RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 GIGYF1O75420 1035 aaPredicted RBP18.18■□□□□ 0.5
NUP54-217ENST00000514987 CLEC17AQ6ZS10 378 aa18.18■□□□□ 0.5
NUP54-217ENST00000514987 PPP1R42Q7Z4L9 355 aa18.18■□□□□ 0.5
NUP54-217ENST00000514987 PI4KAP1Q8N8J0 262 aa18.18■□□□□ 0.5
NUP54-217ENST00000514987 KIF1BPQ96EK5 621 aa18.18■□□□□ 0.5
NUP54-217ENST00000514987 ESYT1Q9BSJ8 1104 aa18.18■□□□□ 0.5
NUP54-217ENST00000514987 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.18■□□□□ 0.56e-8■■■□□ 16.7
NUP54-217ENST00000514987 ERBB3P21860 1342 aa18.18■□□□□ 0.5
NUP54-217ENST00000514987 MCM2P49736 904 aa18.17■□□□□ 0.5
NUP54-217ENST00000514987 ANAPC15P60006 121 aa18.17■□□□□ 0.5
NUP54-217ENST00000514987 NUCB2P80303 420 aa18.17■□□□□ 0.5
NUP54-217ENST00000514987 RAPGEF4Q8WZA2 1011 aa18.17■□□□□ 0.5
NUP54-217ENST00000514987 ISY1Q9ULR0 285 aaKnown RBP18.17■□□□□ 0.5
NUP54-217ENST00000514987 KCNQ3O43525 872 aa18.17■□□□□ 0.5
NUP54-217ENST00000514987 ADCY9O60503 1353 aa18.17■□□□□ 0.5
NUP54-217ENST00000514987 SURF6O75683 361 aaKnown RBP18.17■□□□□ 0.5
NUP54-217ENST00000514987 DDX58O95786 925 aaKnown RBP18.17■□□□□ 0.5
NUP54-217ENST00000514987 MTX1Q13505 466 aa18.17■□□□□ 0.5
NUP54-217ENST00000514987 KSR2Q6VAB6 950 aa18.17■□□□□ 0.5
NUP54-217ENST00000514987 GOLGA6L22H0YM25 854 aa18.16■□□□□ 0.5
NUP54-217ENST00000514987 SRGAP3O43295 1099 aa18.16■□□□□ 0.5
NUP54-217ENST00000514987 SPG7Q9UQ90 795 aa18.16■□□□□ 0.5
NUP54-217ENST00000514987 AXIN2Q9Y2T1 843 aa18.16■□□□□ 0.5
NUP54-217ENST00000514987 RGPD5Q99666 1765 aa18.15■□□□□ 0.5
NUP54-217ENST00000514987 TRIM6-TRIM34B2RNG4 842 aa18.15■□□□□ 0.5
NUP54-217ENST00000514987 CHMLP26374 656 aa18.15■□□□□ 0.5
NUP54-217ENST00000514987 RHPN1Q8TCX5 695 aa18.15■□□□□ 0.5
NUP54-217ENST00000514987 IL17RAQ96F46 866 aa18.15■□□□□ 0.5
NUP54-217ENST00000514987 TATP17735 454 aaPredicted RBP18.14■□□□□ 0.49
NUP54-217ENST00000514987 NPHP3Q7Z494 1330 aa18.13■□□□□ 0.49
NUP54-217ENST00000514987 CADPS2Q86UW7 1296 aa18.13■□□□□ 0.49
NUP54-217ENST00000514987 ERC1Q8IUD2 1116 aa18.13■□□□□ 0.49
NUP54-217ENST00000514987 RILPL2Q969X0 211 aa18.13■□□□□ 0.49
NUP54-217ENST00000514987 DDX21Q9NR30 783 aaKnown RBP eCLIP18.13■□□□□ 0.49
NUP54-217ENST00000514987 SCN11AQ9UI33 1791 aa18.13■□□□□ 0.49
NUP54-217ENST00000514987 TMEM94Q12767 1356 aa18.13■□□□□ 0.49
NUP54-217ENST00000514987 USP42Q9H9J4 1324 aaKnown RBP18.13■□□□□ 0.49
NUP54-217ENST00000514987 GOLGA6L3A6NEY3 463 aa18.13■□□□□ 0.49
NUP54-217ENST00000514987 NBPF7P0C2Y1 421 aaPredicted RBP18.13■□□□□ 0.49
NUP54-217ENST00000514987 C9orf78Q9NZ63 289 aaPredicted RBP18.13■□□□□ 0.49
NUP54-217ENST00000514987 MAP3K2Q9Y2U5 619 aa18.13■□□□□ 0.49
NUP54-217ENST00000514987 LINS1Q8NG48 757 aa18.12■□□□□ 0.49
NUP54-217ENST00000514987 COL18A1P39060 1754 aa18.11■□□□□ 0.49
NUP54-217ENST00000514987 TTC41PQ6P2S7 1318 aa18.11■□□□□ 0.49
NUP54-217ENST00000514987 FSD2A1L4K1 749 aa18.11■□□□□ 0.49
NUP54-217ENST00000514987 ZC3H6P61129 1189 aaKnown RBP18.11■□□□□ 0.49
NUP54-217ENST00000514987 SLC52A2Q9HAB3 445 aa18.11■□□□□ 0.49
NUP54-217ENST00000514987 UTYO14607 1347 aa18.1■□□□□ 0.49
NUP54-217ENST00000514987 AK9Q5TCS8 1911 aa18.1■□□□□ 0.49
NUP54-217ENST00000514987 IL1RAPL2Q9NP60 686 aa18.1■□□□□ 0.49
NUP54-217ENST00000514987 NLRP2Q9NX02 1062 aa18.1■□□□□ 0.49
NUP54-217ENST00000514987 TNS3Q68CZ2 1445 aa18.1■□□□□ 0.49
NUP54-217ENST00000514987 CRYBG1Q9Y4K1 1723 aa18.1■□□□□ 0.49
NUP54-217ENST00000514987 IFNL2Q8IZJ0 200 aa18.09■□□□□ 0.49
NUP54-217ENST00000514987 CNTROBQ8N137 903 aa18.09■□□□□ 0.49
NUP54-217ENST00000514987 FOXD4L1Q9NU39 408 aa18.09■□□□□ 0.49
NUP54-217ENST00000514987 PHKG2P15735 406 aa18.08■□□□□ 0.49
NUP54-217ENST00000514987 OS9Q13438 667 aaPredicted RBP18.08■□□□□ 0.49
NUP54-217ENST00000514987 TSHZ3Q63HK5 1081 aa18.08■□□□□ 0.49
NUP54-217ENST00000514987 ZNF790Q6PG37 636 aa18.08■□□□□ 0.49
NUP54-217ENST00000514987 PI4K2BQ8TCG2 481 aa18.08■□□□□ 0.49
NUP54-217ENST00000514987 GPATCH3Q96I76 525 aa18.08■□□□□ 0.49
NUP54-217ENST00000514987 ANO2Q9NQ90 1003 aa18.08■□□□□ 0.49
NUP54-217ENST00000514987 BRPF3Q9ULD4 1205 aa18.08■□□□□ 0.49
NUP54-217ENST00000514987 GLRX3O76003 335 aaKnown RBP18.08■□□□□ 0.48
NUP54-217ENST00000514987 PLEKHG5O94827 1062 aa18.08■□□□□ 0.48
NUP54-217ENST00000514987 ANXA1P04083 346 aa18.08■□□□□ 0.48
NUP54-217ENST00000514987 LARP1Q6PKG0 1096 aaKnown RBP18.08■□□□□ 0.48
NUP54-217ENST00000514987 NUTM1Q86Y26 1132 aa18.08■□□□□ 0.48
NUP54-217ENST00000514987 CLASRPQ8N2M8 674 aaKnown RBP18.08■□□□□ 0.48
NUP54-217ENST00000514987 CPDO75976 1380 aa18.08■□□□□ 0.48
NUP54-217ENST00000514987 MRC1P22897 1456 aa18.07■□□□□ 0.48
NUP54-217ENST00000514987 GRM8O00222 908 aa18.07■□□□□ 0.48
NUP54-217ENST00000514987 CYP2E1P05181 493 aaPredicted RBP18.07■□□□□ 0.48
NUP54-217ENST00000514987 SSFA2P28290 1259 aa18.07■□□□□ 0.48
NUP54-217ENST00000514987 NEK4P51957 841 aa18.07■□□□□ 0.48
NUP54-217ENST00000514987 DCAF5Q96JK2 942 aa18.07■□□□□ 0.48
NUP54-217ENST00000514987 STRCP1A6NGW2 1772 aa18.06■□□□□ 0.48
NUP54-217ENST00000514987 MRE11P49959 708 aa18.06■□□□□ 0.48
NUP54-217ENST00000514987 NEXNQ0ZGT2 675 aa18.06■□□□□ 0.48
NUP54-217ENST00000514987 PKD1L3Q7Z443 1732 aa18.06■□□□□ 0.48
NUP54-217ENST00000514987 KDM6AO15550 1401 aaPredicted RBP18.06■□□□□ 0.48
NUP54-217ENST00000514987 BAG4O95429 457 aaKnown RBP18.05■□□□□ 0.48
NUP54-217ENST00000514987 CSB-PGBD3P0DP91 1061 aa18.05■□□□□ 0.48
NUP54-217ENST00000514987 PROSER3Q2NL68 480 aa18.05■□□□□ 0.48
NUP54-217ENST00000514987 SPATA31A3Q5VYP0 1347 aa18.05■□□□□ 0.48
NUP54-217ENST00000514987 PDIA6Q15084 440 aa18.04■□□□□ 0.48
NUP54-217ENST00000514987 UNC5CLQ8IV45 518 aa18.04■□□□□ 0.48
NUP54-217ENST00000514987 RUFY2Q8WXA3 655 aa18.04■□□□□ 0.48
NUP54-217ENST00000514987 INTS4Q96HW7 963 aaKnown RBP18.04■□□□□ 0.48
NUP54-217ENST00000514987 GZF1Q9H116 711 aaPredicted RBP18.04■□□□□ 0.48
NUP54-217ENST00000514987 MEGF6O75095 1541 aa18.04■□□□□ 0.48
NUP54-217ENST00000514987 ECHDC1Q9NTX5 307 aa18.04■□□□□ 0.48
NUP54-217ENST00000514987 SGSM2O43147 1006 aa18.03■□□□□ 0.48
NUP54-217ENST00000514987 SNRPA1P09661 255 aaKnown RBP18.03■□□□□ 0.48
NUP54-217ENST00000514987 HSPA4P34932 840 aa18.03■□□□□ 0.48
NUP54-217ENST00000514987 CUL4AQ13619 759 aa18.03■□□□□ 0.48
NUP54-217ENST00000514987 KIAA1211Q6ZU35 1233 aa18.03■□□□□ 0.48
NUP54-217ENST00000514987 RIC3Q7Z5B4 369 aa18.03■□□□□ 0.48
NUP54-217ENST00000514987 TTC5Q8N0Z6 440 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms