RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 SOS1Q07889 1333 aaPredicted RBP13.4□□□□□ -0.26
DDX56-203ENST00000421223 PDIA4P13667 645 aaKnown RBP13.4□□□□□ -0.26
DDX56-203ENST00000421223 RHPN1Q8TCX5 695 aa13.4□□□□□ -0.26
DDX56-203ENST00000421223 TNPO1Q92973 898 aaKnown RBP13.4□□□□□ -0.26
DDX56-203ENST00000421223 CADPS2Q86UW7 1296 aa13.4□□□□□ -0.26
DDX56-203ENST00000421223 TTC5Q8N0Z6 440 aa13.4□□□□□ -0.26
DDX56-203ENST00000421223 NEK4P51957 841 aa13.39□□□□□ -0.27
DDX56-203ENST00000421223 RABEP1Q15276 862 aa13.39□□□□□ -0.27
DDX56-203ENST00000421223 TRAK2O60296 914 aa13.39□□□□□ -0.27
DDX56-203ENST00000421223 PDE4CQ08493 712 aa13.39□□□□□ -0.27
DDX56-203ENST00000421223 ZNF790Q6PG37 636 aa13.39□□□□□ -0.27
DDX56-203ENST00000421223 STRN4Q9NRL3 753 aa13.39□□□□□ -0.27
DDX56-203ENST00000421223 SPG7Q9UQ90 795 aa13.39□□□□□ -0.27
DDX56-203ENST00000421223 RGPD2P0DJD1 1756 aa13.39□□□□□ -0.27
DDX56-203ENST00000421223 SSFA2P28290 1259 aa13.39□□□□□ -0.27
DDX56-203ENST00000421223 SSH3Q8TE77 659 aa13.39□□□□□ -0.27
DDX56-203ENST00000421223 PRDM11Q9NQV5 511 aa13.39□□□□□ -0.27
DDX56-203ENST00000421223 IBTKQ9P2D0 1353 aaPredicted RBP13.39□□□□□ -0.27
DDX56-203ENST00000421223 KSR2Q6VAB6 950 aa13.38□□□□□ -0.27
DDX56-203ENST00000421223 ZNF496Q96IT1 587 aaPredicted RBP13.38□□□□□ -0.27
DDX56-203ENST00000421223 CHMP4AQ9BY43 222 aa13.38□□□□□ -0.27
DDX56-203ENST00000421223 NPHP3Q7Z494 1330 aa13.38□□□□□ -0.27
DDX56-203ENST00000421223 ST18O60284 1047 aa13.38□□□□□ -0.27
DDX56-203ENST00000421223 TOM1L2Q6ZVM7 507 aa13.38□□□□□ -0.27
DDX56-203ENST00000421223 COPS6Q7L5N1 327 aa13.38□□□□□ -0.27
DDX56-203ENST00000421223 DDX54Q8TDD1 881 aaKnown RBP13.38□□□□□ -0.27
DDX56-203ENST00000421223 ZNF330Q9Y3S2 320 aaPredicted RBP13.38□□□□□ -0.27
DDX56-203ENST00000421223 CCDC9Q9Y3X0 531 aaKnown RBP13.38□□□□□ -0.27
DDX56-203ENST00000421223 USP16Q9Y5T5 823 aa13.38□□□□□ -0.27
DDX56-203ENST00000421223 MARF1Q9Y4F3 1742 aaKnown RBP13.38□□□□□ -0.27
DDX56-203ENST00000421223 ADCY9O60503 1353 aa13.37□□□□□ -0.27
DDX56-203ENST00000421223 KLHDC4Q8TBB5 520 aa13.37□□□□□ -0.27
DDX56-203ENST00000421223 XAGE3Q8WTP9 111 aa13.37□□□□□ -0.27
DDX56-203ENST00000421223 UPF3BQ9BZI7 483 aaKnown RBP13.37□□□□□ -0.27
DDX56-203ENST00000421223 DDX58O95786 925 aaKnown RBP13.37□□□□□ -0.27
DDX56-203ENST00000421223 HOXB7P09629 217 aa13.37□□□□□ -0.27
DDX56-203ENST00000421223 CABP4P57796 275 aa13.37□□□□□ -0.27
DDX56-203ENST00000421223 IFNL2Q8IZJ0 200 aa13.37□□□□□ -0.27
DDX56-203ENST00000421223 KIF1BPQ96EK5 621 aa13.37□□□□□ -0.27
DDX56-203ENST00000421223 ESYT1Q9BSJ8 1104 aa13.37□□□□□ -0.27
DDX56-203ENST00000421223 PHKG2P15735 406 aa13.37□□□□□ -0.27
DDX56-203ENST00000421223 CHMLP26374 656 aa13.37□□□□□ -0.27
DDX56-203ENST00000421223 MYD88Q99836 296 aa13.37□□□□□ -0.27
DDX56-203ENST00000421223 SLC52A2Q9HAB3 445 aa13.37□□□□□ -0.27
DDX56-203ENST00000421223 ADAMTSL3P82987 1691 aa13.36□□□□□ -0.27
DDX56-203ENST00000421223 ATP5J2-PTCD1G3V325 749 aa13.36□□□□□ -0.27
DDX56-203ENST00000421223 PTCD1O75127 700 aaKnown RBP13.36□□□□□ -0.27
DDX56-203ENST00000421223 ZGPATQ8N5A5 531 aaKnown RBP13.36□□□□□ -0.27
DDX56-203ENST00000421223 OSBPL3Q9H4L5 887 aa13.36□□□□□ -0.27
DDX56-203ENST00000421223 HYPKQ9NX55 129 aa13.36□□□□□ -0.27
DDX56-203ENST00000421223 NCLP19338 710 aaKnown RBP13.36□□□□□ -0.27
DDX56-203ENST00000421223 CWC27Q6UX04 472 aaKnown RBP13.36□□□□□ -0.27
DDX56-203ENST00000421223 PALD1Q9ULE6 856 aa13.36□□□□□ -0.27
DDX56-203ENST00000421223 CYP27B1O15528 508 aa13.35□□□□□ -0.27
DDX56-203ENST00000421223 FOXD4L6Q3SYB3 417 aaPredicted RBP13.35□□□□□ -0.27
DDX56-203ENST00000421223 FOXD4L3Q6VB84 417 aaPredicted RBP13.35□□□□□ -0.27
DDX56-203ENST00000421223 CLASRPQ8N2M8 674 aaKnown RBP13.35□□□□□ -0.27
DDX56-203ENST00000421223 LARP6Q9BRS8 491 aaKnown RBP13.35□□□□□ -0.27
DDX56-203ENST00000421223 IFIT2P09913 472 aaKnown RBP13.35□□□□□ -0.27
DDX56-203ENST00000421223 MCCP23508 829 aa13.35□□□□□ -0.27
DDX56-203ENST00000421223 NEXNQ0ZGT2 675 aa13.35□□□□□ -0.27
DDX56-203ENST00000421223 TPRNQ4KMQ1 711 aa13.35□□□□□ -0.27
DDX56-203ENST00000421223 GBP4Q96PP9 640 aa13.35□□□□□ -0.27
DDX56-203ENST00000421223 CCDC8Q9H0W5 538 aaPredicted RBP13.35□□□□□ -0.27
DDX56-203ENST00000421223 DDX21Q9NR30 783 aaKnown RBP eCLIP13.35□□□□□ -0.27
DDX56-203ENST00000421223 RAB11FIP3O75154 756 aa13.34□□□□□ -0.27
DDX56-203ENST00000421223 SUCLG2Q96I99 432 aa13.34□□□□□ -0.27
DDX56-203ENST00000421223 IL25Q9H293 177 aa13.34□□□□□ -0.27
DDX56-203ENST00000421223 BICC1Q9H694 974 aaKnown RBP13.34□□□□□ -0.27
DDX56-203ENST00000421223 CHMP3Q9Y3E7 222 aa13.34□□□□□ -0.27
DDX56-203ENST00000421223 GRM8O00222 908 aa13.34□□□□□ -0.27
DDX56-203ENST00000421223 PKP1Q13835 747 aa13.34□□□□□ -0.27
DDX56-203ENST00000421223 AACSQ86V21 672 aa13.34□□□□□ -0.27
DDX56-203ENST00000421223 A0A0G2JS52 829 aa13.33□□□□□ -0.28
DDX56-203ENST00000421223 DTNBO60941 627 aa13.33□□□□□ -0.28
DDX56-203ENST00000421223 EVA1CP58658 441 aa13.33□□□□□ -0.28
DDX56-203ENST00000421223 G3BP1Q13283 466 aaKnown RBP eCLIP13.33□□□□□ -0.285e-8■□□□□ 8.8
DDX56-203ENST00000421223 POLA2Q14181 598 aa13.33□□□□□ -0.28
DDX56-203ENST00000421223 CHAMP1Q96JM3 812 aa13.33□□□□□ -0.28
DDX56-203ENST00000421223 LINS1Q8NG48 757 aa13.33□□□□□ -0.28
DDX56-203ENST00000421223 SALL3Q9BXA9 1300 aa13.32□□□□□ -0.28
DDX56-203ENST00000421223 DDX11L8A8MPP1 907 aa13.32□□□□□ -0.28
DDX56-203ENST00000421223 RAB3GAP1Q15042 981 aa13.32□□□□□ -0.28
DDX56-203ENST00000421223 HSP90AB4PQ58FF6 505 aa13.32□□□□□ -0.28
DDX56-203ENST00000421223 KIAA1211Q6ZU35 1233 aa13.32□□□□□ -0.28
DDX56-203ENST00000421223 BRINP3Q76B58 766 aa13.32□□□□□ -0.28
DDX56-203ENST00000421223 MST1RQ04912 1400 aa13.32□□□□□ -0.28
DDX56-203ENST00000421223 PDIA6Q15084 440 aa13.31□□□□□ -0.28
DDX56-203ENST00000421223 MCTP1Q6DN14 999 aa13.31□□□□□ -0.28
DDX56-203ENST00000421223 ANKRD13DQ6ZTN6 518 aa13.31□□□□□ -0.28
DDX56-203ENST00000421223 ZNF335Q9H4Z2 1342 aaPredicted RBP13.31□□□□□ -0.28
DDX56-203ENST00000421223 ALDH1L1O75891 902 aa13.31□□□□□ -0.28
DDX56-203ENST00000421223 IGKV5-2P06315 115 aa13.31□□□□□ -0.28
DDX56-203ENST00000421223 SNRPA1P09661 255 aaKnown RBP13.31□□□□□ -0.28
DDX56-203ENST00000421223 LARP1Q6PKG0 1096 aaKnown RBP13.31□□□□□ -0.28
DDX56-203ENST00000421223 UBE3BQ7Z3V4 1068 aa13.31□□□□□ -0.28
DDX56-203ENST00000421223 CNTROBQ8N137 903 aa13.31□□□□□ -0.28
DDX56-203ENST00000421223 DIAPH3Q9NSV4 1193 aa13.31□□□□□ -0.28
DDX56-203ENST00000421223 STAP2Q9UGK3 403 aa13.31□□□□□ -0.28
DDX56-203ENST00000421223 ZNF142P52746 1687 aaPredicted RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms