RNA–Protein interactions for RNA: ENST00000490081.5

HDAC1-210, Transcript of histone deacetylase 1, humanhuman

TSL 3

Gene HDAC1, Length 1,047 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-210ENST00000490081 LAMB4A4D0S4 1761 aa16.15■□□□□ 0.18
HDAC1-210ENST00000490081 CACNA1FO60840 1977 aa16.15■□□□□ 0.18
HDAC1-210ENST00000490081 TSR2Q969E8 191 aaKnown RBP16.15■□□□□ 0.18
HDAC1-210ENST00000490081 ZNF428Q96B54 188 aa16.15■□□□□ 0.18
HDAC1-210ENST00000490081 MYH14Q7Z406 1995 aaKnown RBP16.15■□□□□ 0.18
HDAC1-210ENST00000490081 DNAJC10Q8IXB1 793 aa16.14■□□□□ 0.17
HDAC1-210ENST00000490081 C8orf58Q8NAV2 365 aa16.14■□□□□ 0.17
HDAC1-210ENST00000490081 ANO8Q9HCE9 1232 aaPredicted RBP16.14■□□□□ 0.17
HDAC1-210ENST00000490081 USP16Q9Y5T5 823 aa16.14■□□□□ 0.17
HDAC1-210ENST00000490081 C4BP0C0L5 1744 aa16.14■□□□□ 0.17
HDAC1-210ENST00000490081 CASZ1Q86V15 1759 aa16.13■□□□□ 0.17
HDAC1-210ENST00000490081 VAMP4O75379 141 aa16.13■□□□□ 0.17
HDAC1-210ENST00000490081 LINC00116Q8NCU8 138 aa16.13■□□□□ 0.17
HDAC1-210ENST00000490081 AKT1S1Q96B36 256 aa16.13■□□□□ 0.17
HDAC1-210ENST00000490081 QSER1Q2KHR3 1735 aa16.12■□□□□ 0.17
HDAC1-210ENST00000490081 EXOSC9Q06265 439 aaKnown RBP16.12■□□□□ 0.17
HDAC1-210ENST00000490081 INTS5Q6P9B9 1019 aaKnown RBP16.12■□□□□ 0.17
HDAC1-210ENST00000490081 RPS6KA4O75676 772 aa16.11■□□□□ 0.17
HDAC1-210ENST00000490081 CRKLP46109 303 aaKnown RBP16.11■□□□□ 0.17
HDAC1-210ENST00000490081 TWISTNBQ3B726 338 aaPredicted RBP16.11■□□□□ 0.17
HDAC1-210ENST00000490081 TSPYL6Q8N831 410 aa16.11■□□□□ 0.17
HDAC1-210ENST00000490081 CCDC87Q9NVE4 849 aa16.11■□□□□ 0.17
HDAC1-210ENST00000490081 UBR3Q6ZT12 1888 aa16.1■□□□□ 0.17
HDAC1-210ENST00000490081 PRAMEF22A3QJZ6 481 aa16.1■□□□□ 0.17
HDAC1-210ENST00000490081 KCNQ4P56696 695 aa16.1■□□□□ 0.17
HDAC1-210ENST00000490081 KRT24Q2M2I5 525 aa16.1■□□□□ 0.17
HDAC1-210ENST00000490081 FLAD1Q8NFF5 587 aa16.1■□□□□ 0.17
HDAC1-210ENST00000490081 ADRA2BP18089 450 aa16.09■□□□□ 0.17
HDAC1-210ENST00000490081 IL6STP40189 918 aaPredicted RBP16.09■□□□□ 0.17
HDAC1-210ENST00000490081 SLC15A2Q16348 729 aa16.09■□□□□ 0.17
HDAC1-210ENST00000490081 CCDC30Q5VVM6 783 aa16.09■□□□□ 0.17
HDAC1-210ENST00000490081 SSFA2P28290 1259 aa16.08■□□□□ 0.16
HDAC1-210ENST00000490081 EIF5P55010 431 aaKnown RBP16.08■□□□□ 0.16
HDAC1-210ENST00000490081 PDIA6Q15084 440 aa16.08■□□□□ 0.16
HDAC1-210ENST00000490081 SPON1Q9HCB6 807 aa16.08■□□□□ 0.16
HDAC1-210ENST00000490081 DDX21Q9NR30 783 aaKnown RBP eCLIP16.08■□□□□ 0.16
HDAC1-210ENST00000490081 STK32BQ9NY57 414 aa16.08■□□□□ 0.16
HDAC1-210ENST00000490081 DBF4Q9UBU7 674 aaPredicted RBP16.08■□□□□ 0.16
HDAC1-210ENST00000490081 NBPF26B4DH59 902 aa16.07■□□□□ 0.16
HDAC1-210ENST00000490081 RGL2O15211 777 aa16.07■□□□□ 0.16
HDAC1-210ENST00000490081 A1BGP04217 495 aa16.07■□□□□ 0.16
HDAC1-210ENST00000490081 HDGFL1Q5TGJ6 251 aa16.07■□□□□ 0.16
HDAC1-210ENST00000490081 NBPF10Q6P3W6 841 aaKnown RBP16.07■□□□□ 0.16
HDAC1-210ENST00000490081 LRP10Q7Z4F1 713 aa16.07■□□□□ 0.16
HDAC1-210ENST00000490081 NBPF15Q8N660 670 aa16.07■□□□□ 0.16
HDAC1-210ENST00000490081 AK7Q96M32 723 aa16.07■□□□□ 0.16
HDAC1-210ENST00000490081 PDGFDQ9GZP0 370 aaPredicted RBP16.07■□□□□ 0.16
HDAC1-210ENST00000490081 RTCBQ9Y3I0 505 aaKnown RBP16.07■□□□□ 0.16
HDAC1-210ENST00000490081 ELL2O00472 640 aaPredicted RBP16.06■□□□□ 0.16
HDAC1-210ENST00000490081 BRPF1P55201 1214 aaPredicted RBP16.06■□□□□ 0.16
HDAC1-210ENST00000490081 ALDH1L2Q3SY69 923 aa16.06■□□□□ 0.16
HDAC1-210ENST00000490081 HYPKQ9NX55 129 aa16.06■□□□□ 0.16
HDAC1-210ENST00000490081 ZBTB1Q9Y2K1 713 aa16.06■□□□□ 0.16
HDAC1-210ENST00000490081 A0A087WZG4 1122 aa16.05■□□□□ 0.16
HDAC1-210ENST00000490081 EIF2S2P20042 333 aaKnown RBP16.05■□□□□ 0.16
HDAC1-210ENST00000490081 ZNF827Q17R98 1081 aa16.05■□□□□ 0.16
HDAC1-210ENST00000490081 TUBGCP6Q96RT7 1819 aa16.04■□□□□ 0.16
HDAC1-210ENST00000490081 GNPATO15228 680 aa16.04■□□□□ 0.16
HDAC1-210ENST00000490081 TRAPPC3LQ5T215 181 aa16.04■□□□□ 0.16
HDAC1-210ENST00000490081 TFCP2L1Q9NZI6 479 aa16.04■□□□□ 0.16
HDAC1-210ENST00000490081 YTHDC1Q96MU7 727 aaKnown RBP16.03■□□□□ 0.16
HDAC1-210ENST00000490081 STK31Q9BXU1 1019 aa16.03■□□□□ 0.16
HDAC1-210ENST00000490081 CANXP27824 592 aaKnown RBP16.02■□□□□ 0.16
HDAC1-210ENST00000490081 PTGER2P43116 358 aa16.02■□□□□ 0.16
HDAC1-210ENST00000490081 SLC16A10Q8TF71 515 aa16.02■□□□□ 0.16
HDAC1-210ENST00000490081 ARHGEF1Q92888 912 aaKnown RBP16.02■□□□□ 0.16
HDAC1-210ENST00000490081 CHPF2Q9P2E5 772 aa16.02■□□□□ 0.16
HDAC1-210ENST00000490081 PNPLA7Q6ZV29 1317 aa16.01■□□□□ 0.15
HDAC1-210ENST00000490081 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.01■□□□□ 0.15
HDAC1-210ENST00000490081 ERVV-1B6SEH8 477 aa16.01■□□□□ 0.15
HDAC1-210ENST00000490081 NARFQ9UHQ1 456 aa16.01■□□□□ 0.15
HDAC1-210ENST00000490081 COL15A1P39059 1388 aa16■□□□□ 0.15
HDAC1-210ENST00000490081 SLC4A2P04920 1241 aa16■□□□□ 0.15
HDAC1-210ENST00000490081 RARSP54136 660 aaKnown RBP16■□□□□ 0.15
HDAC1-210ENST00000490081 CLEC4GQ6UXB4 293 aa16■□□□□ 0.15
HDAC1-210ENST00000490081 NPM2Q86SE8 214 aaKnown RBP16■□□□□ 0.15
HDAC1-210ENST00000490081 AMIGO3Q86WK7 504 aa16■□□□□ 0.15
HDAC1-210ENST00000490081 C4AP0C0L4 1744 aa15.99■□□□□ 0.15
HDAC1-210ENST00000490081 PROSER3Q2NL68 480 aa15.99■□□□□ 0.15
HDAC1-210ENST00000490081 COL23A1Q86Y22 540 aaPredicted RBP15.99■□□□□ 0.15
HDAC1-210ENST00000490081 MRPL50Q8N5N7 158 aaKnown RBP15.99■□□□□ 0.15
HDAC1-210ENST00000490081 SGIP1Q9BQI5 828 aa15.99■□□□□ 0.15
HDAC1-210ENST00000490081 ZBTB7AO95365 584 aa15.98■□□□□ 0.15
HDAC1-210ENST00000490081 MYL6BP14649 208 aa15.98■□□□□ 0.15
HDAC1-210ENST00000490081 RFC4P35249 363 aa15.98■□□□□ 0.15
HDAC1-210ENST00000490081 COL24A1Q17RW2 1714 aa15.98■□□□□ 0.15
HDAC1-210ENST00000490081 COPS6Q7L5N1 327 aa15.98■□□□□ 0.15
HDAC1-210ENST00000490081 SSH1Q8WYL5 1049 aa15.98■□□□□ 0.15
HDAC1-210ENST00000490081 NECTIN2Q92692 538 aa15.98■□□□□ 0.15
HDAC1-210ENST00000490081 PPP1R1BQ9UD71 204 aaPredicted RBP15.98■□□□□ 0.15
HDAC1-210ENST00000490081 USP42Q9H9J4 1324 aaKnown RBP15.97■□□□□ 0.15
HDAC1-210ENST00000490081 DZIP3Q86Y13 1208 aaKnown RBP15.97■□□□□ 0.15
HDAC1-210ENST00000490081 POTEDQ86YR6 584 aa15.97■□□□□ 0.15
HDAC1-210ENST00000490081 PLBD2Q8NHP8 589 aa15.97■□□□□ 0.15
HDAC1-210ENST00000490081 ARHGAP45Q92619 1136 aa15.97■□□□□ 0.15
HDAC1-210ENST00000490081 MAP3K15Q6ZN16 1313 aa15.96■□□□□ 0.15
HDAC1-210ENST00000490081 BCORQ6W2J9 1755 aa15.96■□□□□ 0.15
HDAC1-210ENST00000490081 ZPR1O75312 459 aa15.96■□□□□ 0.15
HDAC1-210ENST00000490081 CAMTA2O94983 1202 aa15.96■□□□□ 0.15
HDAC1-210ENST00000490081 DDX58O95786 925 aaKnown RBP15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 103.6 ms