RNA–Protein interactions for RNA: ENST00000517525.1

PVT1-204, Transcript of Pvt1 oncogene, human

TSL 3

Gene PVT1, Length 392 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-204	ENST00000517525	EIF5	P55010	431 aa	Known RBP	32.55	■■■□□ 2.8
PVT1-204	ENST00000517525	PNISR	Q8TF01	805 aa	Known RBP	32.55	■■■□□ 2.8
PVT1-204	ENST00000517525	SRP68	Q9UHB9	627 aa	Known RBP	32.54	■■■□□ 2.8
PVT1-204	ENST00000517525	NARF	Q9UHQ1	456 aa		32.54	■■■□□ 2.8
PVT1-204	ENST00000517525	COL15A1	P39059	1388 aa		32.54	■■■□□ 2.8
PVT1-204	ENST00000517525	ZPR1	O75312	459 aa		32.52	■■■□□ 2.8
PVT1-204	ENST00000517525	SNRPA1	P09661	255 aa	Known RBP	32.52	■■■□□ 2.8
PVT1-204	ENST00000517525		A0A087WZG4	1122 aa		32.51	■■■□□ 2.79
PVT1-204	ENST00000517525	FKBP8	Q14318	412 aa		32.51	■■■□□ 2.79
PVT1-204	ENST00000517525	DLG5	Q8TDM6	1919 aa		32.5	■■■□□ 2.79
PVT1-204	ENST00000517525	IL6ST	P40189	918 aa	Predicted RBP	32.5	■■■□□ 2.79
PVT1-204	ENST00000517525	TMPO	P42166	694 aa	Known RBP	32.5	■■■□□ 2.79
PVT1-204	ENST00000517525	WDR43	Q15061	677 aa	Known RBP eCLIP	32.5	■■■□□ 2.79
PVT1-204	ENST00000517525	CANX	P27824	592 aa	Known RBP	32.49	■■■□□ 2.79
PVT1-204	ENST00000517525	TM4SF1	P30408	202 aa		32.49	■■■□□ 2.79
PVT1-204	ENST00000517525	GPR162	Q16538	588 aa		32.49	■■■□□ 2.79
PVT1-204	ENST00000517525	PARP3	Q9Y6F1	533 aa		32.49	■■■□□ 2.79
PVT1-204	ENST00000517525	RIPK4	P57078	832 aa		32.48	■■■□□ 2.79
PVT1-204	ENST00000517525	USPL1	Q5W0Q7	1092 aa		32.48	■■■□□ 2.79
PVT1-204	ENST00000517525	RUNDC1	Q96C34	613 aa		32.48	■■■□□ 2.79
PVT1-204	ENST00000517525	ADAMTS8	Q9UP79	889 aa		32.48	■■■□□ 2.79
PVT1-204	ENST00000517525	LMOD3	Q0VAK6	560 aa		32.47	■■■□□ 2.79
PVT1-204	ENST00000517525	USP16	Q9Y5T5	823 aa		32.47	■■■□□ 2.79
PVT1-204	ENST00000517525	C10orf71	Q711Q0	1435 aa		32.46	■■■□□ 2.79
PVT1-204	ENST00000517525	BABAM1	Q9NWV8	329 aa		32.46	■■■□□ 2.79
PVT1-204	ENST00000517525	TGFB2	P61812	414 aa		32.45	■■■□□ 2.79
PVT1-204	ENST00000517525	BCL2L12	Q9HB09	334 aa		32.45	■■■□□ 2.79
PVT1-204	ENST00000517525	GRIN3B	O60391	1043 aa		32.44	■■■□□ 2.78
PVT1-204	ENST00000517525	A1BG	P04217	495 aa		32.44	■■■□□ 2.78
PVT1-204	ENST00000517525	DDR1	Q08345	913 aa		32.44	■■■□□ 2.78
PVT1-204	ENST00000517525	THUMPD2	Q9BTF0	503 aa	Known RBP	32.44	■■■□□ 2.78
PVT1-204	ENST00000517525	KIF13B	Q9NQT8	1826 aa		32.43	■■■□□ 2.78
PVT1-204	ENST00000517525	YY1	P25490	414 aa		32.43	■■■□□ 2.78
PVT1-204	ENST00000517525	MIS18A	Q9NYP9	233 aa		32.43	■■■□□ 2.78
PVT1-204	ENST00000517525	PRAMEF22	A3QJZ6	481 aa		32.41	■■■□□ 2.78
PVT1-204	ENST00000517525	POLRMT	O00411	1230 aa	Known RBP	32.41	■■■□□ 2.78
PVT1-204	ENST00000517525	YBX3	P16989	372 aa	Known RBP eCLIP	32.41	■■■□□ 2.78
PVT1-204	ENST00000517525	EIF4A1	P60842	406 aa	Known RBP	32.41	■■■□□ 2.78
PVT1-204	ENST00000517525	KDM3B	Q7LBC6	1761 aa		32.4	■■■□□ 2.78
PVT1-204	ENST00000517525	NFIX	Q14938	502 aa		32.39	■■■□□ 2.78
PVT1-204	ENST00000517525	CCDC146	Q8IYE0	955 aa		32.39	■■■□□ 2.78
PVT1-204	ENST00000517525	GIGYF1	O75420	1035 aa	Predicted RBP	32.38	■■■□□ 2.77
PVT1-204	ENST00000517525	PXDNL	A1KZ92	1463 aa		32.37	■■■□□ 2.77
PVT1-204	ENST00000517525	RGL2	O15211	777 aa		32.36	■■■□□ 2.77
PVT1-204	ENST00000517525	PELP1	Q8IZL8	1130 aa	Known RBP	32.36	■■■□□ 2.77
PVT1-204	ENST00000517525	NPM2	Q86SE8	214 aa	Known RBP	32.35	■■■□□ 2.77
PVT1-204	ENST00000517525	TRIM35	Q9UPQ4	493 aa		32.35	■■■□□ 2.77
PVT1-204	ENST00000517525	NBPF26	B4DH59	902 aa		32.34	■■■□□ 2.77
PVT1-204	ENST00000517525	CAMTA2	O94983	1202 aa		32.34	■■■□□ 2.77
PVT1-204	ENST00000517525	NBPF10	Q6P3W6	841 aa	Known RBP	32.34	■■■□□ 2.77
PVT1-204	ENST00000517525	NBPF15	Q8N660	670 aa		32.34	■■■□□ 2.77
PVT1-204	ENST00000517525	TBC1D2B	Q9UPU7	963 aa		32.33	■■■□□ 2.77
PVT1-204	ENST00000517525	RRP7A	Q9Y3A4	280 aa	Known RBP	32.33	■■■□□ 2.77
PVT1-204	ENST00000517525	TSPYL4	Q9UJ04	414 aa		32.32	■■■□□ 2.76
PVT1-204	ENST00000517525	KIAA1551	Q9HCM1	1747 aa		32.31	■■■□□ 2.76
PVT1-204	ENST00000517525	UTRN	P46939	3433 aa		32.31	■■■□□ 2.76
PVT1-204	ENST00000517525	CHD4	Q14839	1912 aa		32.3	■■■□□ 2.76
PVT1-204	ENST00000517525	SERPINB2	P05120	415 aa		32.3	■■■□□ 2.76
PVT1-204	ENST00000517525	CLEC4G	Q6UXB4	293 aa		32.3	■■■□□ 2.76
PVT1-204	ENST00000517525	DZIP3	Q86Y13	1208 aa	Known RBP	32.3	■■■□□ 2.76
PVT1-204	ENST00000517525	ZNF330	Q9Y3S2	320 aa	Predicted RBP	32.3	■■■□□ 2.76
PVT1-204	ENST00000517525	NRXN2	Q9P2S2	1712 aa		32.29	■■■□□ 2.76
PVT1-204	ENST00000517525		A0A0G2JLW4	131 aa		32.29	■■■□□ 2.76
PVT1-204	ENST00000517525	CHL1	O00533	1208 aa		32.29	■■■□□ 2.76
PVT1-204	ENST00000517525	DPEP1	P16444	411 aa		32.29	■■■□□ 2.76
PVT1-204	ENST00000517525	NEUROD2	Q15784	382 aa		32.29	■■■□□ 2.76
PVT1-204	ENST00000517525	SCN7A	Q01118	1682 aa		32.29	■■■□□ 2.76
PVT1-204	ENST00000517525	ANP32C	O43423	234 aa		32.28	■■■□□ 2.76
PVT1-204	ENST00000517525	KCNA3	P22001	575 aa		32.28	■■■□□ 2.76
PVT1-204	ENST00000517525	ERBB4	Q15303	1308 aa		32.27	■■■□□ 2.76
PVT1-204	ENST00000517525	TBC1D9B	Q66K14	1250 aa		32.27	■■■□□ 2.76
PVT1-204	ENST00000517525	LAMB4	A4D0S4	1761 aa		32.27	■■■□□ 2.76
PVT1-204	ENST00000517525	PIP4K2A	P48426	406 aa	Predicted RBP	32.26	■■■□□ 2.75
PVT1-204	ENST00000517525	CCDC184	Q52MB2	194 aa		32.26	■■■□□ 2.75
PVT1-204	ENST00000517525	CARMIL3	Q8ND23	1372 aa		32.23	■■■□□ 2.75
PVT1-204	ENST00000517525	APAF1	O14727	1248 aa		32.23	■■■□□ 2.75
PVT1-204	ENST00000517525	PIM2	Q9P1W9	311 aa		32.22	■■■□□ 2.75
PVT1-204	ENST00000517525	ZNF652	Q9Y2D9	606 aa		32.22	■■■□□ 2.75
PVT1-204	ENST00000517525	BICDL1	Q6ZP65	573 aa		32.21	■■■□□ 2.75
PVT1-204	ENST00000517525	SETDB2	Q96T68	719 aa		32.21	■■■□□ 2.75
PVT1-204	ENST00000517525	BCOR	Q6W2J9	1755 aa		32.2	■■■□□ 2.75
PVT1-204	ENST00000517525	GOLGB1	Q14789	3259 aa	Known RBP	32.2	■■■□□ 2.75
PVT1-204	ENST00000517525	CFAP44	Q96MT7	982 aa		32.2	■■■□□ 2.75
PVT1-204	ENST00000517525	AFDN	P55196	1824 aa	Known RBP	32.2	■■■□□ 2.75
PVT1-204	ENST00000517525	N4BP2	Q86UW6	1770 aa	Predicted RBP	32.19	■■■□□ 2.74
PVT1-204	ENST00000517525	ERVV-1	B6SEH8	477 aa		32.19	■■■□□ 2.74
PVT1-204	ENST00000517525	PDZRN3	Q9UPQ7	1066 aa		32.19	■■■□□ 2.74
PVT1-204	ENST00000517525	ZNF853	P0CG23	659 aa		32.17	■■■□□ 2.74
PVT1-204	ENST00000517525	CALD1	Q05682	793 aa	Known RBP	32.17	■■■□□ 2.74
PVT1-204	ENST00000517525	NCBP3	Q53F19	620 aa	Known RBP	32.17	■■■□□ 2.74
PVT1-204	ENST00000517525	ZNF784	Q8NCA9	323 aa	Predicted RBP	32.17	■■■□□ 2.74
PVT1-204	ENST00000517525	BCS1L	Q9Y276	419 aa		32.17	■■■□□ 2.74
PVT1-204	ENST00000517525	BRCA1	P38398	1863 aa	Known RBP	32.16	■■■□□ 2.74
PVT1-204	ENST00000517525	PRR5L	Q6MZQ0	368 aa		32.16	■■■□□ 2.74
PVT1-204	ENST00000517525	BRIP1	Q9BX63	1249 aa		32.16	■■■□□ 2.74
PVT1-204	ENST00000517525	HOXB7	P09629	217 aa		32.15	■■■□□ 2.74
PVT1-204	ENST00000517525	CHRNA5	P30532	468 aa		32.15	■■■□□ 2.74
PVT1-204	ENST00000517525	PDIA6	Q15084	440 aa		32.15	■■■□□ 2.74
PVT1-204	ENST00000517525	DALRD3	Q5D0E6	543 aa	Known RBP	32.15	■■■□□ 2.74
PVT1-204	ENST00000517525	LRP10	Q7Z4F1	713 aa		32.15	■■■□□ 2.74

Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms