RNA–Protein interactions for RNA: ENST00000469356.3

SREBF1-208, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 3

Gene SREBF1, Length 1,323 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-208ENST00000469356 COL5A3P25940 1745 aaPredicted RBP29.62■■■□□ 2.33
SREBF1-208ENST00000469356 CRKLP46109 303 aaKnown RBP29.62■■■□□ 2.33
SREBF1-208ENST00000469356 CDCA7LQ96GN5 454 aa29.62■■■□□ 2.33
SREBF1-208ENST00000469356 CCDC87Q9NVE4 849 aa29.62■■■□□ 2.33
SREBF1-208ENST00000469356 C4BP0C0L5 1744 aa29.61■■■□□ 2.33
SREBF1-208ENST00000469356 LAMB4A4D0S4 1761 aa29.6■■■□□ 2.33
SREBF1-208ENST00000469356 EIF2S2P20042 333 aaKnown RBP29.6■■■□□ 2.33
SREBF1-208ENST00000469356 EXOSC9Q06265 439 aaKnown RBP29.6■■■□□ 2.33
SREBF1-208ENST00000469356 SLC15A2Q16348 729 aa29.6■■■□□ 2.33
SREBF1-208ENST00000469356 TWISTNBQ3B726 338 aaPredicted RBP29.6■■■□□ 2.33
SREBF1-208ENST00000469356 TRMT2AQ8IZ69 625 aaKnown RBP29.6■■■□□ 2.33
SREBF1-208ENST00000469356 FLAD1Q8NFF5 587 aa29.6■■■□□ 2.33
SREBF1-208ENST00000469356 TFCP2L1Q9NZI6 479 aa29.6■■■□□ 2.33
SREBF1-208ENST00000469356 ERBB4Q15303 1308 aa29.59■■■□□ 2.33
SREBF1-208ENST00000469356 ELL2O00472 640 aaPredicted RBP29.59■■■□□ 2.33
SREBF1-208ENST00000469356 C8orf58Q8NAV2 365 aa29.59■■■□□ 2.33
SREBF1-208ENST00000469356 AKT1S1Q96B36 256 aa29.59■■■□□ 2.33
SREBF1-208ENST00000469356 RTCBQ9Y3I0 505 aaKnown RBP29.59■■■□□ 2.33
SREBF1-208ENST00000469356 KRT24Q2M2I5 525 aa29.58■■■□□ 2.33
SREBF1-208ENST00000469356 HDGFL1Q5TGJ6 251 aa29.58■■■□□ 2.33
SREBF1-208ENST00000469356 PRAMEF22A3QJZ6 481 aa29.57■■■□□ 2.32
SREBF1-208ENST00000469356 GNPATO15228 680 aa29.57■■■□□ 2.32
SREBF1-208ENST00000469356 RPS6KA4O75676 772 aa29.57■■■□□ 2.32
SREBF1-208ENST00000469356 CT47B1P0C2W7 299 aaPredicted RBP29.56■■■□□ 2.32
SREBF1-208ENST00000469356 CCDC30Q5VVM6 783 aa29.56■■■□□ 2.32
SREBF1-208ENST00000469356 INTS5Q6P9B9 1019 aaKnown RBP29.55■■■□□ 2.32
SREBF1-208ENST00000469356 A1BGP04217 495 aa29.54■■■□□ 2.32
SREBF1-208ENST00000469356 ADRA2BP18089 450 aa29.54■■■□□ 2.32
SREBF1-208ENST00000469356 CANXP27824 592 aaKnown RBP29.54■■■□□ 2.32
SREBF1-208ENST00000469356 SSFA2P28290 1259 aa29.54■■■□□ 2.32
SREBF1-208ENST00000469356 IL6STP40189 918 aaPredicted RBP29.54■■■□□ 2.32
SREBF1-208ENST00000469356 MYH14Q7Z406 1995 aaKnown RBP29.54■■■□□ 2.32
SREBF1-208ENST00000469356 ZNF428Q96B54 188 aa29.53■■■□□ 2.32
SREBF1-208ENST00000469356 ZBTB1Q9Y2K1 713 aa29.53■■■□□ 2.32
SREBF1-208ENST00000469356 A0A087WZG4 1122 aa29.52■■■□□ 2.32
SREBF1-208ENST00000469356 ZNF827Q17R98 1081 aa29.52■■■□□ 2.32
SREBF1-208ENST00000469356 TRAPPC3LQ5T215 181 aa29.52■■■□□ 2.32
SREBF1-208ENST00000469356 TSPYL6Q8N831 410 aa29.52■■■□□ 2.32
SREBF1-208ENST00000469356 STK31Q9BXU1 1019 aa29.52■■■□□ 2.32
SREBF1-208ENST00000469356 ANO8Q9HCE9 1232 aaPredicted RBP29.52■■■□□ 2.32
SREBF1-208ENST00000469356 DBF4Q9UBU7 674 aaPredicted RBP29.52■■■□□ 2.32
SREBF1-208ENST00000469356 VAMP4O75379 141 aa29.51■■■□□ 2.32
SREBF1-208ENST00000469356 NECTIN2Q92692 538 aa29.49■■■□□ 2.31
SREBF1-208ENST00000469356 DDX21Q9NR30 783 aaKnown RBP eCLIP29.49■■■□□ 2.31
SREBF1-208ENST00000469356 UBR3Q6ZT12 1888 aa29.49■■■□□ 2.31
SREBF1-208ENST00000469356 QSER1Q2KHR3 1735 aa29.49■■■□□ 2.31
SREBF1-208ENST00000469356 ZNF330Q9Y3S2 320 aaPredicted RBP29.48■■■□□ 2.31
SREBF1-208ENST00000469356 CACNA1FO60840 1977 aa29.48■■■□□ 2.31
SREBF1-208ENST00000469356 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP29.47■■■□□ 2.31
SREBF1-208ENST00000469356 HYPKQ9NX55 129 aa29.47■■■□□ 2.31
SREBF1-208ENST00000469356 PHF14O94880 888 aa29.46■■■□□ 2.31
SREBF1-208ENST00000469356 MYL6BP14649 208 aa29.46■■■□□ 2.31
SREBF1-208ENST00000469356 RFC4P35249 363 aa29.46■■■□□ 2.31
SREBF1-208ENST00000469356 EIF5P55010 431 aaKnown RBP29.46■■■□□ 2.31
SREBF1-208ENST00000469356 MSH5O43196 834 aa29.45■■■□□ 2.31
SREBF1-208ENST00000469356 R3HDM1Q15032 1099 aaKnown RBP29.45■■■□□ 2.31
SREBF1-208ENST00000469356 NBPF26B4DH59 902 aa29.45■■■□□ 2.3
SREBF1-208ENST00000469356 COL15A1P39059 1388 aa29.45■■■□□ 2.3
SREBF1-208ENST00000469356 NBPF10Q6P3W6 841 aaKnown RBP29.45■■■□□ 2.3
SREBF1-208ENST00000469356 NBPF15Q8N660 670 aa29.45■■■□□ 2.3
SREBF1-208ENST00000469356 CHPF2Q9P2E5 772 aa29.45■■■□□ 2.3
SREBF1-208ENST00000469356 PNPLA7Q6ZV29 1317 aa29.44■■■□□ 2.3
SREBF1-208ENST00000469356 ARXQ96QS3 562 aa29.44■■■□□ 2.3
SREBF1-208ENST00000469356 ZPR1O75312 459 aa29.43■■■□□ 2.3
SREBF1-208ENST00000469356 SLC16A10Q8TF71 515 aa29.43■■■□□ 2.3
SREBF1-208ENST00000469356 ARHGEF1Q92888 912 aaKnown RBP29.43■■■□□ 2.3
SREBF1-208ENST00000469356 TUBGCP6Q96RT7 1819 aa29.42■■■□□ 2.3
SREBF1-208ENST00000469356 PIP4K2AP48426 406 aaPredicted RBP29.42■■■□□ 2.3
SREBF1-208ENST00000469356 PDIA6Q15084 440 aa29.42■■■□□ 2.3
SREBF1-208ENST00000469356 ALDH1L2Q3SY69 923 aa29.41■■■□□ 2.3
SREBF1-208ENST00000469356 KIF6Q6ZMV9 814 aa29.41■■■□□ 2.3
SREBF1-208ENST00000469356 SLC4A2P04920 1241 aa29.4■■■□□ 2.3
SREBF1-208ENST00000469356 DZIP3Q86Y13 1208 aaKnown RBP29.4■■■□□ 2.3
SREBF1-208ENST00000469356 COL23A1Q86Y22 540 aaPredicted RBP29.4■■■□□ 2.3
SREBF1-208ENST00000469356 NARFQ9UHQ1 456 aa29.39■■■□□ 2.3
SREBF1-208ENST00000469356 PSDA5PKW4 1024 aaPredicted RBP29.37■■■□□ 2.29
SREBF1-208ENST00000469356 DDX58O95786 925 aaKnown RBP29.37■■■□□ 2.29
SREBF1-208ENST00000469356 ANXA1P04083 346 aa29.37■■■□□ 2.29
SREBF1-208ENST00000469356 RGL2O15211 777 aa29.36■■■□□ 2.29
SREBF1-208ENST00000469356 PROSER3Q2NL68 480 aa29.36■■■□□ 2.29
SREBF1-208ENST00000469356 ZNF652Q9Y2D9 606 aa29.36■■■□□ 2.29
SREBF1-208ENST00000469356 TCERG1O14776 1098 aaKnown RBP29.35■■■□□ 2.29
SREBF1-208ENST00000469356 AIMP1Q12904 312 aaKnown RBP29.35■■■□□ 2.29
SREBF1-208ENST00000469356 COPS6Q7L5N1 327 aa29.35■■■□□ 2.29
SREBF1-208ENST00000469356 AMIGO3Q86WK7 504 aa29.35■■■□□ 2.29
SREBF1-208ENST00000469356 XAGE3Q8WTP9 111 aa29.35■■■□□ 2.29
SREBF1-208ENST00000469356 TBC1D2BQ9UPU7 963 aa29.35■■■□□ 2.29
SREBF1-208ENST00000469356 USP42Q9H9J4 1324 aaKnown RBP29.34■■■□□ 2.29
SREBF1-208ENST00000469356 ERVV-1B6SEH8 477 aa29.33■■■□□ 2.29
SREBF1-208ENST00000469356 SMIM5Q71RC9 77 aa29.33■■■□□ 2.29
SREBF1-208ENST00000469356 LRP10Q7Z4F1 713 aa29.33■■■□□ 2.29
SREBF1-208ENST00000469356 NLGN1Q8N2Q7 840 aa29.33■■■□□ 2.29
SREBF1-208ENST00000469356 SMC4Q9NTJ3 1288 aa29.33■■■□□ 2.29
SREBF1-208ENST00000469356 CLEC4GQ6UXB4 293 aa29.32■■■□□ 2.28
SREBF1-208ENST00000469356 C4AP0C0L4 1744 aa29.32■■■□□ 2.28
SREBF1-208ENST00000469356 MAP3K15Q6ZN16 1313 aa29.32■■■□□ 2.28
SREBF1-208ENST00000469356 USPL1Q5W0Q7 1092 aa29.31■■■□□ 2.28
SREBF1-208ENST00000469356 SSH1Q8WYL5 1049 aa29.31■■■□□ 2.28
SREBF1-208ENST00000469356 RARSP54136 660 aaKnown RBP29.3■■■□□ 2.28
SREBF1-208ENST00000469356 TTLL7Q6ZT98 887 aa29.3■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms