RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 RRAGCQ9HB90 399 aa17.2■□□□□ 0.34
SKA3-206ENST00000475251 CLSPNQ9HAW4 1339 aa17.2■□□□□ 0.34
SKA3-206ENST00000475251 EIF4G2P78344 907 aaKnown RBP eCLIP17.19■□□□□ 0.34
SKA3-206ENST00000475251 INTS5Q6P9B9 1019 aaKnown RBP17.19■□□□□ 0.34
SKA3-206ENST00000475251 USPL1Q5W0Q7 1092 aa17.18■□□□□ 0.34
SKA3-206ENST00000475251 SLC52A2Q9HAB3 445 aa17.18■□□□□ 0.34
SKA3-206ENST00000475251 SBF1O95248 1867 aa17.18■□□□□ 0.34
SKA3-206ENST00000475251 SOS1Q07889 1333 aaPredicted RBP17.18■□□□□ 0.34
SKA3-206ENST00000475251 ADAMTS7Q9UKP4 1686 aa17.17■□□□□ 0.34
SKA3-206ENST00000475251 DNAJC10Q8IXB1 793 aa17.17■□□□□ 0.34
SKA3-206ENST00000475251 LMNB1P20700 586 aa17.16■□□□□ 0.34
SKA3-206ENST00000475251 NARFQ9UHQ1 456 aa17.16■□□□□ 0.34
SKA3-206ENST00000475251 COL15A1P39059 1388 aa17.15■□□□□ 0.34
SKA3-206ENST00000475251 VEGFAP15692 232 aaPredicted RBP17.15■□□□□ 0.34
SKA3-206ENST00000475251 IL13P35225 146 aa17.15■□□□□ 0.34
SKA3-206ENST00000475251 HTRA3P83110 453 aa17.15■□□□□ 0.34
SKA3-206ENST00000475251 KNSTRNQ9Y448 316 aa17.15■□□□□ 0.34
SKA3-206ENST00000475251 MRC1P22897 1456 aa17.15■□□□□ 0.34
SKA3-206ENST00000475251 GLTPD2A6NH11 291 aa17.14■□□□□ 0.33
SKA3-206ENST00000475251 CYP19A1P11511 503 aaPredicted RBP17.14■□□□□ 0.33
SKA3-206ENST00000475251 NFIXQ14938 502 aa17.14■□□□□ 0.33
SKA3-206ENST00000475251 VSIG10Q8N0Z9 540 aa17.14■□□□□ 0.33
SKA3-206ENST00000475251 TTLL6Q8N841 843 aa17.14■□□□□ 0.33
SKA3-206ENST00000475251 NRXN2Q9P2S2 1712 aa17.13■□□□□ 0.33
SKA3-206ENST00000475251 DLEC1Q9Y238 1755 aa17.13■□□□□ 0.33
SKA3-206ENST00000475251 RASSF7Q02833 373 aa17.13■□□□□ 0.33
SKA3-206ENST00000475251 AFDNP55196 1824 aaKnown RBP17.12■□□□□ 0.33
SKA3-206ENST00000475251 H0YIN7 160 aa17.12■□□□□ 0.33
SKA3-206ENST00000475251 SERPINB2P05120 415 aa17.12■□□□□ 0.33
SKA3-206ENST00000475251 HSPA5P11021 654 aaKnown RBP17.12■□□□□ 0.33
SKA3-206ENST00000475251 COL13A1Q5TAT6 717 aaPredicted RBP17.12■□□□□ 0.33
SKA3-206ENST00000475251 RNMTO43148 476 aaKnown RBP17.11■□□□□ 0.33
SKA3-206ENST00000475251 PDZRN3Q9UPQ7 1066 aa17.11■□□□□ 0.33
SKA3-206ENST00000475251 ZBTB1Q9Y2K1 713 aa17.11■□□□□ 0.33
SKA3-206ENST00000475251 A0A087WZG4 1122 aa17.1■□□□□ 0.33
SKA3-206ENST00000475251 SLC39A6Q13433 755 aa17.1■□□□□ 0.33
SKA3-206ENST00000475251 DPY19L2Q6NUT2 758 aa17.1■□□□□ 0.33
SKA3-206ENST00000475251 C2CD5Q86YS7 1000 aa17.1■□□□□ 0.33
SKA3-206ENST00000475251 TNS4Q8IZW8 715 aa17.1■□□□□ 0.33
SKA3-206ENST00000475251 LGR6Q9HBX8 967 aa17.1■□□□□ 0.33
SKA3-206ENST00000475251 TIAM2Q8IVF5 1701 aa17.1■□□□□ 0.33
SKA3-206ENST00000475251 STARD3NLO95772 234 aa17.09■□□□□ 0.33
SKA3-206ENST00000475251 CACNB1Q02641 598 aaPredicted RBP17.09■□□□□ 0.33
SKA3-206ENST00000475251 TTC5Q8N0Z6 440 aa17.09■□□□□ 0.33
SKA3-206ENST00000475251 VIRMAQ69YN4 1812 aaKnown RBP17.08■□□□□ 0.33
SKA3-206ENST00000475251 PDE6BP35913 854 aa17.07■□□□□ 0.32
SKA3-206ENST00000475251 BCL2L12Q9HB09 334 aa17.07■□□□□ 0.32
SKA3-206ENST00000475251 HMOX1P09601 288 aa17.06■□□□□ 0.32
SKA3-206ENST00000475251 CANXP27824 592 aaKnown RBP17.06■□□□□ 0.32
SKA3-206ENST00000475251 TEX13AQ9BXU3 409 aaPredicted RBP17.06■□□□□ 0.32
SKA3-206ENST00000475251 UBR2Q8IWV8 1755 aa17.05■□□□□ 0.32
SKA3-206ENST00000475251 NFKBIEO00221 500 aa17.05■□□□□ 0.32
SKA3-206ENST00000475251 EIF5P55010 431 aaKnown RBP17.05■□□□□ 0.32
SKA3-206ENST00000475251 MTHFSDQ2M296 383 aaKnown RBP17.05■□□□□ 0.32
SKA3-206ENST00000475251 BICDL1Q6ZP65 573 aa17.05■□□□□ 0.32
SKA3-206ENST00000475251 NPM2Q86SE8 214 aaKnown RBP17.05■□□□□ 0.32
SKA3-206ENST00000475251 BRIP1Q9BX63 1249 aa17.05■□□□□ 0.32
SKA3-206ENST00000475251 CCDC88AQ3V6T2 1871 aa17.04■□□□□ 0.32
SKA3-206ENST00000475251 DIAPH1O60610 1272 aaKnown RBP17.04■□□□□ 0.32
SKA3-206ENST00000475251 CAPN15O75808 1086 aa17.04■□□□□ 0.32
SKA3-206ENST00000475251 HSPA1AP0DMV8 641 aaKnown RBP17.04■□□□□ 0.32
SKA3-206ENST00000475251 HSPA1BP0DMV9 641 aaKnown RBP17.04■□□□□ 0.32
SKA3-206ENST00000475251 PRELPP51888 382 aa17.04■□□□□ 0.32
SKA3-206ENST00000475251 AMER1Q5JTC6 1135 aaPredicted RBP17.04■□□□□ 0.32
SKA3-206ENST00000475251 ZNF622Q969S3 477 aaKnown RBP eCLIP17.04■□□□□ 0.32
SKA3-206ENST00000475251 CARMIL3Q8ND23 1372 aa17.03■□□□□ 0.32
SKA3-206ENST00000475251 ERFEQ4G0M1 354 aa17.03■□□□□ 0.32
SKA3-206ENST00000475251 PCGF6Q9BYE7 350 aa17.03■□□□□ 0.32
SKA3-206ENST00000475251 SCN7AQ01118 1682 aa17.02■□□□□ 0.32
SKA3-206ENST00000475251 NPHP1O15259 732 aa17.02■□□□□ 0.32
SKA3-206ENST00000475251 TEFQ10587 303 aa17.02■□□□□ 0.32
SKA3-206ENST00000475251 SOGA3Q5TF21 947 aa17.02■□□□□ 0.32
SKA3-206ENST00000475251 LTBP3Q9NS15 1303 aa17.01■□□□□ 0.31
SKA3-206ENST00000475251 IL6STP40189 918 aaPredicted RBP17.01■□□□□ 0.31
SKA3-206ENST00000475251 TBC1D9BQ66K14 1250 aa17.01■□□□□ 0.31
SKA3-206ENST00000475251 CNKSR1Q969H4 720 aa17.01■□□□□ 0.31
SKA3-206ENST00000475251 TAOK3Q9H2K8 898 aa17.01■□□□□ 0.31
SKA3-206ENST00000475251 DICER1Q9UPY3 1922 aaKnown RBP17.01■□□□□ 0.31
SKA3-206ENST00000475251 HEG1Q9ULI3 1381 aa17.01■□□□□ 0.31
SKA3-206ENST00000475251 C21orf2O43822 256 aa17■□□□□ 0.31
SKA3-206ENST00000475251 PRR5LQ6MZQ0 368 aa17■□□□□ 0.31
SKA3-206ENST00000475251 ZNF790Q6PG37 636 aa17■□□□□ 0.31
SKA3-206ENST00000475251 GAS2L2Q8NHY3 880 aa17■□□□□ 0.31
SKA3-206ENST00000475251 ZNF330Q9Y3S2 320 aaPredicted RBP17■□□□□ 0.31
SKA3-206ENST00000475251 FER1L6Q2WGJ9 1857 aa16.99■□□□□ 0.31
SKA3-206ENST00000475251 ANKRD31Q8N7Z5 1873 aa16.99■□□□□ 0.31
SKA3-206ENST00000475251 POTECB2RU33 542 aa16.99■□□□□ 0.31
SKA3-206ENST00000475251 ST5P78524 1137 aa16.99■□□□□ 0.31
SKA3-206ENST00000475251 CHADLQ6NUI6 762 aa16.99■□□□□ 0.31
SKA3-206ENST00000475251 CNBD1Q8NA66 436 aa16.99■□□□□ 0.31
SKA3-206ENST00000475251 ZNF496Q96IT1 587 aaPredicted RBP16.99■□□□□ 0.31
SKA3-206ENST00000475251 SETDB2Q96T68 719 aa16.99■□□□□ 0.31
SKA3-206ENST00000475251 CREBZFQ9NS37 354 aa16.99■□□□□ 0.31
SKA3-206ENST00000475251 GNAT3A8MTJ3 354 aa16.98■□□□□ 0.31
SKA3-206ENST00000475251 C1QBPQ07021 282 aaKnown RBP16.98■□□□□ 0.31
SKA3-206ENST00000475251 STYK1Q6J9G0 422 aa16.98■□□□□ 0.31
SKA3-206ENST00000475251 FMNL2Q96PY5 1086 aa16.98■□□□□ 0.31
SKA3-206ENST00000475251 TBC1D2BQ9UPU7 963 aa16.98■□□□□ 0.31
SKA3-206ENST00000475251 PCNTO95613 3336 aa16.97■□□□□ 0.31
SKA3-206ENST00000475251 IQCA1LA6NCM1 817 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms