RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 CEP350Q5VT06 3117 aa16.63■□□□□ 0.25
UPF3A-210ENST00000493727 NUDT7P0C024 238 aa16.63■□□□□ 0.25
UPF3A-210ENST00000493727 LY75O60449 1722 aa16.62■□□□□ 0.25
UPF3A-210ENST00000493727 ANKRD24Q8TF21 1146 aa16.62■□□□□ 0.25
UPF3A-210ENST00000493727 DOT1LQ8TEK3 1739 aa16.62■□□□□ 0.25
UPF3A-210ENST00000493727 EVI5O60447 810 aa16.61■□□□□ 0.25
UPF3A-210ENST00000493727 COG3Q96JB2 828 aa16.61■□□□□ 0.25
UPF3A-210ENST00000493727 IP6K1Q92551 441 aa16.6■□□□□ 0.25
UPF3A-210ENST00000493727 ANKRD36BQ8N2N9 1353 aa16.6■□□□□ 0.25
UPF3A-210ENST00000493727 C1QTNF8P60827 252 aa16.59■□□□□ 0.25
UPF3A-210ENST00000493727 PDIA6Q15084 440 aa16.59■□□□□ 0.25
UPF3A-210ENST00000493727 DDX10Q13206 875 aaKnown RBP16.58■□□□□ 0.24
UPF3A-210ENST00000493727 MARVELD3Q96A59 401 aa16.58■□□□□ 0.24
UPF3A-210ENST00000493727 PNPLA7Q6ZV29 1317 aa16.58■□□□□ 0.24
UPF3A-210ENST00000493727 RGPD2P0DJD1 1756 aa16.58■□□□□ 0.24
UPF3A-210ENST00000493727 NSD2O96028 1365 aa16.57■□□□□ 0.24
UPF3A-210ENST00000493727 SPDYE16A6NNV3 312 aaPredicted RBP16.57■□□□□ 0.24
UPF3A-210ENST00000493727 SLC27A3Q5K4L6 730 aa16.57■□□□□ 0.24
UPF3A-210ENST00000493727 SLC16A10Q8TF71 515 aa16.57■□□□□ 0.24
UPF3A-210ENST00000493727 SENP3-EIF4A1A0A087X0R7 540 aa16.56■□□□□ 0.24
UPF3A-210ENST00000493727 RTL1A6NKG5 1358 aa16.55■□□□□ 0.24
UPF3A-210ENST00000493727 AMPHP49418 695 aa16.55■□□□□ 0.24
UPF3A-210ENST00000493727 KIF20BQ96Q89 1820 aa16.54■□□□□ 0.24
UPF3A-210ENST00000493727 MAP3K19Q56UN5 1328 aa16.54■□□□□ 0.24
UPF3A-210ENST00000493727 HOXC9P31274 260 aa16.53■□□□□ 0.24
UPF3A-210ENST00000493727 EMP3P54852 163 aa16.53■□□□□ 0.24
UPF3A-210ENST00000493727 GPR162Q16538 588 aa16.53■□□□□ 0.24
UPF3A-210ENST00000493727 LTV1Q96GA3 475 aaPredicted RBP16.53■□□□□ 0.24
UPF3A-210ENST00000493727 LHX6Q9UPM6 363 aa16.53■□□□□ 0.24
UPF3A-210ENST00000493727 MEGF6O75095 1541 aa16.53■□□□□ 0.24
UPF3A-210ENST00000493727 POLD1P28340 1107 aa16.52■□□□□ 0.24
UPF3A-210ENST00000493727 NLGN2Q8NFZ4 835 aa16.51■□□□□ 0.23
UPF3A-210ENST00000493727 DDX54Q8TDD1 881 aaKnown RBP16.51■□□□□ 0.23
UPF3A-210ENST00000493727 SMG6Q86US8 1419 aaKnown RBP16.51■□□□□ 0.23
UPF3A-210ENST00000493727 FYB1O15117 783 aa16.5■□□□□ 0.23
UPF3A-210ENST00000493727 KCNQ4P56696 695 aa16.5■□□□□ 0.23
UPF3A-210ENST00000493727 PANK3Q9H999 370 aa16.5■□□□□ 0.23
UPF3A-210ENST00000493727 C5P01031 1676 aa16.5■□□□□ 0.23
UPF3A-210ENST00000493727 TAF1LQ8IZX4 1826 aa16.49■□□□□ 0.23
UPF3A-210ENST00000493727 PRIM1P49642 420 aaKnown RBP16.49■□□□□ 0.23
UPF3A-210ENST00000493727 TFCP2L1Q9NZI6 479 aa16.49■□□□□ 0.23
UPF3A-210ENST00000493727 KIF24Q5T7B8 1368 aa16.49■□□□□ 0.23
UPF3A-210ENST00000493727 CGNL1Q0VF96 1302 aa16.48■□□□□ 0.23
UPF3A-210ENST00000493727 GIGYF1O75420 1035 aaPredicted RBP16.48■□□□□ 0.23
UPF3A-210ENST00000493727 DIEXFQ68CQ4 756 aaKnown RBP16.48■□□□□ 0.23
UPF3A-210ENST00000493727 GGNBP2Q9H3C7 697 aa16.48■□□□□ 0.23
UPF3A-210ENST00000493727 YBX3P16989 372 aaKnown RBP eCLIP16.47■□□□□ 0.23
UPF3A-210ENST00000493727 ZCRB1Q8TBF4 217 aaKnown RBP16.47■□□□□ 0.23
UPF3A-210ENST00000493727 SYTL4Q96C24 671 aaPredicted RBP16.47■□□□□ 0.23
UPF3A-210ENST00000493727 RRS1Q15050 365 aaKnown RBP16.46■□□□□ 0.23
UPF3A-210ENST00000493727 POTEB3A0JP26 581 aa16.45■□□□□ 0.22
UPF3A-210ENST00000493727 FBLN1P23142 703 aa16.45■□□□□ 0.22
UPF3A-210ENST00000493727 POTEBQ6S5H4 581 aa16.45■□□□□ 0.22
UPF3A-210ENST00000493727 CCNL1Q9UK58 526 aaPredicted RBP16.45■□□□□ 0.22
UPF3A-210ENST00000493727 KNSTRNQ9Y448 316 aa16.45■□□□□ 0.22
UPF3A-210ENST00000493727 INSRP06213 1382 aa16.45■□□□□ 0.22
UPF3A-210ENST00000493727 FLT4P35916 1363 aa16.45■□□□□ 0.22
UPF3A-210ENST00000493727 TOGARAM1Q9Y4F4 1720 aa16.45■□□□□ 0.22
UPF3A-210ENST00000493727 NSD3Q9BZ95 1437 aa16.45■□□□□ 0.22
UPF3A-210ENST00000493727 FAM205CA6NFA0 338 aa16.44■□□□□ 0.22
UPF3A-210ENST00000493727 COL23A1Q86Y22 540 aaPredicted RBP16.44■□□□□ 0.22
UPF3A-210ENST00000493727 RAPGEF4Q8WZA2 1011 aa16.44■□□□□ 0.22
UPF3A-210ENST00000493727 ITGB4P16144 1822 aa16.42■□□□□ 0.22
UPF3A-210ENST00000493727 UBR3Q6ZT12 1888 aa16.42■□□□□ 0.22
UPF3A-210ENST00000493727 SEMA3EO15041 775 aa16.42■□□□□ 0.22
UPF3A-210ENST00000493727 GRIN3BO60391 1043 aa16.42■□□□□ 0.22
UPF3A-210ENST00000493727 HMGB2P26583 209 aaKnown RBP16.42■□□□□ 0.22
UPF3A-210ENST00000493727 FOSBP53539 338 aa16.42■□□□□ 0.22
UPF3A-210ENST00000493727 CNGB1Q14028 1251 aaPredicted RBP16.42■□□□□ 0.22
UPF3A-210ENST00000493727 NBPF6Q5VWK0 638 aa16.42■□□□□ 0.22
UPF3A-210ENST00000493727 NBPF4Q96M43 638 aa16.42■□□□□ 0.22
UPF3A-210ENST00000493727 MAP2P11137 1827 aaKnown RBP16.42■□□□□ 0.22
UPF3A-210ENST00000493727 ADCY9O60503 1353 aa16.41■□□□□ 0.22
UPF3A-210ENST00000493727 TATP17735 454 aaPredicted RBP16.41■□□□□ 0.22
UPF3A-210ENST00000493727 VARS2Q5ST30 1063 aaKnown RBP16.41■□□□□ 0.22
UPF3A-210ENST00000493727 HS3ST6Q96QI5 342 aa16.41■□□□□ 0.22
UPF3A-210ENST00000493727 ATP10DQ9P241 1426 aa16.41■□□□□ 0.22
UPF3A-210ENST00000493727 ANKRD26Q9UPS8 1709 aa16.41■□□□□ 0.22
UPF3A-210ENST00000493727 C4BP0C0L5 1744 aa16.4■□□□□ 0.22
UPF3A-210ENST00000493727 PKD1L3Q7Z443 1732 aa16.4■□□□□ 0.22
UPF3A-210ENST00000493727 POTEGQ6S5H5 508 aa16.4■□□□□ 0.22
UPF3A-210ENST00000493727 DDX12PQ92771 950 aa16.4■□□□□ 0.22
UPF3A-210ENST00000493727 PCDH11XQ9BZA7 1347 aa16.4■□□□□ 0.22
UPF3A-210ENST00000493727 PCDH11YQ9BZA8 1340 aa16.4■□□□□ 0.22
UPF3A-210ENST00000493727 POTEMA6NI47 508 aa16.39■□□□□ 0.21
UPF3A-210ENST00000493727 HSP90AB2PQ58FF8 381 aa16.39■□□□□ 0.21
UPF3A-210ENST00000493727 CARD14Q9BXL6 1004 aa16.39■□□□□ 0.21
UPF3A-210ENST00000493727 ANP32CO43423 234 aa16.38■□□□□ 0.21
UPF3A-210ENST00000493727 MLLT3P42568 568 aaPredicted RBP16.38■□□□□ 0.21
UPF3A-210ENST00000493727 MSL1Q68DK7 614 aa16.38■□□□□ 0.21
UPF3A-210ENST00000493727 USHBP1Q8N6Y0 703 aa16.38■□□□□ 0.21
UPF3A-210ENST00000493727 PCDHGA10Q9Y5H3 936 aa16.38■□□□□ 0.21
UPF3A-210ENST00000493727 PALLDQ8WX93 1383 aa16.38■□□□□ 0.21
UPF3A-210ENST00000493727 TESPA1A2RU30 521 aaPredicted RBP16.37■□□□□ 0.21
UPF3A-210ENST00000493727 PHF14O94880 888 aa16.37■□□□□ 0.21
UPF3A-210ENST00000493727 IFFO2Q5TF58 517 aa16.37■□□□□ 0.21
UPF3A-210ENST00000493727 ZNF454Q8N9F8 522 aa16.37■□□□□ 0.21
UPF3A-210ENST00000493727 CD2APQ9Y5K6 639 aa16.37■□□□□ 0.21
UPF3A-210ENST00000493727 PER1O15534 1290 aaPredicted RBP16.36■□□□□ 0.21
UPF3A-210ENST00000493727 CC2D1BQ5T0F9 858 aaKnown RBP16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 2273.6 ms