RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 ZBTB1Q9Y2K1 713 aa12.84□□□□□ -0.35
RNF4-221ENST00000513643 USP42Q9H9J4 1324 aaKnown RBP12.84□□□□□ -0.35
RNF4-221ENST00000513643 MAPK8IP3Q9UPT6 1336 aa12.84□□□□□ -0.35
RNF4-221ENST00000513643 WDR43Q15061 677 aaKnown RBP eCLIP12.83□□□□□ -0.36
RNF4-221ENST00000513643 PNISRQ8TF01 805 aaKnown RBP12.83□□□□□ -0.36
RNF4-221ENST00000513643 THUMPD2Q9BTF0 503 aaKnown RBP12.83□□□□□ -0.36
RNF4-221ENST00000513643 CD2APQ9Y5K6 639 aa12.83□□□□□ -0.36
RNF4-221ENST00000513643 USP16Q9Y5T5 823 aa12.83□□□□□ -0.36
RNF4-221ENST00000513643 DLG5Q8TDM6 1919 aa12.82□□□□□ -0.36
RNF4-221ENST00000513643 PRAMEF22A3QJZ6 481 aa12.82□□□□□ -0.36
RNF4-221ENST00000513643 SNRPA1P09661 255 aaKnown RBP12.82□□□□□ -0.36
RNF4-221ENST00000513643 TM4SF1P30408 202 aa12.82□□□□□ -0.36
RNF4-221ENST00000513643 RFC4P35249 363 aa12.82□□□□□ -0.36
RNF4-221ENST00000513643 EIF4A1P60842 406 aaKnown RBP12.82□□□□□ -0.36
RNF4-221ENST00000513643 CCDC146Q8IYE0 955 aa12.82□□□□□ -0.36
RNF4-221ENST00000513643 BCL2L12Q9HB09 334 aa12.82□□□□□ -0.36
RNF4-221ENST00000513643 MIS18AQ9NYP9 233 aa12.82□□□□□ -0.36
RNF4-221ENST00000513643 IL6STP40189 918 aaPredicted RBP12.81□□□□□ -0.36
RNF4-221ENST00000513643 SRP68Q9UHB9 627 aaKnown RBP12.81□□□□□ -0.36
RNF4-221ENST00000513643 NARFQ9UHQ1 456 aa12.81□□□□□ -0.36
RNF4-221ENST00000513643 CHL1O00533 1208 aa12.8□□□□□ -0.36
RNF4-221ENST00000513643 GIGYF1O75420 1035 aaPredicted RBP12.8□□□□□ -0.36
RNF4-221ENST00000513643 A1BGP04217 495 aa12.8□□□□□ -0.36
RNF4-221ENST00000513643 MMP10P09238 476 aa12.8□□□□□ -0.36
RNF4-221ENST00000513643 LMOD3Q0VAK6 560 aa12.8□□□□□ -0.36
RNF4-221ENST00000513643 FKBP8Q14318 412 aa12.8□□□□□ -0.36
RNF4-221ENST00000513643 NBPF26B4DH59 902 aa12.79□□□□□ -0.36
RNF4-221ENST00000513643 ANP32CO43423 234 aa12.79□□□□□ -0.36
RNF4-221ENST00000513643 NCBP3Q53F19 620 aaKnown RBP12.79□□□□□ -0.36
RNF4-221ENST00000513643 NBPF10Q6P3W6 841 aaKnown RBP12.79□□□□□ -0.36
RNF4-221ENST00000513643 NBPF15Q8N660 670 aa12.79□□□□□ -0.36
RNF4-221ENST00000513643 NLGN2Q8NFZ4 835 aa12.79□□□□□ -0.36
RNF4-221ENST00000513643 RRP7AQ9Y3A4 280 aaKnown RBP12.79□□□□□ -0.36
RNF4-221ENST00000513643 COL15A1P39059 1388 aa12.79□□□□□ -0.36
RNF4-221ENST00000513643 ZNF853P0CG23 659 aa12.78□□□□□ -0.36
RNF4-221ENST00000513643 CANXP27824 592 aaKnown RBP12.78□□□□□ -0.36
RNF4-221ENST00000513643 DDR1Q08345 913 aa12.78□□□□□ -0.36
RNF4-221ENST00000513643 USPL1Q5W0Q7 1092 aa12.78□□□□□ -0.36
RNF4-221ENST00000513643 C4AP0C0L4 1744 aa12.78□□□□□ -0.36
RNF4-221ENST00000513643 KDM3BQ7LBC6 1761 aa12.77□□□□□ -0.36
RNF4-221ENST00000513643 A0A087WZG4 1122 aa12.77□□□□□ -0.37
RNF4-221ENST00000513643 POLRMTO00411 1230 aaKnown RBP12.77□□□□□ -0.37
RNF4-221ENST00000513643 APAF1O14727 1248 aa12.77□□□□□ -0.37
RNF4-221ENST00000513643 RGL2O15211 777 aa12.77□□□□□ -0.37
RNF4-221ENST00000513643 ZPR1O75312 459 aa12.76□□□□□ -0.37
RNF4-221ENST00000513643 CAMTA2O94983 1202 aa12.76□□□□□ -0.37
RNF4-221ENST00000513643 NFIXQ14938 502 aa12.76□□□□□ -0.37
RNF4-221ENST00000513643 LRP10Q7Z4F1 713 aa12.76□□□□□ -0.37
RNF4-221ENST00000513643 NEUROD2Q15784 382 aa12.75□□□□□ -0.37
RNF4-221ENST00000513643 CCDC27Q2M243 656 aa12.75□□□□□ -0.37
RNF4-221ENST00000513643 C10orf71Q711Q0 1435 aa12.75□□□□□ -0.37
RNF4-221ENST00000513643 CFAP44Q96MT7 982 aa12.75□□□□□ -0.37
RNF4-221ENST00000513643 TGFB2P61812 414 aa12.74□□□□□ -0.37
RNF4-221ENST00000513643 PDIA6Q15084 440 aa12.74□□□□□ -0.37
RNF4-221ENST00000513643 MRS2Q9HD23 443 aa12.74□□□□□ -0.37
RNF4-221ENST00000513643 TSPYL4Q9UJ04 414 aa12.74□□□□□ -0.37
RNF4-221ENST00000513643 TBC1D2BQ9UPU7 963 aa12.74□□□□□ -0.37
RNF4-221ENST00000513643 ERBB4Q15303 1308 aa12.73□□□□□ -0.37
RNF4-221ENST00000513643 KCNA3P22001 575 aa12.73□□□□□ -0.37
RNF4-221ENST00000513643 CLEC4GQ6UXB4 293 aa12.73□□□□□ -0.37
RNF4-221ENST00000513643 PARP3Q9Y6F1 533 aa12.73□□□□□ -0.37
RNF4-221ENST00000513643 KIF13BQ9NQT8 1826 aa12.73□□□□□ -0.37
RNF4-221ENST00000513643 YBX3P16989 372 aaKnown RBP eCLIP12.72□□□□□ -0.37
RNF4-221ENST00000513643 PIP4K2AP48426 406 aaPredicted RBP12.72□□□□□ -0.37
RNF4-221ENST00000513643 PXDNLA1KZ92 1463 aa12.72□□□□□ -0.37
RNF4-221ENST00000513643 HOXB7P09629 217 aa12.71□□□□□ -0.37
RNF4-221ENST00000513643 TBC1D9BQ66K14 1250 aa12.71□□□□□ -0.37
RNF4-221ENST00000513643 DZIP3Q86Y13 1208 aaKnown RBP12.71□□□□□ -0.37
RNF4-221ENST00000513643 IFT57Q9NWB7 429 aa12.71□□□□□ -0.37
RNF4-221ENST00000513643 KIAA1551Q9HCM1 1747 aa12.71□□□□□ -0.38
RNF4-221ENST00000513643 NRXN2Q9P2S2 1712 aa12.71□□□□□ -0.38
RNF4-221ENST00000513643 ERVV-1B6SEH8 477 aa12.7□□□□□ -0.38
RNF4-221ENST00000513643 SERPINB2P05120 415 aa12.7□□□□□ -0.38
RNF4-221ENST00000513643 KRT24Q2M2I5 525 aa12.7□□□□□ -0.38
RNF4-221ENST00000513643 WWC1Q8IX03 1113 aa12.7□□□□□ -0.38
RNF4-221ENST00000513643 KLHL34Q8N239 644 aa12.7□□□□□ -0.38
RNF4-221ENST00000513643 MBIPQ9NS73 344 aa12.7□□□□□ -0.38
RNF4-221ENST00000513643 DCAF8L1A6NGE4 600 aa12.69□□□□□ -0.38
RNF4-221ENST00000513643 SCN7AQ01118 1682 aa12.68□□□□□ -0.38
RNF4-221ENST00000513643 A0A0G2JLW4 131 aa12.68□□□□□ -0.38
RNF4-221ENST00000513643 GRIN3BO60391 1043 aa12.68□□□□□ -0.38
RNF4-221ENST00000513643 DPEP1P16444 411 aa12.68□□□□□ -0.38
RNF4-221ENST00000513643 GNAI1P63096 354 aa12.68□□□□□ -0.38
RNF4-221ENST00000513643 CALD1Q05682 793 aaKnown RBP12.68□□□□□ -0.38
RNF4-221ENST00000513643 HLFQ16534 295 aa12.68□□□□□ -0.38
RNF4-221ENST00000513643 GPR162Q16538 588 aa12.68□□□□□ -0.38
RNF4-221ENST00000513643 PROSER3Q2NL68 480 aa12.68□□□□□ -0.38
RNF4-221ENST00000513643 LAMB4A4D0S4 1761 aa12.68□□□□□ -0.38
RNF4-221ENST00000513643 IL16Q14005 1332 aa12.67□□□□□ -0.38
RNF4-221ENST00000513643 PRR5LQ6MZQ0 368 aa12.67□□□□□ -0.38
RNF4-221ENST00000513643 TTLL7Q6ZT98 887 aa12.67□□□□□ -0.38
RNF4-221ENST00000513643 CARMIL3Q8ND23 1372 aa12.67□□□□□ -0.38
RNF4-221ENST00000513643 MAP3K15Q6ZN16 1313 aa12.66□□□□□ -0.38
RNF4-221ENST00000513643 KLRG2A4D1S0 409 aaPredicted RBP12.66□□□□□ -0.38
RNF4-221ENST00000513643 SETDB2Q96T68 719 aa12.66□□□□□ -0.38
RNF4-221ENST00000513643 BRIP1Q9BX63 1249 aa12.66□□□□□ -0.38
RNF4-221ENST00000513643 DDX21Q9NR30 783 aaKnown RBP eCLIP12.66□□□□□ -0.38
RNF4-221ENST00000513643 ZNF330Q9Y3S2 320 aaPredicted RBP12.66□□□□□ -0.38
RNF4-221ENST00000513643 BCORQ6W2J9 1755 aa12.66□□□□□ -0.38
RNF4-221ENST00000513643 AFDNP55196 1824 aaKnown RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms