RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-222ENST00000493919 ITGB4P16144 1822 aa14.6□□□□□ -0.07
BRCA1-222ENST00000493919 HSP90AB1P08238 724 aaKnown RBP14.6□□□□□ -0.07
BRCA1-222ENST00000493919 MPRIPQ6WCQ1 1025 aa14.6□□□□□ -0.07
BRCA1-222ENST00000493919 GAS2L2Q8NHY3 880 aa14.6□□□□□ -0.07
BRCA1-222ENST00000493919 PNNQ9H307 717 aaKnown RBP14.6□□□□□ -0.07
BRCA1-222ENST00000493919 AKAP4Q5JQC9 854 aa14.59□□□□□ -0.07
BRCA1-222ENST00000493919 VIRMAQ69YN4 1812 aaKnown RBP14.59□□□□□ -0.07
BRCA1-222ENST00000493919 MAP3K5Q99683 1374 aa14.59□□□□□ -0.07
BRCA1-222ENST00000493919 OS9Q13438 667 aaPredicted RBP14.58□□□□□ -0.07
BRCA1-222ENST00000493919 NKX1-1Q15270 411 aaPredicted RBP14.58□□□□□ -0.07
BRCA1-222ENST00000493919 CCDC146Q8IYE0 955 aa14.58□□□□□ -0.07
BRCA1-222ENST00000493919 DCAF5Q96JK2 942 aa14.58□□□□□ -0.07
BRCA1-222ENST00000493919 ZBTB47Q9UFB7 747 aaPredicted RBP14.58□□□□□ -0.07
BRCA1-222ENST00000493919 NBPF20Q3BBV1 942 aa14.58□□□□□ -0.08
BRCA1-222ENST00000493919 SCN11AQ9UI33 1791 aa14.58□□□□□ -0.08
BRCA1-222ENST00000493919 TMOD3Q9NYL9 352 aa14.57□□□□□ -0.08
BRCA1-222ENST00000493919 ADAMTS8Q9UP79 889 aa14.57□□□□□ -0.08
BRCA1-222ENST00000493919 EZH2Q15910 746 aaKnown RBP14.56□□□□□ -0.08
BRCA1-222ENST00000493919 RGPD3A6NKT7 1758 aaPredicted RBP14.56□□□□□ -0.08
BRCA1-222ENST00000493919 RGPD4Q7Z3J3 1758 aa14.56□□□□□ -0.08
BRCA1-222ENST00000493919 GNAT3A8MTJ3 354 aa14.56□□□□□ -0.08
BRCA1-222ENST00000493919 SLC20A2Q08357 652 aa14.56□□□□□ -0.08
BRCA1-222ENST00000493919 PPP4R3BQ5MIZ7 849 aa14.56□□□□□ -0.08
BRCA1-222ENST00000493919 DDRGK1Q96HY6 314 aa14.56□□□□□ -0.08
BRCA1-222ENST00000493919 PLEKHF1Q96S99 279 aa14.56□□□□□ -0.08
BRCA1-222ENST00000493919 KIF20AO95235 890 aa14.55□□□□□ -0.08
BRCA1-222ENST00000493919 CABP4P57796 275 aa14.55□□□□□ -0.08
BRCA1-222ENST00000493919 RREB1Q92766 1687 aa14.55□□□□□ -0.08
BRCA1-222ENST00000493919 DLG5Q8TDM6 1919 aa14.55□□□□□ -0.08
BRCA1-222ENST00000493919 LGR6Q9HBX8 967 aa14.54□□□□□ -0.08
BRCA1-222ENST00000493919 CWC22Q9HCG8 908 aaKnown RBP14.54□□□□□ -0.08
BRCA1-222ENST00000493919 ADAMTS7Q9UKP4 1686 aa14.54□□□□□ -0.08
BRCA1-222ENST00000493919 RNMTO43148 476 aaKnown RBP14.54□□□□□ -0.08
BRCA1-222ENST00000493919 PIGBQ92521 554 aa14.54□□□□□ -0.08
BRCA1-222ENST00000493919 RTF1Q92541 710 aaKnown RBP14.54□□□□□ -0.08
BRCA1-222ENST00000493919 ERVV-2B6SEH9 535 aa14.53□□□□□ -0.08
BRCA1-222ENST00000493919 CLCN1P35523 988 aa14.53□□□□□ -0.08
BRCA1-222ENST00000493919 CAMKK2Q96RR4 588 aa14.53□□□□□ -0.08
BRCA1-222ENST00000493919 MRC1P22897 1456 aa14.53□□□□□ -0.08
BRCA1-222ENST00000493919 NUP188Q5SRE5 1749 aa14.53□□□□□ -0.08
BRCA1-222ENST00000493919 PLSCR1O15162 318 aa14.53□□□□□ -0.08
BRCA1-222ENST00000493919 PALLDQ8WX93 1383 aa14.53□□□□□ -0.08
BRCA1-222ENST00000493919 RUNDC1Q96C34 613 aa14.53□□□□□ -0.08
BRCA1-222ENST00000493919 RRP7AQ9Y3A4 280 aaKnown RBP14.53□□□□□ -0.08
BRCA1-222ENST00000493919 NEUROD2Q15784 382 aa14.52□□□□□ -0.09
BRCA1-222ENST00000493919 NFE2L2Q16236 605 aa14.52□□□□□ -0.09
BRCA1-222ENST00000493919 FAM9BQ8IZU0 186 aa14.52□□□□□ -0.09
BRCA1-222ENST00000493919 NFATC2IPQ8NCF5 419 aa14.52□□□□□ -0.09
BRCA1-222ENST00000493919 LY75O60449 1722 aa14.52□□□□□ -0.09
BRCA1-222ENST00000493919 DMTNQ08495 405 aa14.51□□□□□ -0.09
BRCA1-222ENST00000493919 TEFQ10587 303 aa14.51□□□□□ -0.09
BRCA1-222ENST00000493919 DCTN1Q14203 1278 aa14.51□□□□□ -0.09
BRCA1-222ENST00000493919 TXNRD1Q16881 649 aa14.51□□□□□ -0.09
BRCA1-222ENST00000493919 MCM10Q7L590 875 aa14.51□□□□□ -0.09
BRCA1-222ENST00000493919 PNISRQ8TF01 805 aaKnown RBP14.51□□□□□ -0.09
BRCA1-222ENST00000493919 ZNF526Q8TF50 670 aaPredicted RBP14.51□□□□□ -0.09
BRCA1-222ENST00000493919 YY1AP1Q9H869 796 aa14.51□□□□□ -0.09
BRCA1-222ENST00000493919 SLC52A2Q9HAB3 445 aa14.51□□□□□ -0.09
BRCA1-222ENST00000493919 LAS1LQ9Y4W2 734 aaKnown RBP14.51□□□□□ -0.09
BRCA1-222ENST00000493919 MYCNP04198 464 aaPredicted RBP14.51□□□□□ -0.09
BRCA1-222ENST00000493919 IL17REQ8NFR9 667 aa14.51□□□□□ -0.09
BRCA1-222ENST00000493919 SENP3-EIF4A1A0A087X0R7 540 aa14.5□□□□□ -0.09
BRCA1-222ENST00000493919 ASAP1Q9ULH1 1129 aa14.5□□□□□ -0.09
BRCA1-222ENST00000493919 KCNQ4P56696 695 aa14.49□□□□□ -0.09
BRCA1-222ENST00000493919 RIPK4P57078 832 aa14.49□□□□□ -0.09
BRCA1-222ENST00000493919 VGLL3A8MV65 326 aa14.49□□□□□ -0.09
BRCA1-222ENST00000493919 TMPOP42166 694 aaKnown RBP14.49□□□□□ -0.09
BRCA1-222ENST00000493919 NBPF11Q86T75 865 aa14.49□□□□□ -0.09
BRCA1-222ENST00000493919 SMARCC1Q92922 1105 aaPredicted RBP14.49□□□□□ -0.09
BRCA1-222ENST00000493919 CCNL1Q9UK58 526 aaPredicted RBP14.49□□□□□ -0.09
BRCA1-222ENST00000493919 PAPPAQ13219 1627 aa14.48□□□□□ -0.09
BRCA1-222ENST00000493919 SIPA1L3O60292 1781 aaPredicted RBP14.48□□□□□ -0.09
BRCA1-222ENST00000493919 CEMIPQ8WUJ3 1361 aa14.48□□□□□ -0.09
BRCA1-222ENST00000493919 SRCAPQ6ZRS2 3230 aa14.48□□□□□ -0.09
BRCA1-222ENST00000493919 MTERF4Q7Z6M4 381 aaKnown RBP14.48□□□□□ -0.09
BRCA1-222ENST00000493919 PROM2Q8N271 834 aa14.48□□□□□ -0.09
BRCA1-222ENST00000493919 THUMPD2Q9BTF0 503 aaKnown RBP14.48□□□□□ -0.09
BRCA1-222ENST00000493919 ATG3Q9NT62 314 aa14.48□□□□□ -0.09
BRCA1-222ENST00000493919 APAF1O14727 1248 aa14.47□□□□□ -0.09
BRCA1-222ENST00000493919 RBM42Q9BTD8 480 aaKnown RBP14.47□□□□□ -0.09
BRCA1-222ENST00000493919 TTC36A6NLP5 189 aa14.47□□□□□ -0.09
BRCA1-222ENST00000493919 HTATSF1O43719 755 aaKnown RBP14.47□□□□□ -0.09
BRCA1-222ENST00000493919 SLC39A6Q13433 755 aa14.47□□□□□ -0.09
BRCA1-222ENST00000493919 LRRC4BQ9NT99 713 aa14.47□□□□□ -0.09
BRCA1-222ENST00000493919 C5P01031 1676 aa14.46□□□□□ -0.09
BRCA1-222ENST00000493919 CCER2I3L3R5 266 aa14.46□□□□□ -0.09
BRCA1-222ENST00000493919 PTCD1O75127 700 aaKnown RBP14.46□□□□□ -0.09
BRCA1-222ENST00000493919 LMOD3Q0VAK6 560 aa14.46□□□□□ -0.09
BRCA1-222ENST00000493919 DNTTIP2Q5QJE6 756 aaKnown RBP14.46□□□□□ -0.09
BRCA1-222ENST00000493919 LOC102724428A0A0B4J2F2 783 aa14.45□□□□□ -0.1
BRCA1-222ENST00000493919 GOLGA6L3A6NEY3 463 aa14.45□□□□□ -0.1
BRCA1-222ENST00000493919 SIK1P57059 783 aa14.45□□□□□ -0.1
BRCA1-222ENST00000493919 SLC27A3Q5K4L6 730 aa14.45□□□□□ -0.1
BRCA1-222ENST00000493919 EGFL6Q8IUX8 553 aa14.45□□□□□ -0.1
BRCA1-222ENST00000493919 TTC5Q8N0Z6 440 aa14.45□□□□□ -0.1
BRCA1-222ENST00000493919 RRAGDQ9NQL2 400 aaPredicted RBP14.45□□□□□ -0.1
BRCA1-222ENST00000493919 GEMIN8Q9NWZ8 242 aaKnown RBP14.45□□□□□ -0.1
BRCA1-222ENST00000493919 BTBD11A6QL63 1104 aa14.44□□□□□ -0.1
BRCA1-222ENST00000493919 NBPF14Q5TI25 921 aa14.44□□□□□ -0.1
BRCA1-222ENST00000493919 UBR2Q8IWV8 1755 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms