RNA–Protein interactions for RNA: ENST00000517578.1

HMGB1P19-201, Transcript of high mobility group box 1 pseudogene 19, humanhuman

BASIC

Gene HMGB1P19, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P19-201ENST00000517578 SHISA8B8ZZ34 492 aa6.35□□□□□ -1.39
HMGB1P19-201ENST00000517578 UBTFP17480 764 aaKnown RBP6.35□□□□□ -1.39
HMGB1P19-201ENST00000517578 MAP2K3P46734 347 aa6.35□□□□□ -1.39
HMGB1P19-201ENST00000517578 VAC14Q08AM6 782 aa6.35□□□□□ -1.39
HMGB1P19-201ENST00000517578 PODNQ7Z5L7 613 aa6.35□□□□□ -1.39
HMGB1P19-201ENST00000517578 NPM2Q86SE8 214 aaKnown RBP6.35□□□□□ -1.39
HMGB1P19-201ENST00000517578 IPO4Q8TEX9 1081 aaKnown RBP6.35□□□□□ -1.39
HMGB1P19-201ENST00000517578 POM121Q96HA1 1249 aa6.35□□□□□ -1.39
HMGB1P19-201ENST00000517578 MAP7D2Q96T17 732 aa6.35□□□□□ -1.39
HMGB1P19-201ENST00000517578 PDCL3Q9H2J4 239 aa6.35□□□□□ -1.39
HMGB1P19-201ENST00000517578 RUBCNLQ9H714 662 aa6.35□□□□□ -1.39
HMGB1P19-201ENST00000517578 PPP4R2Q9NY27 417 aa6.35□□□□□ -1.39
HMGB1P19-201ENST00000517578 COG6Q9Y2V7 657 aa6.35□□□□□ -1.39
HMGB1P19-201ENST00000517578 RAD21O60216 631 aa6.34□□□□□ -1.39
HMGB1P19-201ENST00000517578 CANXP27824 592 aaKnown RBP6.34□□□□□ -1.39
HMGB1P19-201ENST00000517578 SNRPNP63162 240 aaKnown RBP6.34□□□□□ -1.39
HMGB1P19-201ENST00000517578 LBRQ14739 615 aaKnown RBP6.34□□□□□ -1.39
HMGB1P19-201ENST00000517578 GNASQ5JWF2 1037 aa6.34□□□□□ -1.39
HMGB1P19-201ENST00000517578 TMEM214Q6NUQ4 689 aaKnown RBP6.34□□□□□ -1.39
HMGB1P19-201ENST00000517578 KLRG1Q96E93 195 aa6.34□□□□□ -1.39
HMGB1P19-201ENST00000517578 ARID3AQ99856 593 aa6.34□□□□□ -1.39
HMGB1P19-201ENST00000517578 CHIC2Q9UKJ5 165 aa6.34□□□□□ -1.39
HMGB1P19-201ENST00000517578 DOLKQ9UPQ8 538 aa6.34□□□□□ -1.39
HMGB1P19-201ENST00000517578 PROCP04070 461 aa6.33□□□□□ -1.4
HMGB1P19-201ENST00000517578 MSX1P28360 303 aa6.33□□□□□ -1.4
HMGB1P19-201ENST00000517578 TNNT2P45379 298 aaPredicted RBP6.33□□□□□ -1.4
HMGB1P19-201ENST00000517578 EIF4G2P78344 907 aaKnown RBP eCLIP6.33□□□□□ -1.4
HMGB1P19-201ENST00000517578 ESCO1Q5FWF5 840 aa6.33□□□□□ -1.4
HMGB1P19-201ENST00000517578 RHBDD1Q8TEB9 315 aa6.33□□□□□ -1.4
HMGB1P19-201ENST00000517578 SPOCK3Q9BQ16 436 aa6.33□□□□□ -1.4
HMGB1P19-201ENST00000517578 NDFIP2Q9NV92 336 aa6.33□□□□□ -1.4
HMGB1P19-201ENST00000517578 C2CD2LO14523 706 aa6.32□□□□□ -1.4
HMGB1P19-201ENST00000517578 MSTNO14793 375 aa6.32□□□□□ -1.4
HMGB1P19-201ENST00000517578 CDK11BP21127 795 aaKnown RBP6.32□□□□□ -1.4
HMGB1P19-201ENST00000517578 SCNN1DP51172 638 aa6.32□□□□□ -1.4
HMGB1P19-201ENST00000517578 USP4Q13107 963 aa6.32□□□□□ -1.4
HMGB1P19-201ENST00000517578 GALNT6Q8NCL4 622 aa6.32□□□□□ -1.4
HMGB1P19-201ENST00000517578 ATXN7L1Q9ULK2 861 aaPredicted RBP6.32□□□□□ -1.4
HMGB1P19-201ENST00000517578 NAP1L2Q9ULW6 460 aaPredicted RBP6.32□□□□□ -1.4
HMGB1P19-201ENST00000517578 PHF24Q9UPV7 400 aa6.32□□□□□ -1.4
HMGB1P19-201ENST00000517578 CCER2I3L3R5 266 aa6.31□□□□□ -1.4
HMGB1P19-201ENST00000517578 BNIP3LO60238 219 aa6.31□□□□□ -1.4
HMGB1P19-201ENST00000517578 HMGB1P09429 215 aaKnown RBP6.31□□□□□ -1.4
HMGB1P19-201ENST00000517578 CSB-PGBD3P0DP91 1061 aa6.31□□□□□ -1.4
HMGB1P19-201ENST00000517578 HOXB4P17483 251 aaPredicted RBP6.31□□□□□ -1.4
HMGB1P19-201ENST00000517578 PTMSP20962 102 aa6.31□□□□□ -1.4
HMGB1P19-201ENST00000517578 GTF2E1P29083 439 aaPredicted RBP6.31□□□□□ -1.4
HMGB1P19-201ENST00000517578 TLR1Q15399 786 aa6.31□□□□□ -1.4
HMGB1P19-201ENST00000517578 WASHC4Q2M389 1173 aa6.31□□□□□ -1.4
HMGB1P19-201ENST00000517578 SLFNL1Q499Z3 407 aa6.31□□□□□ -1.4
HMGB1P19-201ENST00000517578 OXLD1Q5BKU9 147 aa6.31□□□□□ -1.4
HMGB1P19-201ENST00000517578 MTERF4Q7Z6M4 381 aaKnown RBP6.31□□□□□ -1.4
HMGB1P19-201ENST00000517578 RNF135Q8IUD6 432 aa6.31□□□□□ -1.4
HMGB1P19-201ENST00000517578 WWC1Q8IX03 1113 aa6.31□□□□□ -1.4
HMGB1P19-201ENST00000517578 PGBD3Q8N328 593 aa6.31□□□□□ -1.4
HMGB1P19-201ENST00000517578 CLUAP1Q96AJ1 413 aa6.31□□□□□ -1.4
HMGB1P19-201ENST00000517578 ABHD17AQ96GS6 310 aa6.31□□□□□ -1.4
HMGB1P19-201ENST00000517578 CRISPLD1Q9H336 500 aa6.31□□□□□ -1.4
HMGB1P19-201ENST00000517578 TPM2P07951 284 aa6.3□□□□□ -1.4
HMGB1P19-201ENST00000517578 EFHC2Q5JST6 749 aa6.3□□□□□ -1.4
HMGB1P19-201ENST00000517578 TAF3Q5VWG9 929 aa6.3□□□□□ -1.4
HMGB1P19-201ENST00000517578 EDARADDQ8WWZ3 215 aa6.3□□□□□ -1.4
HMGB1P19-201ENST00000517578 DNAAF2Q9NVR5 837 aaKnown RBP6.3□□□□□ -1.4
HMGB1P19-201ENST00000517578 GDF2Q9UK05 429 aaPredicted RBP6.3□□□□□ -1.4
HMGB1P19-201ENST00000517578 KRBA1A5PL33 1030 aa6.29□□□□□ -1.4
HMGB1P19-201ENST00000517578 ADAM23O75077 832 aa6.29□□□□□ -1.4
HMGB1P19-201ENST00000517578 INHAP05111 366 aa6.29□□□□□ -1.4
HMGB1P19-201ENST00000517578 ATP4AP20648 1035 aa6.29□□□□□ -1.4
HMGB1P19-201ENST00000517578 FGFR3P22607 806 aa6.29□□□□□ -1.4
HMGB1P19-201ENST00000517578 COL8A1P27658 744 aa6.29□□□□□ -1.4
HMGB1P19-201ENST00000517578 PLA2G4AP47712 749 aa6.29□□□□□ -1.4
HMGB1P19-201ENST00000517578 CTBSQ01459 385 aa6.29□□□□□ -1.4
HMGB1P19-201ENST00000517578 SEMA3FQ13275 785 aa6.29□□□□□ -1.4
HMGB1P19-201ENST00000517578 L1TD1Q5T7N2 865 aaKnown RBP6.29□□□□□ -1.4
HMGB1P19-201ENST00000517578 GOLGA6L1Q8N7Z2 621 aa6.29□□□□□ -1.4
HMGB1P19-201ENST00000517578 PNNQ9H307 717 aaKnown RBP6.29□□□□□ -1.4
HMGB1P19-201ENST00000517578 EEA1Q15075 1411 aa6.28□□□□□ -1.4
HMGB1P19-201ENST00000517578 BMP4P12644 408 aa6.28□□□□□ -1.4
HMGB1P19-201ENST00000517578 GDF10P55107 478 aa6.28□□□□□ -1.4
HMGB1P19-201ENST00000517578 SLCO4C1Q6ZQN7 724 aa6.28□□□□□ -1.4
HMGB1P19-201ENST00000517578 TEX2Q8IWB9 1127 aa6.28□□□□□ -1.4
HMGB1P19-201ENST00000517578 FTSJ3Q8IY81 847 aaKnown RBP6.28□□□□□ -1.4
HMGB1P19-201ENST00000517578 ZNF295-AS1Q8N0V1 137 aa6.28□□□□□ -1.4
HMGB1P19-201ENST00000517578 TRIM44Q96DX7 344 aaPredicted RBP6.28□□□□□ -1.4
HMGB1P19-201ENST00000517578 HCN2Q9UL51 889 aa6.28□□□□□ -1.4
HMGB1P19-201ENST00000517578 MKL2Q9ULH7 1088 aa6.28□□□□□ -1.4
HMGB1P19-201ENST00000517578 LINC00114Q6XXX2 140 aa6.27□□□□□ -1.41
HMGB1P19-201ENST00000517578 TBC1D9Q6ZT07 1266 aa6.27□□□□□ -1.41
HMGB1P19-201ENST00000517578 PLPP7Q8NBV4 271 aa6.27□□□□□ -1.41
HMGB1P19-201ENST00000517578 SIRT1Q96EB6 747 aa6.27□□□□□ -1.41
HMGB1P19-201ENST00000517578 CHMP4AQ9BY43 222 aa6.27□□□□□ -1.41
HMGB1P19-201ENST00000517578 GGA1Q9UJY5 639 aa6.27□□□□□ -1.41
HMGB1P19-201ENST00000517578 POM121CA8CG34 1229 aa6.26□□□□□ -1.41
HMGB1P19-201ENST00000517578 TMEM229AB2RXF0 380 aa6.26□□□□□ -1.41
HMGB1P19-201ENST00000517578 ITGAEP38570 1179 aa6.26□□□□□ -1.41
HMGB1P19-201ENST00000517578 SMTNP53814 917 aa6.26□□□□□ -1.41
HMGB1P19-201ENST00000517578 C14orf37Q86TY3 774 aa6.26□□□□□ -1.41
HMGB1P19-201ENST00000517578 SMAP1Q8IYB5 467 aaPredicted RBP6.26□□□□□ -1.41
HMGB1P19-201ENST00000517578 ZCCHC2Q9C0B9 1178 aaKnown RBP6.26□□□□□ -1.41
HMGB1P19-201ENST00000517578 SUV39H2Q9H5I1 410 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms