RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 MSH5O43196 834 aa18.58■□□□□ 0.56
NUP54-216ENST00000514901 GIGYF1O75420 1035 aaPredicted RBP18.58■□□□□ 0.56
NUP54-216ENST00000514901 WDR63Q8IWG1 891 aa18.58■□□□□ 0.56
NUP54-216ENST00000514901 PDGFDQ9GZP0 370 aaPredicted RBP18.58■□□□□ 0.56
NUP54-216ENST00000514901 MTFR1LQ9H019 292 aa18.58■□□□□ 0.56
NUP54-216ENST00000514901 SPON1Q9HCB6 807 aa18.58■□□□□ 0.56
NUP54-216ENST00000514901 TJP1Q07157 1748 aa18.57■□□□□ 0.56
NUP54-216ENST00000514901 MYH14Q7Z406 1995 aaKnown RBP18.57■□□□□ 0.56
NUP54-216ENST00000514901 USP16Q9Y5T5 823 aa18.57■□□□□ 0.56
NUP54-216ENST00000514901 KDM3BQ7LBC6 1761 aa18.57■□□□□ 0.56
NUP54-216ENST00000514901 PHF14O94880 888 aa18.56■□□□□ 0.56
NUP54-216ENST00000514901 SALL2Q9Y467 1007 aaPredicted RBP18.56■□□□□ 0.56
NUP54-216ENST00000514901 UBR3Q6ZT12 1888 aa18.56■□□□□ 0.56
NUP54-216ENST00000514901 ZBTB7AO95365 584 aa18.55■□□□□ 0.56
NUP54-216ENST00000514901 RFC4P35249 363 aa18.55■□□□□ 0.56
NUP54-216ENST00000514901 AMIGO3Q86WK7 504 aa18.55■□□□□ 0.56
NUP54-216ENST00000514901 MBIPQ9NS73 344 aa18.55■□□□□ 0.56
NUP54-216ENST00000514901 CASZ1Q86V15 1759 aa18.55■□□□□ 0.56
NUP54-216ENST00000514901 SOS1Q07889 1333 aaPredicted RBP18.54■□□□□ 0.56
NUP54-216ENST00000514901 A0A087WZG4 1122 aa18.54■□□□□ 0.56
NUP54-216ENST00000514901 SENP3-EIF4A1A0A087X0R7 540 aa18.54■□□□□ 0.56
NUP54-216ENST00000514901 NPM2Q86SE8 214 aaKnown RBP18.54■□□□□ 0.56
NUP54-216ENST00000514901 ARHGEF1Q92888 912 aaKnown RBP18.54■□□□□ 0.56
NUP54-216ENST00000514901 ZBTB1Q9Y2K1 713 aa18.54■□□□□ 0.56
NUP54-216ENST00000514901 TUBGCP6Q96RT7 1819 aa18.53■□□□□ 0.56
NUP54-216ENST00000514901 PRAMEF22A3QJZ6 481 aa18.53■□□□□ 0.56
NUP54-216ENST00000514901 A1BGP04217 495 aa18.53■□□□□ 0.56
NUP54-216ENST00000514901 HOXB7P09629 217 aa18.53■□□□□ 0.56
NUP54-216ENST00000514901 CANXP27824 592 aaKnown RBP18.53■□□□□ 0.56
NUP54-216ENST00000514901 IL6STP40189 918 aaPredicted RBP18.53■□□□□ 0.56
NUP54-216ENST00000514901 EIF5P55010 431 aaKnown RBP18.53■□□□□ 0.56
NUP54-216ENST00000514901 SRCAPQ6ZRS2 3230 aa18.52■□□□□ 0.56
NUP54-216ENST00000514901 CHMP4AQ9BY43 222 aa18.52■□□□□ 0.56
NUP54-216ENST00000514901 ATF5Q9Y2D1 282 aaPredicted RBP18.52■□□□□ 0.56
NUP54-216ENST00000514901 POLD1P28340 1107 aa18.51■□□□□ 0.55
NUP54-216ENST00000514901 SMIM5Q71RC9 77 aa18.51■□□□□ 0.55
NUP54-216ENST00000514901 ERBB4Q15303 1308 aa18.5■□□□□ 0.55
NUP54-216ENST00000514901 ZPR1O75312 459 aa18.5■□□□□ 0.55
NUP54-216ENST00000514901 NLGN1Q8N2Q7 840 aa18.5■□□□□ 0.55
NUP54-216ENST00000514901 NARFQ9UHQ1 456 aa18.49■□□□□ 0.55
NUP54-216ENST00000514901 COL15A1P39059 1388 aa18.49■□□□□ 0.55
NUP54-216ENST00000514901 EIF2S2P20042 333 aaKnown RBP18.48■□□□□ 0.55
NUP54-216ENST00000514901 PTGER2P43116 358 aa18.48■□□□□ 0.55
NUP54-216ENST00000514901 DUSP27Q5VZP5 1158 aa18.48■□□□□ 0.55
NUP54-216ENST00000514901 MYH16Q9H6N6 1097 aa18.48■□□□□ 0.55
NUP54-216ENST00000514901 ZNF521Q96K83 1311 aa18.48■□□□□ 0.55
NUP54-216ENST00000514901 USP42Q9H9J4 1324 aaKnown RBP18.48■□□□□ 0.55
NUP54-216ENST00000514901 NBPF26B4DH59 902 aa18.47■□□□□ 0.55
NUP54-216ENST00000514901 GOLGA2Q08379 1002 aa18.47■□□□□ 0.55
NUP54-216ENST00000514901 NBPF10Q6P3W6 841 aaKnown RBP18.47■□□□□ 0.55
NUP54-216ENST00000514901 NBPF15Q8N660 670 aa18.47■□□□□ 0.55
NUP54-216ENST00000514901 SGIP1Q9BQI5 828 aa18.47■□□□□ 0.55
NUP54-216ENST00000514901 ZNF330Q9Y3S2 320 aaPredicted RBP18.47■□□□□ 0.55
NUP54-216ENST00000514901 LRP5O75197 1615 aa18.46■□□□□ 0.55
NUP54-216ENST00000514901 GYS1P13807 737 aa18.46■□□□□ 0.55
NUP54-216ENST00000514901 KRT24Q2M2I5 525 aa18.46■□□□□ 0.55
NUP54-216ENST00000514901 PPP1R1BQ9UD71 204 aaPredicted RBP18.46■□□□□ 0.55
NUP54-216ENST00000514901 HDGFL1Q5TGJ6 251 aa18.45■□□□□ 0.54
NUP54-216ENST00000514901 MSL1Q68DK7 614 aa18.45■□□□□ 0.54
NUP54-216ENST00000514901 TSR2Q969E8 191 aaKnown RBP18.45■□□□□ 0.54
NUP54-216ENST00000514901 LAMB4A4D0S4 1761 aa18.45■□□□□ 0.54
NUP54-216ENST00000514901 RGL2O15211 777 aa18.44■□□□□ 0.54
NUP54-216ENST00000514901 USPL1Q5W0Q7 1092 aa18.44■□□□□ 0.54
NUP54-216ENST00000514901 C8orf58Q8NAV2 365 aa18.44■□□□□ 0.54
NUP54-216ENST00000514901 ARXQ96QS3 562 aa18.44■□□□□ 0.54
NUP54-216ENST00000514901 SRP68Q9UHB9 627 aaKnown RBP18.44■□□□□ 0.54
NUP54-216ENST00000514901 FANCIQ9NVI1 1328 aa18.44■□□□□ 0.54
NUP54-216ENST00000514901 E9PSI1 815 aa18.43■□□□□ 0.54
NUP54-216ENST00000514901 PIP4K2AP48426 406 aaPredicted RBP18.43■□□□□ 0.54
NUP54-216ENST00000514901 DZIP3Q86Y13 1208 aaKnown RBP18.43■□□□□ 0.54
NUP54-216ENST00000514901 DDX21Q9NR30 783 aaKnown RBP eCLIP18.43■□□□□ 0.54
NUP54-216ENST00000514901 TBC1D2BQ9UPU7 963 aa18.43■□□□□ 0.54
NUP54-216ENST00000514901 ELL2O00472 640 aaPredicted RBP18.42■□□□□ 0.54
NUP54-216ENST00000514901 MYL6BP14649 208 aa18.42■□□□□ 0.54
NUP54-216ENST00000514901 PDIA6Q15084 440 aa18.42■□□□□ 0.54
NUP54-216ENST00000514901 DBF4Q9UBU7 674 aaPredicted RBP18.42■□□□□ 0.54
NUP54-216ENST00000514901 COL24A1Q17RW2 1714 aa18.42■□□□□ 0.54
NUP54-216ENST00000514901 MMP10P09238 476 aa18.41■□□□□ 0.54
NUP54-216ENST00000514901 FKBP8Q14318 412 aa18.41■□□□□ 0.54
NUP54-216ENST00000514901 TWISTNBQ3B726 338 aaPredicted RBP18.41■□□□□ 0.54
NUP54-216ENST00000514901 CCDC30Q5VVM6 783 aa18.41■□□□□ 0.54
NUP54-216ENST00000514901 CLEC4GQ6UXB4 293 aa18.41■□□□□ 0.54
NUP54-216ENST00000514901 NECTIN2Q92692 538 aa18.41■□□□□ 0.54
NUP54-216ENST00000514901 SPINK5Q9NQ38 1064 aaPredicted RBP18.41■□□□□ 0.54
NUP54-216ENST00000514901 ZNF652Q9Y2D9 606 aa18.41■□□□□ 0.54
NUP54-216ENST00000514901 C4AP0C0L4 1744 aa18.4■□□□□ 0.54
NUP54-216ENST00000514901 ERVV-1B6SEH8 477 aa18.4■□□□□ 0.54
NUP54-216ENST00000514901 CAMTA2O94983 1202 aa18.4■□□□□ 0.54
NUP54-216ENST00000514901 KIF6Q6ZMV9 814 aa18.4■□□□□ 0.54
NUP54-216ENST00000514901 TSPYL6Q8N831 410 aa18.4■□□□□ 0.54
NUP54-216ENST00000514901 HYPKQ9NX55 129 aa18.4■□□□□ 0.54
NUP54-216ENST00000514901 TM4SF1P30408 202 aa18.39■□□□□ 0.53
NUP54-216ENST00000514901 SLFN5Q08AF3 891 aa18.39■□□□□ 0.53
NUP54-216ENST00000514901 BCL2L12Q9HB09 334 aa18.39■□□□□ 0.53
NUP54-216ENST00000514901 CHPF2Q9P2E5 772 aa18.39■□□□□ 0.53
NUP54-216ENST00000514901 PARP3Q9Y6F1 533 aa18.39■□□□□ 0.53
NUP54-216ENST00000514901 HNRNPUQ00839 825 aaKnown RBP eCLIP18.38■□□□□ 0.53
NUP54-216ENST00000514901 EXOSC9Q06265 439 aaKnown RBP18.38■□□□□ 0.53
NUP54-216ENST00000514901 PROSER3Q2NL68 480 aa18.38■□□□□ 0.53
NUP54-216ENST00000514901 LRP10Q7Z4F1 713 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 187.1 ms