RNA–Protein interactions for RNA: ENST00000527020.5

USH1C-205, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,159 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-205ENST00000527020 AOX1Q06278 1338 aa21.55■■□□□ 1.04
USH1C-205ENST00000527020 CHMLP26374 656 aa21.55■■□□□ 1.04
USH1C-205ENST00000527020 CLEC17AQ6ZS10 378 aa21.55■■□□□ 1.04
USH1C-205ENST00000527020 LMTK3Q96Q04 1460 aa21.55■■□□□ 1.04
USH1C-205ENST00000527020 PROSER2Q86WR7 435 aaPredicted RBP21.54■■□□□ 1.04
USH1C-205ENST00000527020 CHMP4AQ9BY43 222 aa21.54■■□□□ 1.04
USH1C-205ENST00000527020 GOLGA6L3A6NEY3 463 aa21.53■■□□□ 1.04
USH1C-205ENST00000527020 RAB11FIP3O75154 756 aa21.53■■□□□ 1.04
USH1C-205ENST00000527020 GIGYF1O75420 1035 aaPredicted RBP21.53■■□□□ 1.04
USH1C-205ENST00000527020 ST18O60284 1047 aa21.53■■□□□ 1.04
USH1C-205ENST00000527020 SURF6O75683 361 aaKnown RBP21.53■■□□□ 1.04
USH1C-205ENST00000527020 PROSER3Q2NL68 480 aa21.53■■□□□ 1.04
USH1C-205ENST00000527020 DBF4Q9UBU7 674 aaPredicted RBP21.53■■□□□ 1.04
USH1C-205ENST00000527020 CRYBG1Q9Y4K1 1723 aa21.52■■□□□ 1.04
USH1C-205ENST00000527020 TRIM6-TRIM34B2RNG4 842 aa21.52■■□□□ 1.04
USH1C-205ENST00000527020 SRGAP3O43295 1099 aa21.52■■□□□ 1.04
USH1C-205ENST00000527020 XRCC6P12956 609 aaKnown RBP eCLIP21.52■■□□□ 1.04
USH1C-205ENST00000527020 NUTM1Q86Y26 1132 aa21.52■■□□□ 1.04
USH1C-205ENST00000527020 RILPL2Q969X0 211 aa21.52■■□□□ 1.04
USH1C-205ENST00000527020 PRAMEF22A3QJZ6 481 aa21.51■■□□□ 1.03
USH1C-205ENST00000527020 CYP2E1P05181 493 aaPredicted RBP21.51■■□□□ 1.03
USH1C-205ENST00000527020 RHPN1Q8TCX5 695 aa21.51■■□□□ 1.03
USH1C-205ENST00000527020 SCN11AQ9UI33 1791 aa21.51■■□□□ 1.03
USH1C-205ENST00000527020 ERBB3P21860 1342 aa21.5■■□□□ 1.03
USH1C-205ENST00000527020 PI4K2BQ8TCG2 481 aa21.5■■□□□ 1.03
USH1C-205ENST00000527020 C19orf44Q9H6X5 657 aa21.5■■□□□ 1.03
USH1C-205ENST00000527020 PALD1Q9ULE6 856 aa21.5■■□□□ 1.03
USH1C-205ENST00000527020 STRCP1A6NGW2 1772 aa21.5■■□□□ 1.03
USH1C-205ENST00000527020 COL18A1P39060 1754 aa21.49■■□□□ 1.03
USH1C-205ENST00000527020 BAG4O95429 457 aaKnown RBP21.49■■□□□ 1.03
USH1C-205ENST00000527020 IL25Q9H293 177 aa21.49■■□□□ 1.03
USH1C-205ENST00000527020 ZGPATQ8N5A5 531 aaKnown RBP21.48■■□□□ 1.03
USH1C-205ENST00000527020 C5P01031 1676 aa21.48■■□□□ 1.03
USH1C-205ENST00000527020 PKP1Q13835 747 aa21.48■■□□□ 1.03
USH1C-205ENST00000527020 KIF1BPQ96EK5 621 aa21.48■■□□□ 1.03
USH1C-205ENST00000527020 ARXQ96QS3 562 aa21.48■■□□□ 1.03
USH1C-205ENST00000527020 MAP3K2Q9Y2U5 619 aa21.48■■□□□ 1.03
USH1C-205ENST00000527020 PTMSP20962 102 aa21.47■■□□□ 1.03
USH1C-205ENST00000527020 ZC3H6P61129 1189 aaKnown RBP21.47■■□□□ 1.03
USH1C-205ENST00000527020 MTX1Q13505 466 aa21.47■■□□□ 1.03
USH1C-205ENST00000527020 SKOR2Q2VWA4 1001 aaPredicted RBP21.47■■□□□ 1.03
USH1C-205ENST00000527020 KSR2Q6VAB6 950 aa21.47■■□□□ 1.03
USH1C-205ENST00000527020 IL17RAQ96F46 866 aa21.47■■□□□ 1.03
USH1C-205ENST00000527020 CWC22Q9HCG8 908 aaKnown RBP21.47■■□□□ 1.03
USH1C-205ENST00000527020 NUCB2P80303 420 aa21.46■■□□□ 1.03
USH1C-205ENST00000527020 ANO2Q9NQ90 1003 aa21.46■■□□□ 1.03
USH1C-205ENST00000527020 ALDH1L1O75891 902 aa21.46■■□□□ 1.03
USH1C-205ENST00000527020 NEK4P51957 841 aa21.46■■□□□ 1.03
USH1C-205ENST00000527020 PANK2Q9BZ23 570 aa21.46■■□□□ 1.03
USH1C-205ENST00000527020 KDM6AO15550 1401 aaPredicted RBP21.45■■□□□ 1.02
USH1C-205ENST00000527020 ANAPC15P60006 121 aa21.44■■□□□ 1.02
USH1C-205ENST00000527020 MAP4K4O95819 1239 aaPredicted RBP21.44■■□□□ 1.02
USH1C-205ENST00000527020 DDX17Q92841 729 aaKnown RBP21.44■■□□□ 1.02
USH1C-205ENST00000527020 ZDHHC9Q9Y397 364 aa21.44■■□□□ 1.02
USH1C-205ENST00000527020 PDIA6Q15084 440 aa21.43■■□□□ 1.02
USH1C-205ENST00000527020 CWF19L2Q2TBE0 894 aaKnown RBP21.43■■□□□ 1.02
USH1C-205ENST00000527020 USP42Q9H9J4 1324 aaKnown RBP21.43■■□□□ 1.02
USH1C-205ENST00000527020 MCCP23508 829 aa21.43■■□□□ 1.02
USH1C-205ENST00000527020 TMX3Q96JJ7 454 aa21.43■■□□□ 1.02
USH1C-205ENST00000527020 HYPKQ9NX55 129 aa21.43■■□□□ 1.02
USH1C-205ENST00000527020 MRE11P49959 708 aa21.42■■□□□ 1.02
USH1C-205ENST00000527020 MEGF6O75095 1541 aa21.42■■□□□ 1.02
USH1C-205ENST00000527020 HSP90AB4PQ58FF6 505 aa21.41■■□□□ 1.02
USH1C-205ENST00000527020 GAS2L3Q86XJ1 694 aa21.41■■□□□ 1.02
USH1C-205ENST00000527020 DDX21Q9NR30 783 aaKnown RBP eCLIP21.41■■□□□ 1.02
USH1C-205ENST00000527020 C9orf78Q9NZ63 289 aaPredicted RBP21.41■■□□□ 1.02
USH1C-205ENST00000527020 ISY1Q9ULR0 285 aaKnown RBP21.41■■□□□ 1.02
USH1C-205ENST00000527020 NPHP3Q7Z494 1330 aa21.41■■□□□ 1.02
USH1C-205ENST00000527020 TMEM94Q12767 1356 aa21.41■■□□□ 1.02
USH1C-205ENST00000527020 ABCC6O95255 1503 aa21.4■■□□□ 1.02
USH1C-205ENST00000527020 GOLGA6L22H0YM25 854 aa21.4■■□□□ 1.02
USH1C-205ENST00000527020 EPB41L2O43491 1005 aaKnown RBP21.4■■□□□ 1.02
USH1C-205ENST00000527020 GRPEL1Q9HAV7 217 aa21.4■■□□□ 1.02
USH1C-205ENST00000527020 SLC39A6Q13433 755 aa21.4■■□□□ 1.02
USH1C-205ENST00000527020 KAZALD1Q96I82 304 aa21.4■■□□□ 1.02
USH1C-205ENST00000527020 UTYO14607 1347 aa21.4■■□□□ 1.02
USH1C-205ENST00000527020 HSPA4P34932 840 aa21.39■■□□□ 1.01
USH1C-205ENST00000527020 MCM2P49736 904 aa21.39■■□□□ 1.01
USH1C-205ENST00000527020 CUL4AQ13619 759 aa21.39■■□□□ 1.01
USH1C-205ENST00000527020 ZNF790Q6PG37 636 aa21.39■■□□□ 1.01
USH1C-205ENST00000527020 LINS1Q8NG48 757 aa21.39■■□□□ 1.01
USH1C-205ENST00000527020 RAPGEF4Q8WZA2 1011 aa21.39■■□□□ 1.01
USH1C-205ENST00000527020 SLC52A2Q9HAB3 445 aa21.39■■□□□ 1.01
USH1C-205ENST00000527020 NLRP2Q9NX02 1062 aa21.39■■□□□ 1.01
USH1C-205ENST00000527020 SGSM2O43147 1006 aa21.38■■□□□ 1.01
USH1C-205ENST00000527020 PHKG2P15735 406 aa21.38■■□□□ 1.01
USH1C-205ENST00000527020 KLHL40Q2TBA0 621 aa21.38■■□□□ 1.01
USH1C-205ENST00000527020 FAM43AQ8N2R8 423 aa21.38■■□□□ 1.01
USH1C-205ENST00000527020 DCCP43146 1447 aa21.38■■□□□ 1.01
USH1C-205ENST00000527020 ATF3P18847 181 aa21.38■■□□□ 1.01
USH1C-205ENST00000527020 MCTP1Q6DN14 999 aa21.38■■□□□ 1.01
USH1C-205ENST00000527020 PA2G4Q9UQ80 394 aaKnown RBP21.38■■□□□ 1.01
USH1C-205ENST00000527020 PKD1L3Q7Z443 1732 aa21.37■■□□□ 1.01
USH1C-205ENST00000527020 TTC41PQ6P2S7 1318 aa21.37■■□□□ 1.01
USH1C-205ENST00000527020 SUCLG2Q96I99 432 aa21.37■■□□□ 1.01
USH1C-205ENST00000527020 LMBRD1Q9NUN5 540 aa21.37■■□□□ 1.01
USH1C-205ENST00000527020 RAD50Q92878 1312 aa21.37■■□□□ 1.01
USH1C-205ENST00000527020 CNTROBQ8N137 903 aa21.37■■□□□ 1.01
USH1C-205ENST00000527020 GRM8O00222 908 aa21.36■■□□□ 1.01
USH1C-205ENST00000527020 AIMP1Q12904 312 aaKnown RBP21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 97.6 ms