RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 BNIP3LO60238 219 aa6.98□□□□□ -1.29
SCN1A-205ENST00000473295 ATP4AP20648 1035 aa6.98□□□□□ -1.29
SCN1A-205ENST00000473295 ARSJQ5FYB0 599 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-205ENST00000473295 HDGFL1Q5TGJ6 251 aa6.98□□□□□ -1.29
SCN1A-205ENST00000473295 ABHD17AQ96GS6 310 aa6.98□□□□□ -1.29
SCN1A-205ENST00000473295 GJA3Q9Y6H8 435 aa6.98□□□□□ -1.29
SCN1A-205ENST00000473295 POM121CA8CG34 1229 aa6.97□□□□□ -1.29
SCN1A-205ENST00000473295 ATXN7O15265 892 aaPredicted RBP6.97□□□□□ -1.29
SCN1A-205ENST00000473295 ATP9BO43861 1147 aa6.97□□□□□ -1.29
SCN1A-205ENST00000473295 ZNF295-AS1Q8N0V1 137 aa6.97□□□□□ -1.29
SCN1A-205ENST00000473295 KCTD17Q8N5Z5 321 aa6.97□□□□□ -1.29
SCN1A-205ENST00000473295 ZCCHC2Q9C0B9 1178 aaKnown RBP6.97□□□□□ -1.29
SCN1A-205ENST00000473295 DNAAF2Q9NVR5 837 aaKnown RBP6.97□□□□□ -1.29
SCN1A-205ENST00000473295 ZNF358Q9NW07 568 aa6.97□□□□□ -1.29
SCN1A-205ENST00000473295 SCHIP1Q9P0W5 487 aaPredicted RBP6.97□□□□□ -1.29
SCN1A-205ENST00000473295 A0A1W2PNR3 127 aa6.96□□□□□ -1.3
SCN1A-205ENST00000473295 USP17L3A6NCW0 530 aa6.96□□□□□ -1.3
SCN1A-205ENST00000473295 USP17L4A6NCW7 530 aa6.96□□□□□ -1.3
SCN1A-205ENST00000473295 IGHA1P01876 353 aa6.96□□□□□ -1.3
SCN1A-205ENST00000473295 TEAD4Q15561 434 aa6.96□□□□□ -1.3
SCN1A-205ENST00000473295 USP17L2Q6R6M4 530 aa6.96□□□□□ -1.3
SCN1A-205ENST00000473295 USP17L1Q7RTZ2 530 aa6.96□□□□□ -1.3
SCN1A-205ENST00000473295 DEPDC4Q8N2C3 294 aa6.96□□□□□ -1.3
SCN1A-205ENST00000473295 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.96□□□□□ -1.3
SCN1A-205ENST00000473295 GALNT6Q8NCL4 622 aa6.96□□□□□ -1.3
SCN1A-205ENST00000473295 CHMP3Q9Y3E7 222 aa6.96□□□□□ -1.3
SCN1A-205ENST00000473295 RBM19Q9Y4C8 960 aaKnown RBP6.96□□□□□ -1.3
SCN1A-205ENST00000473295 GPC6Q9Y625 555 aaPredicted RBP6.96□□□□□ -1.3
SCN1A-205ENST00000473295 PIK3R2O00459 728 aa6.95□□□□□ -1.3
SCN1A-205ENST00000473295 ARAFP10398 606 aa6.95□□□□□ -1.3
SCN1A-205ENST00000473295 FAM182BQ5T319 152 aa6.95□□□□□ -1.3
SCN1A-205ENST00000473295 SAMD5Q5TGI4 173 aa6.95□□□□□ -1.3
SCN1A-205ENST00000473295 BICDL1Q6ZP65 573 aa6.95□□□□□ -1.3
SCN1A-205ENST00000473295 SLCO4C1Q6ZQN7 724 aa6.95□□□□□ -1.3
SCN1A-205ENST00000473295 PROSER2Q86WR7 435 aaPredicted RBP6.95□□□□□ -1.3
SCN1A-205ENST00000473295 ADAMTS19Q8TE59 1207 aa6.95□□□□□ -1.3
SCN1A-205ENST00000473295 EDARADDQ8WWZ3 215 aa6.95□□□□□ -1.3
SCN1A-205ENST00000473295 AVENQ9NQS1 362 aaPredicted RBP6.95□□□□□ -1.3
SCN1A-205ENST00000473295 PALM3A6NDB9 673 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-205ENST00000473295 M0R2N6 131 aa6.94□□□□□ -1.3
SCN1A-205ENST00000473295 FAM157BP0CG42 384 aa6.94□□□□□ -1.3
SCN1A-205ENST00000473295 NOS2P35228 1153 aa6.94□□□□□ -1.3
SCN1A-205ENST00000473295 LAMC2Q13753 1193 aa6.94□□□□□ -1.3
SCN1A-205ENST00000473295 CCDC102BQ68D86 513 aa6.94□□□□□ -1.3
SCN1A-205ENST00000473295 LARGE2Q8N3Y3 721 aa6.94□□□□□ -1.3
SCN1A-205ENST00000473295 TPCN2Q8NHX9 752 aa6.94□□□□□ -1.3
SCN1A-205ENST00000473295 UCN2Q96RP3 112 aa6.94□□□□□ -1.3
SCN1A-205ENST00000473295 ZIC5Q96T25 663 aa6.94□□□□□ -1.3
SCN1A-205ENST00000473295 MKL2Q9ULH7 1088 aa6.94□□□□□ -1.3
SCN1A-205ENST00000473295 USP3Q9Y6I4 520 aa6.94□□□□□ -1.3
SCN1A-205ENST00000473295 CNTNAP5Q8WYK1 1306 aa6.94□□□□□ -1.3
SCN1A-205ENST00000473295 MAPTP10636 758 aaKnown RBP6.93□□□□□ -1.3
SCN1A-205ENST00000473295 EPHA4P54764 986 aa6.93□□□□□ -1.3
SCN1A-205ENST00000473295 CTBSQ01459 385 aa6.93□□□□□ -1.3
SCN1A-205ENST00000473295 TNP2Q05952 138 aa6.93□□□□□ -1.3
SCN1A-205ENST00000473295 ALYREFQ86V81 257 aaKnown RBP6.93□□□□□ -1.3
SCN1A-205ENST00000473295 SLC9A9Q8IVB4 645 aa6.93□□□□□ -1.3
SCN1A-205ENST00000473295 OGFOD1Q8N543 542 aa6.93□□□□□ -1.3
SCN1A-205ENST00000473295 L3MBTL2Q969R5 705 aa6.93□□□□□ -1.3
SCN1A-205ENST00000473295 MKRN1Q9UHC7 482 aaKnown RBP6.93□□□□□ -1.3
SCN1A-205ENST00000473295 SERTM1A2A2V5 107 aa6.92□□□□□ -1.3
SCN1A-205ENST00000473295 DCDC2BA2VCK2 349 aa6.92□□□□□ -1.3
SCN1A-205ENST00000473295 C2CD2LO14523 706 aa6.92□□□□□ -1.3
SCN1A-205ENST00000473295 KHNYNO15037 678 aaKnown RBP6.92□□□□□ -1.3
SCN1A-205ENST00000473295 ZBTB7BO15156 539 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-205ENST00000473295 PSMA6P60900 246 aaKnown RBP6.92□□□□□ -1.3
SCN1A-205ENST00000473295 SIX5Q8N196 739 aa6.92□□□□□ -1.3
SCN1A-205ENST00000473295 FNBP4Q8N3X1 1017 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-205ENST00000473295 GLMNQ92990 594 aa6.92□□□□□ -1.3
SCN1A-205ENST00000473295 CLUAP1Q96AJ1 413 aa6.92□□□□□ -1.3
SCN1A-205ENST00000473295 NEUROD4Q9HD90 331 aa6.92□□□□□ -1.3
SCN1A-205ENST00000473295 GGA1Q9UJY5 639 aa6.92□□□□□ -1.3
SCN1A-205ENST00000473295 ZNF232Q9UNY5 417 aa6.92□□□□□ -1.3
SCN1A-205ENST00000473295 A6NJR5 290 aa6.91□□□□□ -1.3
SCN1A-205ENST00000473295 SHISA8B8ZZ34 492 aa6.91□□□□□ -1.3
SCN1A-205ENST00000473295 EML1O00423 815 aa6.91□□□□□ -1.3
SCN1A-205ENST00000473295 AMPD1P23109 780 aa6.91□□□□□ -1.3
SCN1A-205ENST00000473295 ADH6P28332 368 aa6.91□□□□□ -1.3
SCN1A-205ENST00000473295 CLDN10P78369 228 aa6.91□□□□□ -1.3
SCN1A-205ENST00000473295 TNS4Q8IZW8 715 aa6.91□□□□□ -1.3
SCN1A-205ENST00000473295 ZDHHC1Q8WTX9 485 aa6.91□□□□□ -1.3
SCN1A-205ENST00000473295 MARK1Q9P0L2 795 aa6.91□□□□□ -1.3
SCN1A-205ENST00000473295 EPXP11678 715 aa6.9□□□□□ -1.3
SCN1A-205ENST00000473295 TXLNAP40222 546 aa6.9□□□□□ -1.3
SCN1A-205ENST00000473295 DCAF5Q96JK2 942 aa6.9□□□□□ -1.3
SCN1A-205ENST00000473295 RRAGCQ9HB90 399 aa6.9□□□□□ -1.3
SCN1A-205ENST00000473295 KIAA1024Q9UPX6 916 aa6.9□□□□□ -1.3
SCN1A-205ENST00000473295 PARP3Q9Y6F1 533 aa6.9□□□□□ -1.3
SCN1A-205ENST00000473295 NEURL1BA8MQ27 555 aa6.89□□□□□ -1.31
SCN1A-205ENST00000473295 HIRAP54198 1017 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-205ENST00000473295 C1orf53Q5VUE5 145 aa6.89□□□□□ -1.31
SCN1A-205ENST00000473295 GPAT2Q6NUI2 795 aa6.89□□□□□ -1.31
SCN1A-205ENST00000473295 C1orf229Q6ZS94 237 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-205ENST00000473295 GAS2L2Q8NHY3 880 aa6.89□□□□□ -1.31
SCN1A-205ENST00000473295 CALR3Q96L12 384 aaKnown RBP6.89□□□□□ -1.31
SCN1A-205ENST00000473295 ANKIB1Q9P2G1 1089 aa6.89□□□□□ -1.31
SCN1A-205ENST00000473295 PRR12Q9ULL5 1215 aa6.89□□□□□ -1.31
SCN1A-205ENST00000473295 EFSO43281 561 aa6.88□□□□□ -1.31
SCN1A-205ENST00000473295 CD33P20138 364 aa6.88□□□□□ -1.31
SCN1A-205ENST00000473295 HIF1AQ16665 826 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms