RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525		A0A087WZG4	1122 aa		6.63	□□□□□ -1.35
HDAC6-223	ENST00000480525	EIF5	P55010	431 aa	Known RBP	6.63	□□□□□ -1.35
HDAC6-223	ENST00000480525	RIC1	Q4ADV7	1423 aa		6.63	□□□□□ -1.35
HDAC6-223	ENST00000480525	CLEC4G	Q6UXB4	293 aa		6.63	□□□□□ -1.35
HDAC6-223	ENST00000480525	N4BP2	Q86UW6	1770 aa	Predicted RBP	6.63	□□□□□ -1.35
HDAC6-223	ENST00000480525	LINC00116	Q8NCU8	138 aa		6.63	□□□□□ -1.35
HDAC6-223	ENST00000480525	AK7	Q96M32	723 aa		6.63	□□□□□ -1.35
HDAC6-223	ENST00000480525	SGIP1	Q9BQI5	828 aa		6.63	□□□□□ -1.35
HDAC6-223	ENST00000480525	RTCB	Q9Y3I0	505 aa	Known RBP	6.63	□□□□□ -1.35
HDAC6-223	ENST00000480525	BRCA1	P38398	1863 aa	Known RBP	6.62	□□□□□ -1.35
HDAC6-223	ENST00000480525	DLEC1	Q9Y238	1755 aa		6.62	□□□□□ -1.35
HDAC6-223	ENST00000480525	COL15A1	P39059	1388 aa		6.62	□□□□□ -1.35
HDAC6-223	ENST00000480525	RNF123	Q5XPI4	1314 aa		6.62	□□□□□ -1.35
HDAC6-223	ENST00000480525	USP42	Q9H9J4	1324 aa	Known RBP	6.62	□□□□□ -1.35
HDAC6-223	ENST00000480525	CRKL	P46109	303 aa	Known RBP	6.62	□□□□□ -1.35
HDAC6-223	ENST00000480525	CNGB1	Q14028	1251 aa	Predicted RBP	6.62	□□□□□ -1.35
HDAC6-223	ENST00000480525	ZNF827	Q17R98	1081 aa		6.62	□□□□□ -1.35
HDAC6-223	ENST00000480525	INTS5	Q6P9B9	1019 aa	Known RBP	6.62	□□□□□ -1.35
HDAC6-223	ENST00000480525	NLGN1	Q8N2Q7	840 aa		6.62	□□□□□ -1.35
HDAC6-223	ENST00000480525	MYH16	Q9H6N6	1097 aa		6.62	□□□□□ -1.35
HDAC6-223	ENST00000480525	TFCP2L1	Q9NZI6	479 aa		6.62	□□□□□ -1.35
HDAC6-223	ENST00000480525	TSPYL4	Q9UJ04	414 aa		6.62	□□□□□ -1.35
HDAC6-223	ENST00000480525	AFDN	P55196	1824 aa	Known RBP	6.62	□□□□□ -1.35
HDAC6-223	ENST00000480525	SRCAP	Q6ZRS2	3230 aa		6.61	□□□□□ -1.35
HDAC6-223	ENST00000480525	ATP10D	Q9P241	1426 aa		6.61	□□□□□ -1.35
HDAC6-223	ENST00000480525	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	6.61	□□□□□ -1.35
HDAC6-223	ENST00000480525	ERVV-1	B6SEH8	477 aa		6.61	□□□□□ -1.35
HDAC6-223	ENST00000480525		E9PSI1	815 aa		6.61	□□□□□ -1.35
HDAC6-223	ENST00000480525	PTCD1	O75127	700 aa	Known RBP	6.61	□□□□□ -1.35
HDAC6-223	ENST00000480525	TRAPPC3L	Q5T215	181 aa		6.61	□□□□□ -1.35
HDAC6-223	ENST00000480525	DNAJC10	Q8IXB1	793 aa		6.61	□□□□□ -1.35
HDAC6-223	ENST00000480525	CCDC146	Q8IYE0	955 aa		6.61	□□□□□ -1.35
HDAC6-223	ENST00000480525	TRMT2A	Q8IZ69	625 aa	Known RBP	6.61	□□□□□ -1.35
HDAC6-223	ENST00000480525	RBM42	Q9BTD8	480 aa	Known RBP	6.61	□□□□□ -1.35
HDAC6-223	ENST00000480525	SPON1	Q9HCB6	807 aa		6.61	□□□□□ -1.35
HDAC6-223	ENST00000480525	NARF	Q9UHQ1	456 aa		6.61	□□□□□ -1.35
HDAC6-223	ENST00000480525	PDZRN3	Q9UPQ7	1066 aa		6.61	□□□□□ -1.35
HDAC6-223	ENST00000480525	ARFGEF2	Q9Y6D5	1785 aa		6.61	□□□□□ -1.35
HDAC6-223	ENST00000480525	ARFGEF1	Q9Y6D6	1849 aa		6.6	□□□□□ -1.35
HDAC6-223	ENST00000480525	LAMB2	P55268	1798 aa		6.6	□□□□□ -1.35
HDAC6-223	ENST00000480525	ZBED9	Q6R2W3	1325 aa		6.6	□□□□□ -1.35
HDAC6-223	ENST00000480525	KIAA1551	Q9HCM1	1747 aa		6.6	□□□□□ -1.35
HDAC6-223	ENST00000480525	GNPAT	O15228	680 aa		6.6	□□□□□ -1.35
HDAC6-223	ENST00000480525	BRPF1	P55201	1214 aa	Predicted RBP	6.6	□□□□□ -1.35
HDAC6-223	ENST00000480525	SLC39A6	Q13433	755 aa		6.6	□□□□□ -1.35
HDAC6-223	ENST00000480525	DCTN1	Q14203	1278 aa		6.6	□□□□□ -1.35
HDAC6-223	ENST00000480525	R3HDM1	Q15032	1099 aa	Known RBP	6.6	□□□□□ -1.35
HDAC6-223	ENST00000480525	LRP10	Q7Z4F1	713 aa		6.6	□□□□□ -1.35
HDAC6-223	ENST00000480525	DDX21	Q9NR30	783 aa	Known RBP eCLIP	6.6	□□□□□ -1.35
HDAC6-223	ENST00000480525	MBIP	Q9NS73	344 aa		6.6	□□□□□ -1.35
HDAC6-223	ENST00000480525	DBF4	Q9UBU7	674 aa	Predicted RBP	6.6	□□□□□ -1.35
HDAC6-223	ENST00000480525	PTGER2	P43116	358 aa		6.59	□□□□□ -1.35
HDAC6-223	ENST00000480525	GOLGA2	Q08379	1002 aa		6.59	□□□□□ -1.35
HDAC6-223	ENST00000480525	COL23A1	Q86Y22	540 aa	Predicted RBP	6.59	□□□□□ -1.35
HDAC6-223	ENST00000480525	MIER1	Q8N108	512 aa		6.59	□□□□□ -1.35
HDAC6-223	ENST00000480525	HYPK	Q9NX55	129 aa		6.59	□□□□□ -1.35
HDAC6-223	ENST00000480525	ZNF652	Q9Y2D9	606 aa		6.59	□□□□□ -1.35
HDAC6-223	ENST00000480525	ZBTB1	Q9Y2K1	713 aa		6.59	□□□□□ -1.35
HDAC6-223	ENST00000480525	C10orf71	Q711Q0	1435 aa		6.59	□□□□□ -1.36
HDAC6-223	ENST00000480525	MYH3	P11055	1940 aa		6.58	□□□□□ -1.36
HDAC6-223	ENST00000480525	FANCI	Q9NVI1	1328 aa		6.58	□□□□□ -1.36
HDAC6-223	ENST00000480525	GYS1	P13807	737 aa		6.58	□□□□□ -1.36
HDAC6-223	ENST00000480525	POLD1	P28340	1107 aa		6.58	□□□□□ -1.36
HDAC6-223	ENST00000480525	RFC4	P35249	363 aa		6.58	□□□□□ -1.36
HDAC6-223	ENST00000480525	PDIA6	Q15084	440 aa		6.58	□□□□□ -1.36
HDAC6-223	ENST00000480525	HSP90AB3P	Q58FF7	597 aa		6.58	□□□□□ -1.36
HDAC6-223	ENST00000480525	CCDC30	Q5VVM6	783 aa		6.58	□□□□□ -1.36
HDAC6-223	ENST00000480525	NPM2	Q86SE8	214 aa	Known RBP	6.58	□□□□□ -1.36
HDAC6-223	ENST00000480525	FAM9B	Q8IZU0	186 aa		6.58	□□□□□ -1.36
HDAC6-223	ENST00000480525	ARHGEF1	Q92888	912 aa	Known RBP	6.58	□□□□□ -1.36
HDAC6-223	ENST00000480525	CD2AP	Q9Y5K6	639 aa		6.58	□□□□□ -1.36
HDAC6-223	ENST00000480525	USP16	Q9Y5T5	823 aa		6.58	□□□□□ -1.36
HDAC6-223	ENST00000480525	PXDNL	A1KZ92	1463 aa		6.58	□□□□□ -1.36
HDAC6-223	ENST00000480525	CHD4	Q14839	1912 aa		6.58	□□□□□ -1.36
HDAC6-223	ENST00000480525	CARMIL3	Q8ND23	1372 aa		6.57	□□□□□ -1.36
HDAC6-223	ENST00000480525	MAP3K15	Q6ZN16	1313 aa		6.57	□□□□□ -1.36
HDAC6-223	ENST00000480525	NBPF26	B4DH59	902 aa		6.57	□□□□□ -1.36
HDAC6-223	ENST00000480525	KCNQ3	O43525	872 aa		6.57	□□□□□ -1.36
HDAC6-223	ENST00000480525	ZPR1	O75312	459 aa		6.57	□□□□□ -1.36
HDAC6-223	ENST00000480525	TM4SF1	P30408	202 aa		6.57	□□□□□ -1.36
HDAC6-223	ENST00000480525	SLFN5	Q08AF3	891 aa		6.57	□□□□□ -1.36
HDAC6-223	ENST00000480525	TRIM28	Q13263	835 aa	Known RBP	6.57	□□□□□ -1.36
HDAC6-223	ENST00000480525	NEUROD2	Q15784	382 aa		6.57	□□□□□ -1.36
HDAC6-223	ENST00000480525	ALDH1L2	Q3SY69	923 aa		6.57	□□□□□ -1.36
HDAC6-223	ENST00000480525	NBPF10	Q6P3W6	841 aa	Known RBP	6.57	□□□□□ -1.36
HDAC6-223	ENST00000480525	NBPF15	Q8N660	670 aa		6.57	□□□□□ -1.36
HDAC6-223	ENST00000480525	THUMPD2	Q9BTF0	503 aa	Known RBP	6.57	□□□□□ -1.36
HDAC6-223	ENST00000480525	RRP7A	Q9Y3A4	280 aa	Known RBP	6.57	□□□□□ -1.36
HDAC6-223	ENST00000480525	ANKRD31	Q8N7Z5	1873 aa		6.57	□□□□□ -1.36
HDAC6-223	ENST00000480525	CAMTA2	O94983	1202 aa		6.56	□□□□□ -1.36
HDAC6-223	ENST00000480525	TWISTNB	Q3B726	338 aa	Predicted RBP	6.56	□□□□□ -1.36
HDAC6-223	ENST00000480525	PARP10	Q53GL7	1025 aa		6.56	□□□□□ -1.36
HDAC6-223	ENST00000480525	HDGFL1	Q5TGJ6	251 aa		6.56	□□□□□ -1.36
HDAC6-223	ENST00000480525	DUSP27	Q5VZP5	1158 aa		6.56	□□□□□ -1.36
HDAC6-223	ENST00000480525	GIGYF2	Q6Y7W6	1299 aa	Known RBP	6.56	□□□□□ -1.36
HDAC6-223	ENST00000480525	AMIGO3	Q86WK7	504 aa		6.56	□□□□□ -1.36
HDAC6-223	ENST00000480525	KLRG2	A4D1S0	409 aa	Predicted RBP	6.55	□□□□□ -1.36
HDAC6-223	ENST00000480525	VAMP4	O75379	141 aa		6.55	□□□□□ -1.36
HDAC6-223	ENST00000480525	DDX58	O95786	925 aa	Known RBP	6.55	□□□□□ -1.36
HDAC6-223	ENST00000480525	HSP90B1	P14625	803 aa	Known RBP	6.55	□□□□□ -1.36

Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms