RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 RTCBQ9Y3I0 505 aaKnown RBP36.57■■■■□ 3.44
SMARCC1-203ENST00000454240 LAS1LQ9Y4W2 734 aaKnown RBP36.56■■■■□ 3.44
SMARCC1-203ENST00000454240 PRAMEF22A3QJZ6 481 aa36.55■■■■□ 3.44
SMARCC1-203ENST00000454240 ZNF853P0CG23 659 aa36.55■■■■□ 3.44
SMARCC1-203ENST00000454240 SLC16A10Q8TF71 515 aa36.55■■■■□ 3.44
SMARCC1-203ENST00000454240 USP16Q9Y5T5 823 aa36.55■■■■□ 3.44
SMARCC1-203ENST00000454240 PHF14O94880 888 aa36.54■■■■□ 3.44
SMARCC1-203ENST00000454240 NGEFQ8N5V2 710 aa36.54■■■■□ 3.44
SMARCC1-203ENST00000454240 GIGYF1O75420 1035 aaPredicted RBP36.53■■■■□ 3.44
SMARCC1-203ENST00000454240 IFT57Q9NWB7 429 aa36.53■■■■□ 3.44
SMARCC1-203ENST00000454240 LAMB4A4D0S4 1761 aa36.53■■■■□ 3.44
SMARCC1-203ENST00000454240 ZBTB7AO95365 584 aa36.52■■■■□ 3.44
SMARCC1-203ENST00000454240 MTFR1LQ9H019 292 aa36.52■■■■□ 3.44
SMARCC1-203ENST00000454240 ZBTB1Q9Y2K1 713 aa36.52■■■■□ 3.44
SMARCC1-203ENST00000454240 LRP5O75197 1615 aa36.52■■■■□ 3.44
SMARCC1-203ENST00000454240 ADRA2BP18089 450 aa36.51■■■■□ 3.44
SMARCC1-203ENST00000454240 TRAPPC3LQ5T215 181 aa36.51■■■■□ 3.44
SMARCC1-203ENST00000454240 SALL2Q9Y467 1007 aaPredicted RBP36.51■■■■□ 3.44
SMARCC1-203ENST00000454240 COL24A1Q17RW2 1714 aa36.51■■■■□ 3.43
SMARCC1-203ENST00000454240 MSH5O43196 834 aa36.5■■■■□ 3.43
SMARCC1-203ENST00000454240 GNAI1P63096 354 aa36.5■■■■□ 3.43
SMARCC1-203ENST00000454240 C4AP0C0L4 1744 aa36.49■■■■□ 3.43
SMARCC1-203ENST00000454240 SPON1Q9HCB6 807 aa36.49■■■■□ 3.43
SMARCC1-203ENST00000454240 ARHGEF1Q92888 912 aaKnown RBP36.48■■■■□ 3.43
SMARCC1-203ENST00000454240 MBIPQ9NS73 344 aa36.48■■■■□ 3.43
SMARCC1-203ENST00000454240 SOS1Q07889 1333 aaPredicted RBP36.48■■■■□ 3.43
SMARCC1-203ENST00000454240 A1BGP04217 495 aa36.47■■■■□ 3.43
SMARCC1-203ENST00000454240 IL16Q14005 1332 aa36.46■■■■□ 3.43
SMARCC1-203ENST00000454240 ATF5Q9Y2D1 282 aaPredicted RBP36.46■■■■□ 3.43
SMARCC1-203ENST00000454240 CANXP27824 592 aaKnown RBP36.45■■■■□ 3.43
SMARCC1-203ENST00000454240 WDR63Q8IWG1 891 aa36.45■■■■□ 3.43
SMARCC1-203ENST00000454240 SRCAPQ6ZRS2 3230 aa36.44■■■■□ 3.42
SMARCC1-203ENST00000454240 EIF5P55010 431 aaKnown RBP36.42■■■■□ 3.42
SMARCC1-203ENST00000454240 RFC4P35249 363 aa36.41■■■■□ 3.42
SMARCC1-203ENST00000454240 IL6STP40189 918 aaPredicted RBP36.41■■■■□ 3.42
SMARCC1-203ENST00000454240 PTGER2P43116 358 aa36.41■■■■□ 3.42
SMARCC1-203ENST00000454240 SGIP1Q9BQI5 828 aa36.41■■■■□ 3.42
SMARCC1-203ENST00000454240 KRT24Q2M2I5 525 aa36.4■■■■□ 3.42
SMARCC1-203ENST00000454240 COL15A1P39059 1388 aa36.4■■■■□ 3.42
SMARCC1-203ENST00000454240 ZNF521Q96K83 1311 aa36.38■■■■□ 3.41
SMARCC1-203ENST00000454240 NBPF26B4DH59 902 aa36.37■■■■□ 3.41
SMARCC1-203ENST00000454240 NBPF10Q6P3W6 841 aaKnown RBP36.37■■■■□ 3.41
SMARCC1-203ENST00000454240 NBPF15Q8N660 670 aa36.37■■■■□ 3.41
SMARCC1-203ENST00000454240 USP42Q9H9J4 1324 aaKnown RBP36.35■■■■□ 3.41
SMARCC1-203ENST00000454240 PIP4K2AP48426 406 aaPredicted RBP36.35■■■■□ 3.41
SMARCC1-203ENST00000454240 HOXB7P09629 217 aa36.34■■■■□ 3.41
SMARCC1-203ENST00000454240 MSL1Q68DK7 614 aa36.34■■■■□ 3.41
SMARCC1-203ENST00000454240 TSR2Q969E8 191 aaKnown RBP36.34■■■■□ 3.41
SMARCC1-203ENST00000454240 A0A087WZG4 1122 aa36.33■■■■□ 3.41
SMARCC1-203ENST00000454240 GYS1P13807 737 aa36.33■■■■□ 3.41
SMARCC1-203ENST00000454240 SRP68Q9UHB9 627 aaKnown RBP36.33■■■■□ 3.41
SMARCC1-203ENST00000454240 NARFQ9UHQ1 456 aa36.33■■■■□ 3.41
SMARCC1-203ENST00000454240 DUSP27Q5VZP5 1158 aa36.32■■■■□ 3.4
SMARCC1-203ENST00000454240 ERBB4Q15303 1308 aa36.32■■■■□ 3.4
SMARCC1-203ENST00000454240 EIF2S2P20042 333 aaKnown RBP36.31■■■■□ 3.4
SMARCC1-203ENST00000454240 ZNF330Q9Y3S2 320 aaPredicted RBP36.31■■■■□ 3.4
SMARCC1-203ENST00000454240 ZPR1O75312 459 aa36.3■■■■□ 3.4
SMARCC1-203ENST00000454240 NLGN1Q8N2Q7 840 aa36.3■■■■□ 3.4
SMARCC1-203ENST00000454240 SPINK5Q9NQ38 1064 aaPredicted RBP36.3■■■■□ 3.4
SMARCC1-203ENST00000454240 POLD1P28340 1107 aa36.29■■■■□ 3.4
SMARCC1-203ENST00000454240 C8orf58Q8NAV2 365 aa36.29■■■■□ 3.4
SMARCC1-203ENST00000454240 USPL1Q5W0Q7 1092 aa36.28■■■■□ 3.4
SMARCC1-203ENST00000454240 NPM2Q86SE8 214 aaKnown RBP36.28■■■■□ 3.4
SMARCC1-203ENST00000454240 FANCIQ9NVI1 1328 aa36.27■■■■□ 3.4
SMARCC1-203ENST00000454240 PDIA6Q15084 440 aa36.26■■■■□ 3.4
SMARCC1-203ENST00000454240 TBC1D2BQ9UPU7 963 aa36.26■■■■□ 3.4
SMARCC1-203ENST00000454240 BCL2L12Q9HB09 334 aa36.25■■■■□ 3.39
SMARCC1-203ENST00000454240 SCN7AQ01118 1682 aa36.25■■■■□ 3.39
SMARCC1-203ENST00000454240 BCORQ6W2J9 1755 aa36.25■■■■□ 3.39
SMARCC1-203ENST00000454240 ELL2O00472 640 aaPredicted RBP36.24■■■■□ 3.39
SMARCC1-203ENST00000454240 FKBP8Q14318 412 aa36.24■■■■□ 3.39
SMARCC1-203ENST00000454240 HDGFL1Q5TGJ6 251 aa36.24■■■■□ 3.39
SMARCC1-203ENST00000454240 DZIP3Q86Y13 1208 aaKnown RBP36.24■■■■□ 3.39
SMARCC1-203ENST00000454240 NECTIN2Q92692 538 aa36.24■■■■□ 3.39
SMARCC1-203ENST00000454240 ARXQ96QS3 562 aa36.24■■■■□ 3.39
SMARCC1-203ENST00000454240 MYL6BP14649 208 aa36.23■■■■□ 3.39
SMARCC1-203ENST00000454240 LRP10Q7Z4F1 713 aa36.23■■■■□ 3.39
SMARCC1-203ENST00000454240 TSPYL6Q8N831 410 aa36.23■■■■□ 3.39
SMARCC1-203ENST00000454240 PPP1R1BQ9UD71 204 aaPredicted RBP36.23■■■■□ 3.39
SMARCC1-203ENST00000454240 GOLGA2Q08379 1002 aa36.22■■■■□ 3.39
SMARCC1-203ENST00000454240 MYH16Q9H6N6 1097 aa36.22■■■■□ 3.39
SMARCC1-203ENST00000454240 CAMTA2O94983 1202 aa36.21■■■■□ 3.39
SMARCC1-203ENST00000454240 PROSER3Q2NL68 480 aa36.2■■■■□ 3.39
SMARCC1-203ENST00000454240 DDX21Q9NR30 783 aaKnown RBP eCLIP36.2■■■■□ 3.39
SMARCC1-203ENST00000454240 MMP10P09238 476 aa36.19■■■■□ 3.38
SMARCC1-203ENST00000454240 TM4SF1P30408 202 aa36.18■■■■□ 3.38
SMARCC1-203ENST00000454240 ANXA1P04083 346 aa36.17■■■■□ 3.38
SMARCC1-203ENST00000454240 CHPF2Q9P2E5 772 aa36.17■■■■□ 3.38
SMARCC1-203ENST00000454240 TWISTNBQ3B726 338 aaPredicted RBP36.16■■■■□ 3.38
SMARCC1-203ENST00000454240 DBF4Q9UBU7 674 aaPredicted RBP36.16■■■■□ 3.38
SMARCC1-203ENST00000454240 E9PSI1 815 aa36.15■■■■□ 3.38
SMARCC1-203ENST00000454240 EXOSC9Q06265 439 aaKnown RBP36.15■■■■□ 3.38
SMARCC1-203ENST00000454240 CHMP4AQ9BY43 222 aa36.15■■■■□ 3.38
SMARCC1-203ENST00000454240 RGL2O15211 777 aa36.14■■■■□ 3.38
SMARCC1-203ENST00000454240 SLFN5Q08AF3 891 aa36.14■■■■□ 3.38
SMARCC1-203ENST00000454240 TTLL7Q6ZT98 887 aa36.14■■■■□ 3.38
SMARCC1-203ENST00000454240 NFIXQ14938 502 aa36.13■■■■□ 3.37
SMARCC1-203ENST00000454240 CLEC4GQ6UXB4 293 aa36.13■■■■□ 3.37
SMARCC1-203ENST00000454240 NUP98P52948 1817 aa36.13■■■■□ 3.37
SMARCC1-203ENST00000454240 ERVV-1B6SEH8 477 aa36.11■■■■□ 3.37
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms