RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 LTBP4Q8N2S1 1624 aa16.02■□□□□ 0.16
USP40-214ENST00000483519 EPB41L2O43491 1005 aaKnown RBP16.02■□□□□ 0.16
USP40-214ENST00000483519 NME9Q86XW9 330 aa16.02■□□□□ 0.16
USP40-214ENST00000483519 ITSN1Q15811 1721 aa16.02■□□□□ 0.15
USP40-214ENST00000483519 MX1P20591 662 aa16.02■□□□□ 0.15
USP40-214ENST00000483519 CHMLP26374 656 aa16.02■□□□□ 0.15
USP40-214ENST00000483519 LRRCC1Q9C099 1032 aa16.02■□□□□ 0.15
USP40-214ENST00000483519 PRDM10Q9NQV6 1147 aa16.02■□□□□ 0.15
USP40-214ENST00000483519 SALL3Q9BXA9 1300 aa16.01■□□□□ 0.15
USP40-214ENST00000483519 FOXD4L6Q3SYB3 417 aaPredicted RBP16.01■□□□□ 0.15
USP40-214ENST00000483519 FOXD4L3Q6VB84 417 aaPredicted RBP16.01■□□□□ 0.15
USP40-214ENST00000483519 NRKQ7Z2Y5 1582 aa16.01■□□□□ 0.15
USP40-214ENST00000483519 IGSF3O75054 1194 aa16.01■□□□□ 0.15
USP40-214ENST00000483519 ZNF710Q8N1W2 664 aa16.01■□□□□ 0.15
USP40-214ENST00000483519 ZNF830Q96NB3 372 aaPredicted RBP16.01■□□□□ 0.15
USP40-214ENST00000483519 TRIM6-TRIM34B2RNG4 842 aa16■□□□□ 0.15
USP40-214ENST00000483519 GNAI2P04899 355 aa16■□□□□ 0.15
USP40-214ENST00000483519 SLC4A2P04920 1241 aa16■□□□□ 0.15
USP40-214ENST00000483519 TTC12Q9H892 705 aaPredicted RBP16■□□□□ 0.15
USP40-214ENST00000483519 STRCP1A6NGW2 1772 aa16■□□□□ 0.15
USP40-214ENST00000483519 USP54Q70EL1 1684 aa16■□□□□ 0.15
USP40-214ENST00000483519 ZBTB7CA1YPR0 619 aa16■□□□□ 0.15
USP40-214ENST00000483519 RILPL2Q969X0 211 aa16■□□□□ 0.15
USP40-214ENST00000483519 SRCIN1Q9C0H9 1055 aa16■□□□□ 0.15
USP40-214ENST00000483519 TPM3P06753 285 aa15.99■□□□□ 0.15
USP40-214ENST00000483519 UBE2HP62256 183 aa15.99■□□□□ 0.15
USP40-214ENST00000483519 RRS1Q15050 365 aaKnown RBP15.99■□□□□ 0.15
USP40-214ENST00000483519 UPF3BQ9BZI7 483 aaKnown RBP15.99■□□□□ 0.15
USP40-214ENST00000483519 EXOC6BQ9Y2D4 811 aa15.99■□□□□ 0.15
USP40-214ENST00000483519 RPAP1Q9BWH6 1393 aaPredicted RBP15.99■□□□□ 0.15
USP40-214ENST00000483519 HCLS1P14317 486 aaPredicted RBP15.99■□□□□ 0.15
USP40-214ENST00000483519 CHAF1AQ13111 956 aaPredicted RBP15.99■□□□□ 0.15
USP40-214ENST00000483519 KDM4AO75164 1064 aa15.98■□□□□ 0.15
USP40-214ENST00000483519 ZSCAN20P17040 1043 aaPredicted RBP15.98■□□□□ 0.15
USP40-214ENST00000483519 FGD1P98174 961 aa15.98■□□□□ 0.15
USP40-214ENST00000483519 TSHZ3Q63HK5 1081 aa15.98■□□□□ 0.15
USP40-214ENST00000483519 SLC4A10Q6U841 1118 aa15.98■□□□□ 0.15
USP40-214ENST00000483519 DIAPH3Q9NSV4 1193 aa15.98■□□□□ 0.15
USP40-214ENST00000483519 MPNDQ8N594 471 aa15.98■□□□□ 0.15
USP40-214ENST00000483519 ATP6V1DQ9Y5K8 247 aa15.98■□□□□ 0.15
USP40-214ENST00000483519 GTPBP4Q9BZE4 634 aaKnown RBP15.97■□□□□ 0.15
USP40-214ENST00000483519 TMEM94Q12767 1356 aa15.97■□□□□ 0.15
USP40-214ENST00000483519 ROBO2Q9HCK4 1378 aa15.97■□□□□ 0.15
USP40-214ENST00000483519 ZRANB1Q9UGI0 708 aa15.97■□□□□ 0.15
USP40-214ENST00000483519 STAP2Q9UGK3 403 aa15.97■□□□□ 0.15
USP40-214ENST00000483519 AOX1Q06278 1338 aa15.97■□□□□ 0.15
USP40-214ENST00000483519 ZSCAN22P10073 491 aaPredicted RBP15.96■□□□□ 0.15
USP40-214ENST00000483519 MCM10Q7L590 875 aa15.96■□□□□ 0.15
USP40-214ENST00000483519 CERKQ8TCT0 537 aa15.96■□□□□ 0.15
USP40-214ENST00000483519 CNPY2Q9Y2B0 182 aa15.96■□□□□ 0.15
USP40-214ENST00000483519 TCHHQ07283 1943 aa15.96■□□□□ 0.15
USP40-214ENST00000483519 HSPA4P34932 840 aa15.96■□□□□ 0.15
USP40-214ENST00000483519 PPP4R3BQ5MIZ7 849 aa15.96■□□□□ 0.15
USP40-214ENST00000483519 SULT6B1Q6IMI4 303 aa15.96■□□□□ 0.15
USP40-214ENST00000483519 WAPLQ7Z5K2 1190 aa15.96■□□□□ 0.15
USP40-214ENST00000483519 TSC1Q92574 1164 aa15.96■□□□□ 0.15
USP40-214ENST00000483519 ZHX1Q9UKY1 873 aaPredicted RBP15.96■□□□□ 0.15
USP40-214ENST00000483519 ARHGEF10O15013 1369 aa15.96■□□□□ 0.15
USP40-214ENST00000483519 GNAI3P08754 354 aa15.96■□□□□ 0.14
USP40-214ENST00000483519 C17orf53Q8N3J3 647 aaPredicted RBP15.95■□□□□ 0.14
USP40-214ENST00000483519 JARID2Q92833 1246 aaPredicted RBP15.95■□□□□ 0.14
USP40-214ENST00000483519 BCL2L12Q9HB09 334 aa15.95■□□□□ 0.14
USP40-214ENST00000483519 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.95■□□□□ 0.14
USP40-214ENST00000483519 NALCNQ8IZF0 1738 aa15.95■□□□□ 0.14
USP40-214ENST00000483519 GOLGA6L6A8MZA4 724 aa15.95■□□□□ 0.14
USP40-214ENST00000483519 AEBP1Q8IUX7 1158 aa15.95■□□□□ 0.14
USP40-214ENST00000483519 F6X3S4 739 aa15.94■□□□□ 0.14
USP40-214ENST00000483519 WASLO00401 505 aaPredicted RBP15.94■□□□□ 0.14
USP40-214ENST00000483519 CBX1P83916 185 aa15.94■□□□□ 0.14
USP40-214ENST00000483519 CRB1P82279 1406 aa15.94■□□□□ 0.14
USP40-214ENST00000483519 STX6O43752 255 aa15.94■□□□□ 0.14
USP40-214ENST00000483519 PDCL2Q8N4E4 241 aa15.94■□□□□ 0.14
USP40-214ENST00000483519 KIAA1524Q8TCG1 905 aa15.94■□□□□ 0.14
USP40-214ENST00000483519 C19orf44Q9H6X5 657 aa15.94■□□□□ 0.14
USP40-214ENST00000483519 EIF4A2Q14240 407 aaKnown RBP15.93■□□□□ 0.14
USP40-214ENST00000483519 FUCA2Q9BTY2 467 aa15.93■□□□□ 0.14
USP40-214ENST00000483519 ANKARQ7Z5J8 1434 aa15.93■□□□□ 0.14
USP40-214ENST00000483519 KIF20AO95235 890 aa15.92■□□□□ 0.14
USP40-214ENST00000483519 F13A1P00488 732 aa15.92■□□□□ 0.14
USP40-214ENST00000483519 ATP8B2P98198 1209 aa15.92■□□□□ 0.14
USP40-214ENST00000483519 G2E3Q7L622 706 aa15.92■□□□□ 0.14
USP40-214ENST00000483519 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.92■□□□□ 0.14
USP40-214ENST00000483519 STK31Q9BXU1 1019 aa15.92■□□□□ 0.14
USP40-214ENST00000483519 ADGRL3Q9HAR2 1447 aa15.92■□□□□ 0.14
USP40-214ENST00000483519 RAD50Q92878 1312 aa15.92■□□□□ 0.14
USP40-214ENST00000483519 FIBPO43427 364 aa15.91■□□□□ 0.14
USP40-214ENST00000483519 SMC3Q9UQE7 1217 aa15.91■□□□□ 0.14
USP40-214ENST00000483519 SYT1P21579 422 aa15.91■□□□□ 0.14
USP40-214ENST00000483519 TSPYL4Q9UJ04 414 aa15.91■□□□□ 0.14
USP40-214ENST00000483519 LIMCH1Q9UPQ0 1083 aa15.91■□□□□ 0.14
USP40-214ENST00000483519 DCCP43146 1447 aa15.9■□□□□ 0.14
USP40-214ENST00000483519 PNMA6EA0A0J9YXQ4 647 aa15.9■□□□□ 0.14
USP40-214ENST00000483519 UNC5CLQ8IV45 518 aa15.9■□□□□ 0.14
USP40-214ENST00000483519 ATF3P18847 181 aa15.9■□□□□ 0.14
USP40-214ENST00000483519 ATP2B3Q16720 1220 aa15.9■□□□□ 0.14
USP40-214ENST00000483519 GIMAP6Q6P9H5 292 aa15.9■□□□□ 0.14
USP40-214ENST00000483519 CADPS2Q86UW7 1296 aa15.9■□□□□ 0.14
USP40-214ENST00000483519 NUDT16Q96DE0 195 aaKnown RBP15.9■□□□□ 0.14
USP40-214ENST00000483519 TTC14Q96N46 770 aa15.9■□□□□ 0.14
USP40-214ENST00000483519 RIOK3O14730 519 aaKnown RBP15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms