RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 MED23Q9ULK4 1368 aa6.48□□□□□ -1.37
SYNE1-220ENST00000471834 ZRANB2O95218 330 aaKnown RBP eCLIP6.48□□□□□ -1.37
SYNE1-220ENST00000471834 IDI1Q13907 227 aa6.48□□□□□ -1.37
SYNE1-220ENST00000471834 CCDC93Q567U6 631 aa6.48□□□□□ -1.37
SYNE1-220ENST00000471834 ESYT1Q9BSJ8 1104 aa6.48□□□□□ -1.37
SYNE1-220ENST00000471834 FECHP22830 423 aa6.48□□□□□ -1.37
SYNE1-220ENST00000471834 ATP2B3Q16720 1220 aa6.48□□□□□ -1.37
SYNE1-220ENST00000471834 DDX49Q9Y6V7 483 aaKnown RBP6.48□□□□□ -1.37
SYNE1-220ENST00000471834 TTC21BQ7Z4L5 1316 aa6.48□□□□□ -1.37
SYNE1-220ENST00000471834 NOLC1Q14978 699 aaKnown RBP eCLIP6.48□□□□□ -1.37
SYNE1-220ENST00000471834 ATG3Q9NT62 314 aa6.48□□□□□ -1.37
SYNE1-220ENST00000471834 EMILIN1Q9Y6C2 1016 aa6.48□□□□□ -1.37
SYNE1-220ENST00000471834 CARMIL3Q8ND23 1372 aa6.48□□□□□ -1.37
SYNE1-220ENST00000471834 KIF3BO15066 747 aa6.48□□□□□ -1.37
SYNE1-220ENST00000471834 CHMLP26374 656 aa6.48□□□□□ -1.37
SYNE1-220ENST00000471834 SOX12O15370 315 aa6.47□□□□□ -1.37
SYNE1-220ENST00000471834 MX1P20591 662 aa6.47□□□□□ -1.37
SYNE1-220ENST00000471834 OSBPL5Q9H0X9 879 aaPredicted RBP6.47□□□□□ -1.37
SYNE1-220ENST00000471834 AKAP12Q02952 1782 aa6.47□□□□□ -1.37
SYNE1-220ENST00000471834 OSCARQ8IYS5 282 aa6.47□□□□□ -1.37
SYNE1-220ENST00000471834 KCNF1Q9H3M0 494 aa6.47□□□□□ -1.37
SYNE1-220ENST00000471834 BCL9LQ86UU0 1499 aa6.47□□□□□ -1.37
SYNE1-220ENST00000471834 XRN1Q8IZH2 1706 aaKnown RBP6.47□□□□□ -1.37
SYNE1-220ENST00000471834 LMO7Q8WWI1 1683 aa6.47□□□□□ -1.37
SYNE1-220ENST00000471834 WDR33Q9C0J8 1336 aaKnown RBP6.47□□□□□ -1.37
SYNE1-220ENST00000471834 ERC2O15083 957 aa6.47□□□□□ -1.37
SYNE1-220ENST00000471834 IQCB1Q15051 598 aa6.47□□□□□ -1.37
SYNE1-220ENST00000471834 TMEM51Q9NW97 253 aa6.47□□□□□ -1.37
SYNE1-220ENST00000471834 ITSN1Q15811 1721 aa6.47□□□□□ -1.37
SYNE1-220ENST00000471834 ATP8B2P98198 1209 aa6.47□□□□□ -1.37
SYNE1-220ENST00000471834 PLA2G4DQ86XP0 818 aa6.47□□□□□ -1.37
SYNE1-220ENST00000471834 ELOA2Q8IYF1 753 aaPredicted RBP6.47□□□□□ -1.37
SYNE1-220ENST00000471834 PI4K2BQ8TCG2 481 aa6.47□□□□□ -1.37
SYNE1-220ENST00000471834 USP6P35125 1406 aa6.46□□□□□ -1.37
SYNE1-220ENST00000471834 OS9Q13438 667 aaPredicted RBP6.46□□□□□ -1.37
SYNE1-220ENST00000471834 WAPLQ7Z5K2 1190 aa6.46□□□□□ -1.37
SYNE1-220ENST00000471834 FAM208AQ9UK61 1670 aaKnown RBP6.46□□□□□ -1.37
SYNE1-220ENST00000471834 PLEKHG1Q9ULL1 1385 aa6.46□□□□□ -1.37
SYNE1-220ENST00000471834 U2AF1L5P0DN76 240 aaPredicted RBP6.46□□□□□ -1.37
SYNE1-220ENST00000471834 CSB-PGBD3P0DP91 1061 aa6.46□□□□□ -1.37
SYNE1-220ENST00000471834 U2AF1Q01081 240 aaKnown RBP eCLIP6.46□□□□□ -1.37
SYNE1-220ENST00000471834 NCBP1Q09161 790 aaKnown RBP6.46□□□□□ -1.37
SYNE1-220ENST00000471834 LNPKQ9C0E8 428 aa6.46□□□□□ -1.37
SYNE1-220ENST00000471834 MTMR6Q9Y217 621 aa6.46□□□□□ -1.37
SYNE1-220ENST00000471834 U2SURPO15042 1029 aaKnown RBP6.46□□□□□ -1.38
SYNE1-220ENST00000471834 MFAP1P55081 439 aaKnown RBP6.46□□□□□ -1.38
SYNE1-220ENST00000471834 ZGPATQ8N5A5 531 aaKnown RBP6.46□□□□□ -1.38
SYNE1-220ENST00000471834 C8orf58Q8NAV2 365 aa6.46□□□□□ -1.38
SYNE1-220ENST00000471834 ENGASEQ8NFI3 743 aa6.46□□□□□ -1.38
SYNE1-220ENST00000471834 FAM200AQ8TCP9 573 aa6.46□□□□□ -1.38
SYNE1-220ENST00000471834 KIF20BQ96Q89 1820 aa6.46□□□□□ -1.38
SYNE1-220ENST00000471834 ARID3AQ99856 593 aa6.46□□□□□ -1.38
SYNE1-220ENST00000471834 BCL2L12Q9HB09 334 aa6.46□□□□□ -1.38
SYNE1-220ENST00000471834 ADD1P35611 737 aaKnown RBP6.46□□□□□ -1.38
SYNE1-220ENST00000471834 TTC41PQ6P2S7 1318 aa6.46□□□□□ -1.38
SYNE1-220ENST00000471834 C1orf167Q5SNV9 1468 aa6.46□□□□□ -1.38
SYNE1-220ENST00000471834 NEMFO60524 1076 aa6.46□□□□□ -1.38
SYNE1-220ENST00000471834 UBE2HP62256 183 aa6.46□□□□□ -1.38
SYNE1-220ENST00000471834 OGFRQ9NZT2 677 aa6.46□□□□□ -1.38
SYNE1-220ENST00000471834 SALL1Q9NSC2 1324 aa6.45□□□□□ -1.38
SYNE1-220ENST00000471834 GLI3P10071 1580 aa6.45□□□□□ -1.38
SYNE1-220ENST00000471834 ZRSR1Q15695 479 aaKnown RBP6.45□□□□□ -1.38
SYNE1-220ENST00000471834 LSG1Q9H089 658 aaKnown RBP6.45□□□□□ -1.38
SYNE1-220ENST00000471834 IL25Q9H293 177 aa6.45□□□□□ -1.38
SYNE1-220ENST00000471834 PALD1Q9ULE6 856 aa6.45□□□□□ -1.38
SYNE1-220ENST00000471834 SAFB2Q14151 953 aaKnown RBP eCLIP6.45□□□□□ -1.38
SYNE1-220ENST00000471834 TWISTNBQ3B726 338 aaPredicted RBP6.45□□□□□ -1.38
SYNE1-220ENST00000471834 PRR36Q9H6K5 1346 aa6.45□□□□□ -1.38
SYNE1-220ENST00000471834 KDM4AO75164 1064 aa6.45□□□□□ -1.38
SYNE1-220ENST00000471834 NECTIN1Q15223 517 aa6.45□□□□□ -1.38
SYNE1-220ENST00000471834 TERF2Q15554 542 aa6.45□□□□□ -1.38
SYNE1-220ENST00000471834 KIAA2012Q0VF49 1180 aa6.45□□□□□ -1.38
SYNE1-220ENST00000471834 CHD2O14647 1828 aaKnown RBP6.45□□□□□ -1.38
SYNE1-220ENST00000471834 ST18O60284 1047 aa6.45□□□□□ -1.38
SYNE1-220ENST00000471834 PEAK1Q9H792 1746 aa6.45□□□□□ -1.38
SYNE1-220ENST00000471834 RPS6KA5O75582 802 aa6.44□□□□□ -1.38
SYNE1-220ENST00000471834 DHX8Q14562 1220 aaKnown RBP6.44□□□□□ -1.38
SYNE1-220ENST00000471834 ATL3Q6DD88 541 aa6.44□□□□□ -1.38
SYNE1-220ENST00000471834 PSD3Q9NYI0 1048 aa6.44□□□□□ -1.38
SYNE1-220ENST00000471834 SMTNL1A8MU46 457 aa6.44□□□□□ -1.38
SYNE1-220ENST00000471834 CHRM1P11229 460 aaPredicted RBP6.44□□□□□ -1.38
SYNE1-220ENST00000471834 PRKAR2BP31323 418 aa6.44□□□□□ -1.38
SYNE1-220ENST00000471834 CCDC183Q5T5S1 534 aa6.44□□□□□ -1.38
SYNE1-220ENST00000471834 SMARCC2Q8TAQ2 1214 aa6.44□□□□□ -1.38
SYNE1-220ENST00000471834 EID1Q9Y6B2 187 aa6.44□□□□□ -1.38
SYNE1-220ENST00000471834 ZSWIM6Q9HCJ5 1215 aa6.44□□□□□ -1.38
SYNE1-220ENST00000471834 CCT4P50991 539 aaKnown RBP6.44□□□□□ -1.38
SYNE1-220ENST00000471834 SH2B1Q9NRF2 756 aaPredicted RBP6.44□□□□□ -1.38
SYNE1-220ENST00000471834 SYT1P21579 422 aa6.43□□□□□ -1.38
SYNE1-220ENST00000471834 PRAM1Q96QH2 718 aa6.43□□□□□ -1.38
SYNE1-220ENST00000471834 MAP4K1Q92918 833 aa6.43□□□□□ -1.38
SYNE1-220ENST00000471834 OTUD7AQ8TE49 926 aaPredicted RBP6.43□□□□□ -1.38
SYNE1-220ENST00000471834 BPIFA3Q9BQP9 254 aa6.43□□□□□ -1.38
SYNE1-220ENST00000471834 CYP2C19P33261 490 aa6.43□□□□□ -1.38
SYNE1-220ENST00000471834 TMX1Q9H3N1 280 aa6.43□□□□□ -1.38
SYNE1-220ENST00000471834 PSDA5PKW4 1024 aaPredicted RBP6.43□□□□□ -1.38
SYNE1-220ENST00000471834 XPCQ01831 940 aaPredicted RBP6.43□□□□□ -1.38
SYNE1-220ENST00000471834 PAXIP1Q6ZW49 1069 aaPredicted RBP6.43□□□□□ -1.38
SYNE1-220ENST00000471834 C16orf71Q8IYS4 520 aaPredicted RBP6.43□□□□□ -1.38
SYNE1-220ENST00000471834 SYAP1Q96A49 352 aaPredicted RBP6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms