RNA–Protein interactions for RNA: ENST00000494646.1

MSH5-218, Transcript of mutS homolog 5, humanhuman

TSL 4

Gene MSH5, Length 528 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-218ENST00000494646 VSIG10Q8N0Z9 540 aa12.81□□□□□ -0.36
MSH5-218ENST00000494646 ZNF496Q96IT1 587 aaPredicted RBP12.81□□□□□ -0.36
MSH5-218ENST00000494646 KCPQ6ZWJ8 1503 aa12.81□□□□□ -0.36
MSH5-218ENST00000494646 SOS1Q07889 1333 aaPredicted RBP12.81□□□□□ -0.36
MSH5-218ENST00000494646 KIF13BQ9NQT8 1826 aa12.81□□□□□ -0.36
MSH5-218ENST00000494646 SIPA1L3O60292 1781 aaPredicted RBP12.8□□□□□ -0.36
MSH5-218ENST00000494646 STARD3NLO95772 234 aa12.8□□□□□ -0.36
MSH5-218ENST00000494646 DPEP1P16444 411 aa12.8□□□□□ -0.36
MSH5-218ENST00000494646 TM4SF1P30408 202 aa12.8□□□□□ -0.36
MSH5-218ENST00000494646 DDR1Q08345 913 aa12.8□□□□□ -0.36
MSH5-218ENST00000494646 RTF1Q92541 710 aaKnown RBP12.8□□□□□ -0.36
MSH5-218ENST00000494646 BCS1LQ9Y276 419 aa12.8□□□□□ -0.36
MSH5-218ENST00000494646 UBR2Q8IWV8 1755 aa12.79□□□□□ -0.36
MSH5-218ENST00000494646 DDX10Q13206 875 aaKnown RBP12.79□□□□□ -0.36
MSH5-218ENST00000494646 NARFQ9UHQ1 456 aa12.79□□□□□ -0.36
MSH5-218ENST00000494646 ZNF330Q9Y3S2 320 aaPredicted RBP12.79□□□□□ -0.36
MSH5-218ENST00000494646 A1BGP04217 495 aa12.78□□□□□ -0.36
MSH5-218ENST00000494646 FMNL2Q96PY5 1086 aa12.78□□□□□ -0.36
MSH5-218ENST00000494646 AFDNP55196 1824 aaKnown RBP12.78□□□□□ -0.36
MSH5-218ENST00000494646 HEG1Q9ULI3 1381 aa12.78□□□□□ -0.36
MSH5-218ENST00000494646 KIAA1551Q9HCM1 1747 aa12.77□□□□□ -0.36
MSH5-218ENST00000494646 POLRMTO00411 1230 aaKnown RBP12.77□□□□□ -0.37
MSH5-218ENST00000494646 KCNA3P22001 575 aa12.77□□□□□ -0.37
MSH5-218ENST00000494646 BICDL1Q6ZP65 573 aa12.77□□□□□ -0.37
MSH5-218ENST00000494646 ARHGAP27Q6ZUM4 889 aa12.77□□□□□ -0.37
MSH5-218ENST00000494646 ZNF526Q8TF50 670 aaPredicted RBP12.77□□□□□ -0.37
MSH5-218ENST00000494646 TEX13AQ9BXU3 409 aaPredicted RBP12.77□□□□□ -0.37
MSH5-218ENST00000494646 BCL2L12Q9HB09 334 aa12.77□□□□□ -0.37
MSH5-218ENST00000494646 MIS18AQ9NYP9 233 aa12.77□□□□□ -0.37
MSH5-218ENST00000494646 TBC1D2BQ9UPU7 963 aa12.77□□□□□ -0.37
MSH5-218ENST00000494646 USP16Q9Y5T5 823 aa12.77□□□□□ -0.37
MSH5-218ENST00000494646 DLG5Q8TDM6 1919 aa12.77□□□□□ -0.37
MSH5-218ENST00000494646 COL15A1P39059 1388 aa12.77□□□□□ -0.37
MSH5-218ENST00000494646 PXDNLA1KZ92 1463 aa12.77□□□□□ -0.37
MSH5-218ENST00000494646 PRAMEF22A3QJZ6 481 aa12.76□□□□□ -0.37
MSH5-218ENST00000494646 CHRNA5P30532 468 aa12.76□□□□□ -0.37
MSH5-218ENST00000494646 PIP4K2AP48426 406 aaPredicted RBP12.76□□□□□ -0.37
MSH5-218ENST00000494646 EIF5P55010 431 aaKnown RBP12.76□□□□□ -0.37
MSH5-218ENST00000494646 NFIXQ14938 502 aa12.76□□□□□ -0.37
MSH5-218ENST00000494646 CEMIPQ8WUJ3 1361 aa12.76□□□□□ -0.37
MSH5-218ENST00000494646 C10orf71Q711Q0 1435 aa12.76□□□□□ -0.37
MSH5-218ENST00000494646 SERPINB2P05120 415 aa12.75□□□□□ -0.37
MSH5-218ENST00000494646 NEFMP07197 916 aa12.75□□□□□ -0.37
MSH5-218ENST00000494646 C1QTNF8P60827 252 aa12.75□□□□□ -0.37
MSH5-218ENST00000494646 PIAS4Q8N2W9 510 aaPredicted RBP12.75□□□□□ -0.37
MSH5-218ENST00000494646 PIM2Q9P1W9 311 aa12.75□□□□□ -0.37
MSH5-218ENST00000494646 A0A087WZG4 1122 aa12.74□□□□□ -0.37
MSH5-218ENST00000494646 GIGYF1O75420 1035 aaPredicted RBP12.74□□□□□ -0.37
MSH5-218ENST00000494646 TAF7Q15545 349 aaPredicted RBP12.74□□□□□ -0.37
MSH5-218ENST00000494646 NPM2Q86SE8 214 aaKnown RBP12.74□□□□□ -0.37
MSH5-218ENST00000494646 BRCA1P38398 1863 aaKnown RBP12.74□□□□□ -0.37
MSH5-218ENST00000494646 ATP10DQ9P241 1426 aa12.73□□□□□ -0.37
MSH5-218ENST00000494646 HTATSF1O43719 755 aaKnown RBP12.73□□□□□ -0.37
MSH5-218ENST00000494646 IL6STP40189 918 aaPredicted RBP12.73□□□□□ -0.37
MSH5-218ENST00000494646 TBC1D9BQ66K14 1250 aa12.73□□□□□ -0.37
MSH5-218ENST00000494646 CCDC24Q8N4L8 307 aa12.73□□□□□ -0.37
MSH5-218ENST00000494646 PLEKHF1Q96S99 279 aa12.73□□□□□ -0.37
MSH5-218ENST00000494646 SNRPA1P09661 255 aaKnown RBP12.72□□□□□ -0.37
MSH5-218ENST00000494646 RALBP1Q15311 655 aa12.72□□□□□ -0.37
MSH5-218ENST00000494646 DALRD3Q5D0E6 543 aaKnown RBP12.72□□□□□ -0.37
MSH5-218ENST00000494646 THUMPD2Q9BTF0 503 aaKnown RBP12.72□□□□□ -0.37
MSH5-218ENST00000494646 GPBP1L1Q9HC44 474 aaPredicted RBP12.72□□□□□ -0.37
MSH5-218ENST00000494646 NFE2L2Q16236 605 aa12.71□□□□□ -0.37
MSH5-218ENST00000494646 ARFGEF1Q9Y6D6 1849 aa12.71□□□□□ -0.38
MSH5-218ENST00000494646 DZIP3Q86Y13 1208 aaKnown RBP12.7□□□□□ -0.38
MSH5-218ENST00000494646 C2CD5Q86YS7 1000 aa12.7□□□□□ -0.38
MSH5-218ENST00000494646 PNNQ9H307 717 aaKnown RBP12.7□□□□□ -0.38
MSH5-218ENST00000494646 MAPK8IP3Q9UPT6 1336 aa12.69□□□□□ -0.38
MSH5-218ENST00000494646 SENP3-EIF4A1A0A087X0R7 540 aa12.69□□□□□ -0.38
MSH5-218ENST00000494646 CAMTA2O94983 1202 aa12.69□□□□□ -0.38
MSH5-218ENST00000494646 NGEFQ8N5V2 710 aa12.69□□□□□ -0.38
MSH5-218ENST00000494646 FOXD4L1Q9NU39 408 aa12.69□□□□□ -0.38
MSH5-218ENST00000494646 CCDC88AQ3V6T2 1871 aa12.69□□□□□ -0.38
MSH5-218ENST00000494646 SBF1O95248 1867 aa12.68□□□□□ -0.38
MSH5-218ENST00000494646 NBPF26B4DH59 902 aa12.68□□□□□ -0.38
MSH5-218ENST00000494646 H0YIN7 160 aa12.68□□□□□ -0.38
MSH5-218ENST00000494646 RIPK4P57078 832 aa12.68□□□□□ -0.38
MSH5-218ENST00000494646 C9orf131Q5VYM1 1079 aa12.68□□□□□ -0.38
MSH5-218ENST00000494646 NBPF10Q6P3W6 841 aaKnown RBP12.68□□□□□ -0.38
MSH5-218ENST00000494646 NBPF15Q8N660 670 aa12.68□□□□□ -0.38
MSH5-218ENST00000494646 CNKSR2Q8WXI2 1034 aa12.68□□□□□ -0.38
MSH5-218ENST00000494646 SETDB2Q96T68 719 aa12.68□□□□□ -0.38
MSH5-218ENST00000494646 NRXN2Q9P2S2 1712 aa12.68□□□□□ -0.38
MSH5-218ENST00000494646 ADCY9O60503 1353 aa12.68□□□□□ -0.38
MSH5-218ENST00000494646 CARMIL3Q8ND23 1372 aa12.68□□□□□ -0.38
MSH5-218ENST00000494646 NPHP1O15259 732 aa12.67□□□□□ -0.38
MSH5-218ENST00000494646 PRR5LQ6MZQ0 368 aa12.67□□□□□ -0.38
MSH5-218ENST00000494646 CCDC146Q8IYE0 955 aa12.67□□□□□ -0.38
MSH5-218ENST00000494646 ZNF622Q969S3 477 aaKnown RBP eCLIP12.67□□□□□ -0.38
MSH5-218ENST00000494646 ZNF219Q9P2Y4 722 aaPredicted RBP12.67□□□□□ -0.38
MSH5-218ENST00000494646 ANKRD31Q8N7Z5 1873 aa12.66□□□□□ -0.38
MSH5-218ENST00000494646 FAM177BA6PVY3 158 aa12.66□□□□□ -0.38
MSH5-218ENST00000494646 EIF4A1P60842 406 aaKnown RBP12.66□□□□□ -0.38
MSH5-218ENST00000494646 NEUROD2Q15784 382 aa12.66□□□□□ -0.38
MSH5-218ENST00000494646 TTLL6Q8N841 843 aa12.66□□□□□ -0.38
MSH5-218ENST00000494646 PNISRQ8TF01 805 aaKnown RBP12.66□□□□□ -0.38
MSH5-218ENST00000494646 RRP7AQ9Y3A4 280 aaKnown RBP12.66□□□□□ -0.38
MSH5-218ENST00000494646 MYBBP1AQ9BQG0 1328 aaKnown RBP12.65□□□□□ -0.38
MSH5-218ENST00000494646 HLFQ16534 295 aa12.65□□□□□ -0.38
MSH5-218ENST00000494646 BRIP1Q9BX63 1249 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms