RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 ARL4DP49703 201 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 VEGFBP49765 207 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 ERVK-9P63128 1117 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 CTDSPL2Q05D32 466 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 POU4F2Q12837 409 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 FLIIQ13045 1269 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 TLR1Q15399 786 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 NR6A1Q15406 480 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 NEUROD2Q15784 382 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 PKN1Q16512 942 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 ELOA3BQ3SY89 546 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 ZMYM1Q5SVZ6 1142 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 TRAPPC3LQ5T215 181 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 ERICH6BQ5W0A0 696 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 INTS5Q6P9B9 1019 aaKnown RBP0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 DTWD1Q8N5C7 304 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 ZNF784Q8NCA9 323 aaPredicted RBP0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 ELOA3Q8NG57 546 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 CABLES1Q8TDN4 633 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 GTPBP3Q969Y2 492 aaKnown RBP0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 EMID1Q96A84 441 aaPredicted RBP0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 DCAF5Q96JK2 942 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 SPOCK3Q9BQ16 436 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 YIPF2Q9BWQ6 316 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 KLF16Q9BXK1 252 aaPredicted RBP0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 CEP41Q9BYV8 373 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 BCL11AQ9H165 835 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 ZFP64Q9NPA5 681 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 CYLDQ9NQC7 956 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 CABP1Q9NZU7 370 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 USP21Q9UK80 565 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 ZNF232Q9UNY5 417 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 MTMR7Q9Y216 660 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 FNDC3AQ9Y2H6 1198 aaKnown RBP0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 PCDHB15Q9Y5E8 787 aa0.98□□□□□ -2.25
RNU4-54P-201ENST00000516428 ERBB4Q15303 1308 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 TTBK1Q5TCY1 1321 aaPredicted RBP0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 SERTM1A2A2V5 107 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 ESPNB1AK53 854 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 BIN1O00499 593 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 CDK2AP1O14519 115 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 KHNYNO15037 678 aaKnown RBP0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 SART1O43290 800 aaKnown RBP0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 SIN3BO75182 1162 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 RGS9O75916 674 aaPredicted RBP0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 GHRHP01286 108 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 NEFLP07196 543 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 NR3C2P08235 984 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 H2AFB1P0C5Y9 115 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 H2AFB2P0C5Z0 115 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 FAM157BP0CG42 384 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 ELNP15502 786 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 ITGAEP38570 1179 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 CTSOP43234 321 aaPredicted RBP0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 BAG6P46379 1132 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 IRAK1P51617 712 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 SMTNP53814 917 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 CABP4P57796 275 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 RBM10P98175 930 aaKnown RBP0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 CENPCQ03188 943 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 PDE4CQ08493 712 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 TRIM26Q12899 539 aaPredicted RBP0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 CBLBQ13191 982 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 CPSF6Q16630 551 aaKnown RBP eCLIP0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 QPCTQ16769 361 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 PLA2G4EQ3MJ16 856 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 OXLD1Q5BKU9 147 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 SAMD5Q5TGI4 173 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 ZNF468Q5VIY5 522 aaPredicted RBP0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 C1orf53Q5VUE5 145 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 ZNF385CQ66K41 422 aaPredicted RBP0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 LARP1Q6PKG0 1096 aaKnown RBP0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 CHSY3Q70JA7 882 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 PPARGC1BQ86YN6 1023 aaKnown RBP0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 NFATC2IPQ8NCF5 419 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 RHPN1Q8TCX5 695 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 HLA-CQ95604 372 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 PMEPA1Q969W9 287 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 KLRG1Q96E93 195 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 ZNF837Q96EG3 531 aaPredicted RBP0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 AGBL1Q96MI9 1066 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 GRIP2Q9C0E4 1043 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 ZMYND15Q9H091 742 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 CRISPLD1Q9H336 500 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 KDM4CQ9H3R0 1056 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 SEMA6BQ9H3T3 888 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 ARHGEF10LQ9HCE6 1279 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 GPAMQ9HCL2 828 aa0.97□□□□□ -2.25
RNU4-54P-201ENST00000516428 A0A1W2PNR3 127 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 ZBTB7CA1YPR0 619 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 PALM3A6NDB9 673 aaPredicted RBP0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 A6NJY4 79 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 SOBPA7XYQ1 873 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 NEURL1BA8MQ27 555 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 ADARB2-AS1A8MUL3 147 aa0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 PER1O15534 1290 aaPredicted RBP0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 DHX15O43143 795 aaKnown RBP0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 GIGYF1O75420 1035 aaPredicted RBP0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 SMNDC1O75940 238 aaKnown RBP eCLIP0.96□□□□□ -2.26
RNU4-54P-201ENST00000516428 ARHGEF15O94989 841 aa0.96□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms