RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 LAS1LQ9Y4W2 734 aaKnown RBP18.98■□□□□ 0.63
SQSTM1-205ENST00000464493 KDM3BQ7LBC6 1761 aa18.98■□□□□ 0.63
SQSTM1-205ENST00000464493 EIF4A1P60842 406 aaKnown RBP18.97■□□□□ 0.63
SQSTM1-205ENST00000464493 CALD1Q05682 793 aaKnown RBP18.97■□□□□ 0.63
SQSTM1-205ENST00000464493 CCDC27Q2M243 656 aa18.97■□□□□ 0.63
SQSTM1-205ENST00000464493 NCBP3Q53F19 620 aaKnown RBP18.97■□□□□ 0.63
SQSTM1-205ENST00000464493 TRAPPC3LQ5T215 181 aa18.97■□□□□ 0.63
SQSTM1-205ENST00000464493 ATF5Q9Y2D1 282 aaPredicted RBP18.97■□□□□ 0.63
SQSTM1-205ENST00000464493 CHL1O00533 1208 aa18.96■□□□□ 0.63
SQSTM1-205ENST00000464493 USP16Q9Y5T5 823 aa18.96■□□□□ 0.63
SQSTM1-205ENST00000464493 PRAMEF22A3QJZ6 481 aa18.95■□□□□ 0.62
SQSTM1-205ENST00000464493 ADRA2BP18089 450 aa18.95■□□□□ 0.62
SQSTM1-205ENST00000464493 CFAP44Q96MT7 982 aa18.95■□□□□ 0.62
SQSTM1-205ENST00000464493 GIGYF1O75420 1035 aaPredicted RBP18.94■□□□□ 0.62
SQSTM1-205ENST00000464493 WWC1Q8IX03 1113 aa18.94■□□□□ 0.62
SQSTM1-205ENST00000464493 ARHGEF1Q92888 912 aaKnown RBP18.94■□□□□ 0.62
SQSTM1-205ENST00000464493 ZBTB1Q9Y2K1 713 aa18.94■□□□□ 0.62
SQSTM1-205ENST00000464493 SALL2Q9Y467 1007 aaPredicted RBP18.94■□□□□ 0.62
SQSTM1-205ENST00000464493 CANXP27824 592 aaKnown RBP18.93■□□□□ 0.62
SQSTM1-205ENST00000464493 A1BGP04217 495 aa18.92■□□□□ 0.62
SQSTM1-205ENST00000464493 ZNF853P0CG23 659 aa18.92■□□□□ 0.62
SQSTM1-205ENST00000464493 RFC4P35249 363 aa18.92■□□□□ 0.62
SQSTM1-205ENST00000464493 GNAI1P63096 354 aa18.92■□□□□ 0.62
SQSTM1-205ENST00000464493 IFT57Q9NWB7 429 aa18.92■□□□□ 0.62
SQSTM1-205ENST00000464493 SOS1Q07889 1333 aaPredicted RBP18.92■□□□□ 0.62
SQSTM1-205ENST00000464493 LRP5O75197 1615 aa18.92■□□□□ 0.62
SQSTM1-205ENST00000464493 PTGER2P43116 358 aa18.91■□□□□ 0.62
SQSTM1-205ENST00000464493 NGEFQ8N5V2 710 aa18.91■□□□□ 0.62
SQSTM1-205ENST00000464493 MBIPQ9NS73 344 aa18.9■□□□□ 0.62
SQSTM1-205ENST00000464493 EIF5P55010 431 aaKnown RBP18.89■□□□□ 0.61
SQSTM1-205ENST00000464493 MSL1Q68DK7 614 aa18.89■□□□□ 0.61
SQSTM1-205ENST00000464493 SGIP1Q9BQI5 828 aa18.89■□□□□ 0.61
SQSTM1-205ENST00000464493 POLD1P28340 1107 aa18.88■□□□□ 0.61
SQSTM1-205ENST00000464493 IL6STP40189 918 aaPredicted RBP18.88■□□□□ 0.61
SQSTM1-205ENST00000464493 WDR63Q8IWG1 891 aa18.88■□□□□ 0.61
SQSTM1-205ENST00000464493 PPP1R1BQ9UD71 204 aaPredicted RBP18.88■□□□□ 0.61
SQSTM1-205ENST00000464493 A0A087WZG4 1122 aa18.87■□□□□ 0.61
SQSTM1-205ENST00000464493 COL15A1P39059 1388 aa18.87■□□□□ 0.61
SQSTM1-205ENST00000464493 IL16Q14005 1332 aa18.87■□□□□ 0.61
SQSTM1-205ENST00000464493 NPM2Q86SE8 214 aaKnown RBP18.87■□□□□ 0.61
SQSTM1-205ENST00000464493 LAMB4A4D0S4 1761 aa18.86■□□□□ 0.61
SQSTM1-205ENST00000464493 C4AP0C0L4 1744 aa18.86■□□□□ 0.61
SQSTM1-205ENST00000464493 COL24A1Q17RW2 1714 aa18.86■□□□□ 0.61
SQSTM1-205ENST00000464493 ZPR1O75312 459 aa18.86■□□□□ 0.61
SQSTM1-205ENST00000464493 PIP4K2AP48426 406 aaPredicted RBP18.86■□□□□ 0.61
SQSTM1-205ENST00000464493 KRT24Q2M2I5 525 aa18.86■□□□□ 0.61
SQSTM1-205ENST00000464493 SRP68Q9UHB9 627 aaKnown RBP18.86■□□□□ 0.61
SQSTM1-205ENST00000464493 ZNF330Q9Y3S2 320 aaPredicted RBP18.86■□□□□ 0.61
SQSTM1-205ENST00000464493 USP42Q9H9J4 1324 aaKnown RBP18.85■□□□□ 0.61
SQSTM1-205ENST00000464493 NBPF26B4DH59 902 aa18.85■□□□□ 0.61
SQSTM1-205ENST00000464493 GYS1P13807 737 aa18.85■□□□□ 0.61
SQSTM1-205ENST00000464493 EIF2S2P20042 333 aaKnown RBP18.85■□□□□ 0.61
SQSTM1-205ENST00000464493 NBPF10Q6P3W6 841 aaKnown RBP18.85■□□□□ 0.61
SQSTM1-205ENST00000464493 NLGN1Q8N2Q7 840 aa18.85■□□□□ 0.61
SQSTM1-205ENST00000464493 NBPF15Q8N660 670 aa18.85■□□□□ 0.61
SQSTM1-205ENST00000464493 ARXQ96QS3 562 aa18.85■□□□□ 0.61
SQSTM1-205ENST00000464493 NARFQ9UHQ1 456 aa18.85■□□□□ 0.61
SQSTM1-205ENST00000464493 USPL1Q5W0Q7 1092 aa18.84■□□□□ 0.61
SQSTM1-205ENST00000464493 HOXB7P09629 217 aa18.83■□□□□ 0.6
SQSTM1-205ENST00000464493 DUSP27Q5VZP5 1158 aa18.83■□□□□ 0.6
SQSTM1-205ENST00000464493 TSR2Q969E8 191 aaKnown RBP18.83■□□□□ 0.6
SQSTM1-205ENST00000464493 ERBB4Q15303 1308 aa18.82■□□□□ 0.6
SQSTM1-205ENST00000464493 TBC1D2BQ9UPU7 963 aa18.82■□□□□ 0.6
SQSTM1-205ENST00000464493 FKBP8Q14318 412 aa18.81■□□□□ 0.6
SQSTM1-205ENST00000464493 NECTIN2Q92692 538 aa18.81■□□□□ 0.6
SQSTM1-205ENST00000464493 ZNF521Q96K83 1311 aa18.8■□□□□ 0.6
SQSTM1-205ENST00000464493 ELL2O00472 640 aaPredicted RBP18.8■□□□□ 0.6
SQSTM1-205ENST00000464493 MMP10P09238 476 aa18.8■□□□□ 0.6
SQSTM1-205ENST00000464493 MYL6BP14649 208 aa18.8■□□□□ 0.6
SQSTM1-205ENST00000464493 DZIP3Q86Y13 1208 aaKnown RBP18.8■□□□□ 0.6
SQSTM1-205ENST00000464493 C8orf58Q8NAV2 365 aa18.8■□□□□ 0.6
SQSTM1-205ENST00000464493 HDGFL1Q5TGJ6 251 aa18.79■□□□□ 0.6
SQSTM1-205ENST00000464493 BCL2L12Q9HB09 334 aa18.79■□□□□ 0.6
SQSTM1-205ENST00000464493 CAMTA2O94983 1202 aa18.78■□□□□ 0.6
SQSTM1-205ENST00000464493 PDIA6Q15084 440 aa18.78■□□□□ 0.6
SQSTM1-205ENST00000464493 SPINK5Q9NQ38 1064 aaPredicted RBP18.78■□□□□ 0.6
SQSTM1-205ENST00000464493 FANCIQ9NVI1 1328 aa18.77■□□□□ 0.6
SQSTM1-205ENST00000464493 TM4SF1P30408 202 aa18.77■□□□□ 0.6
SQSTM1-205ENST00000464493 GOLGA2Q08379 1002 aa18.77■□□□□ 0.6
SQSTM1-205ENST00000464493 TSPYL6Q8N831 410 aa18.77■□□□□ 0.6
SQSTM1-205ENST00000464493 FHDC1Q9C0D6 1143 aaPredicted RBP18.77■□□□□ 0.6
SQSTM1-205ENST00000464493 MYH16Q9H6N6 1097 aa18.77■□□□□ 0.6
SQSTM1-205ENST00000464493 PARP3Q9Y6F1 533 aa18.77■□□□□ 0.6
SQSTM1-205ENST00000464493 ANXA1P04083 346 aa18.76■□□□□ 0.59
SQSTM1-205ENST00000464493 PROSER3Q2NL68 480 aa18.76■□□□□ 0.59
SQSTM1-205ENST00000464493 CHMP4AQ9BY43 222 aa18.76■□□□□ 0.59
SQSTM1-205ENST00000464493 DDX21Q9NR30 783 aaKnown RBP eCLIP18.76■□□□□ 0.59
SQSTM1-205ENST00000464493 CHPF2Q9P2E5 772 aa18.76■□□□□ 0.59
SQSTM1-205ENST00000464493 NFIXQ14938 502 aa18.75■□□□□ 0.59
SQSTM1-205ENST00000464493 LRP10Q7Z4F1 713 aa18.75■□□□□ 0.59
SQSTM1-205ENST00000464493 KLHL34Q8N239 644 aa18.75■□□□□ 0.59
SQSTM1-205ENST00000464493 SYT17Q9BSW7 474 aa18.75■□□□□ 0.59
SQSTM1-205ENST00000464493 DBF4Q9UBU7 674 aaPredicted RBP18.75■□□□□ 0.59
SQSTM1-205ENST00000464493 TWISTNBQ3B726 338 aaPredicted RBP18.74■□□□□ 0.59
SQSTM1-205ENST00000464493 CLEC4GQ6UXB4 293 aa18.74■□□□□ 0.59
SQSTM1-205ENST00000464493 KIF6Q6ZMV9 814 aa18.74■□□□□ 0.59
SQSTM1-205ENST00000464493 TTLL7Q6ZT98 887 aa18.74■□□□□ 0.59
SQSTM1-205ENST00000464493 ZNF652Q9Y2D9 606 aa18.74■□□□□ 0.59
SQSTM1-205ENST00000464493 SCN7AQ01118 1682 aa18.73■□□□□ 0.59
SQSTM1-205ENST00000464493 ERVV-1B6SEH8 477 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms