	783 aa	Known RBP eCLIP	18.32	■□□□□ 0.52
NR1H3-231	ENST00000529540	HYPK	Q9NX55	129 aa		18.32	■□□□□ 0.52
NR1H3-231	ENST00000529540	PTPRC	P08575	1304 aa		18.32	■□□□□ 0.52
NR1H3-231	ENST00000529540	SLC4A2	P04920	1241 aa		18.31	■□□□□ 0.52
NR1H3-231	ENST00000529540	MRPL50	Q8N5N7	158 aa	Known RBP	18.31	■□□□□ 0.52
NR1H3-231	ENST00000529540	LY75	O60449	1722 aa		18.31	■□□□□ 0.52
NR1H3-231	ENST00000529540	BCAR3	O75815	825 aa		18.31	■□□□□ 0.52
NR1H3-231	ENST00000529540	SF3B2	Q13435	895 aa	Known RBP	18.31	■□□□□ 0.52
NR1H3-231	ENST00000529540	PDE3A	Q14432	1141 aa		18.31	■□□□□ 0.52
NR1H3-231	ENST00000529540	USP16	Q9Y5T5	823 aa		18.31	■□□□□ 0.52
NR1H3-231	ENST00000529540	ZKSCAN2	Q63HK3	967 aa		18.3	■□□□□ 0.52
NR1H3-231	ENST00000529540	CCDC125	Q86Z20	511 aa		18.3	■□□□□ 0.52
NR1H3-231	ENST00000529540	DNAJC10	Q8IXB1	793 aa		18.3	■□□□□ 0.52
NR1H3-231	ENST00000529540	BCL2L13	Q9BXK5	485 aa		18.3	■□□□□ 0.52
NR1H3-231	ENST00000529540	CHPF2	Q9P2E5	772 aa		18.3	■□□□□ 0.52
NR1H3-231	ENST00000529540	CCNL1	Q9UK58	526 aa	Predicted RBP	18.3	■□□□□ 0.52
NR1H3-231	ENST00000529540	RGPD3	A6NKT7	1758 aa	Predicted RBP	18.3	■□□□□ 0.52
NR1H3-231	ENST00000529540	RGPD4	Q7Z3J3	1758 aa		18.3	■□□□□ 0.52
NR1H3-231	ENST00000529540	PRAMEF22	A3QJZ6	481 aa		18.29	■□□□□ 0.52
NR1H3-231	ENST00000529540	PTF1A	Q7RTS3	328 aa		18.29	■□□□□ 0.52
NR1H3-231	ENST00000529540	TJP1	Q07157	1748 aa		18.29	■□□□□ 0.52
NR1H3-231	ENST00000529540	APBA3	O96018	575 aa		18.28	■□□□□ 0.52
NR1H3-231	ENST00000529540	NECTIN2	Q92692	538 aa		18.28	■□□□□ 0.52
NR1H3-231	ENST00000529540	SLC4A9	Q96Q91	983 aa		18.28	■□□□□ 0.52
NR1H3-231	ENST00000529540	API5	Q9BZZ5	524 aa	Known RBP	18.28	■□□□□ 0.52
NR1H3-231	ENST00000529540	CYP19A1	P11511	503 aa	Predicted RBP	18.28	■□□□□ 0.52
NR1H3-231	ENST00000529540	AAMP	Q13685	434 aa		18.28	■□□□□ 0.52
NR1H3-231	ENST00000529540	FRAT1	Q92837	279 aa	Predicted RBP	18.28	■□□□□ 0.52
NR1H3-231	ENST00000529540	TNS1	Q9HBL0	1735 aa	Known RBP	18.27	■□□□□ 0.52
NR1H3-231	ENST00000529540	DDX58	O95786	925 aa	Known RBP	18.27	■□□□□ 0.52
NR1H3-231	ENST00000529540	SLC4A3	P48751	1232 aa		18.27	■□□□□ 0.52
NR1H3-231	ENST00000529540	ATF7IP	Q6VMQ6	1270 aa		18.27	■□□□□ 0.52
NR1H3-231	ENST00000529540	FLII	Q13045	1269 aa		18.26	■□□□□ 0.51
NR1H3-231	ENST00000529540	NOB1	Q9ULX3	412 aa	Known RBP	18.26	■□□□□ 0.51
NR1H3-231	ENST00000529540	CNTNAP4	Q9C0A0	1308 aa		18.26	■□□□□ 0.51
NR1H3-231	ENST00000529540	RGS3	P49796	1198 aa		18.25	■□□□□ 0.51
NR1H3-231	ENST00000529540	RC3H1	Q5TC82	1133 aa	Known RBP	18.25	■□□□□ 0.51
NR1H3-231	ENST00000529540	CCDC87	Q9NVE4	849 aa		18.25	■□□□□ 0.51
NR1H3-231	ENST00000529540	COL5A3	P25940	1745 aa	Predicted RBP	18.25	■□□□□ 0.51
NR1H3-231	ENST00000529540	IL6ST	P40189	918 aa	Predicted RBP	18.25	■□□□□ 0.51
NR1H3-231	ENST00000529540	BAG6	P46379	1132 aa		18.25	■□□□□ 0.51
NR1H3-231	ENST00000529540	ITPK1	Q13572	414 aa		18.25	■□□□□ 0.51
NR1H3-231	ENST00000529540	PDIA6	Q15084	440 aa		18.25	■□□□□ 0.51
NR1H3-231	ENST00000529540	FTSJ3	Q8IY81	847 aa	Known RBP	18.25	■□□□□ 0.51
NR1H3-231	ENST00000529540	CRKL	P46109	303 aa	Known RBP	18.24	■□□□□ 0.51
NR1H3-231	ENST00000529540	FKBP5	Q13451	457 aa	Predicted RBP	18.24	■□□□□ 0.51
NR1H3-231	ENST00000529540	A1BG	P04217	495 aa		18.23	■□□□□ 0.51
NR1H3-231	ENST00000529540	TXNRD1	Q16881	649 aa		18.23	■□□□□ 0.51
NR1H3-231	ENST00000529540	RREB1	Q92766	1687 aa		18.23	■□□□□ 0.51
NR1H3-231	ENST00000529540	EP400	Q96L91	3159 aa		18.22	■□□□□ 0.51
NR1H3-231	ENST00000529540	MYL6B	P14649	208 aa		18.22	■□□□□ 0.51
NR1H3-231	ENST00000529540	DZIP1L	Q8IYY4	767 aa	Known RBP	18.22	■□□□□ 0.51
NR1H3-231	ENST00000529540	IGHD	P01880	384 aa		18.22	■□□□□ 0.51
NR1H3-231	ENST00000529540	TRIM27	P14373	513 aa		18.22	■□□□□ 0.51
NR1H3-231	ENST00000529540	CLUAP1	Q96AJ1	413 aa		18.22	■□□□□ 0.51
NR1H3-231	ENST00000529540	NBPF26	B4DH59	902 aa		18.21	■□□□□ 0.51
NR1H3-231	ENST00000529540	PROSER3	Q2NL68	480 aa		18.21	■□□□□ 0.51
NR1H3-231	ENST00000529540	NBPF14	Q5TI25	921 aa		18.21	■□□□□ 0.51
NR1H3-231	ENST00000529540	NBPF10	Q6P3W6	841 aa	Known RBP	18.21	■□□□□ 0.51
NR1H3-231	ENST00000529540	LRP10	Q7Z4F1	713 aa		18.21	■□□□□ 0.51
NR1H3-231	ENST00000529540	NBPF15	Q8N660	670 aa		18.21	■□□□□ 0.51
NR1H3-231	ENST00000529540	LINC00116	Q8NCU8	138 aa		18.21	■□□□□ 0.51
NR1H3-231	ENST00000529540	CHMP4B	Q9H444	224 aa	Known RBP	18.21	■□□□□ 0.51

Retrieved 100 of 20,778 RNA–protein pairs in 35 ms