RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 ITGB4P16144 1822 aa18.76■□□□□ 0.59
USP4-203ENST00000415188 DLG5Q8TDM6 1919 aa18.76■□□□□ 0.59
USP4-203ENST00000415188 PHKG2P15735 406 aa18.75■□□□□ 0.59
USP4-203ENST00000415188 IFT57Q9NWB7 429 aa18.75■□□□□ 0.59
USP4-203ENST00000415188 PCDHB15Q9Y5E8 787 aa18.75■□□□□ 0.59
USP4-203ENST00000415188 COL23A1Q86Y22 540 aaPredicted RBP18.74■□□□□ 0.59
USP4-203ENST00000415188 IFNL2Q8IZJ0 200 aa18.74■□□□□ 0.59
USP4-203ENST00000415188 C5P01031 1676 aa18.73■□□□□ 0.59
USP4-203ENST00000415188 TRIM27P14373 513 aa18.73■□□□□ 0.59
USP4-203ENST00000415188 YY1P25490 414 aa18.73■□□□□ 0.59
USP4-203ENST00000415188 GNAI1P63096 354 aa18.73■□□□□ 0.59
USP4-203ENST00000415188 HDAC1Q13547 482 aaPredicted RBP18.73■□□□□ 0.59
USP4-203ENST00000415188 CHMP4BQ9H444 224 aaKnown RBP18.73■□□□□ 0.59
USP4-203ENST00000415188 TNNQ9UQP3 1299 aa18.73■□□□□ 0.59
USP4-203ENST00000415188 SMARCC1Q92922 1105 aaPredicted RBP18.72■□□□□ 0.59
USP4-203ENST00000415188 POLD1P28340 1107 aa18.71■□□□□ 0.59
USP4-203ENST00000415188 AEBP1Q8IUX7 1158 aa18.71■□□□□ 0.59
USP4-203ENST00000415188 KLHL34Q8N239 644 aa18.71■□□□□ 0.59
USP4-203ENST00000415188 TMOD3Q9NYL9 352 aa18.71■□□□□ 0.59
USP4-203ENST00000415188 ZNF853P0CG23 659 aa18.71■□□□□ 0.59
USP4-203ENST00000415188 ARHGAP45Q92619 1136 aa18.71■□□□□ 0.59
USP4-203ENST00000415188 ASAP1Q9ULH1 1129 aa18.71■□□□□ 0.59
USP4-203ENST00000415188 COL24A1Q17RW2 1714 aa18.7■□□□□ 0.58
USP4-203ENST00000415188 MAP3K5Q99683 1374 aa18.7■□□□□ 0.58
USP4-203ENST00000415188 MSL1Q68DK7 614 aa18.7■□□□□ 0.58
USP4-203ENST00000415188 NOB1Q9ULX3 412 aaKnown RBP18.7■□□□□ 0.58
USP4-203ENST00000415188 TAF1LQ8IZX4 1826 aa18.7■□□□□ 0.58
USP4-203ENST00000415188 RTL5Q5HYW3 569 aaPredicted RBP18.69■□□□□ 0.58
USP4-203ENST00000415188 SMIM5Q71RC9 77 aa18.69■□□□□ 0.58
USP4-203ENST00000415188 AMIGO3Q86WK7 504 aa18.69■□□□□ 0.58
USP4-203ENST00000415188 PDZRN3Q9UPQ7 1066 aa18.69■□□□□ 0.58
USP4-203ENST00000415188 LOC102724428A0A0B4J2F2 783 aa18.68■□□□□ 0.58
USP4-203ENST00000415188 HMOX1P09601 288 aa18.68■□□□□ 0.58
USP4-203ENST00000415188 SIK1P57059 783 aa18.68■□□□□ 0.58
USP4-203ENST00000415188 PLEKHO1Q53GL0 409 aaPredicted RBP18.68■□□□□ 0.58
USP4-203ENST00000415188 PHACTR3Q96KR7 559 aa18.68■□□□□ 0.58
USP4-203ENST00000415188 UTRNP46939 3433 aa18.68■□□□□ 0.58
USP4-203ENST00000415188 PLEKHG2Q9H7P9 1386 aa18.68■□□□□ 0.58
USP4-203ENST00000415188 C4BP0C0L5 1744 aa18.68■□□□□ 0.58
USP4-203ENST00000415188 ZNF530Q6P9A1 599 aaPredicted RBP18.67■□□□□ 0.58
USP4-203ENST00000415188 ITPRIPQ8IWB1 547 aa18.67■□□□□ 0.58
USP4-203ENST00000415188 ATG3Q9NT62 314 aa18.67■□□□□ 0.58
USP4-203ENST00000415188 DAXXQ9UER7 740 aaPredicted RBP18.67■□□□□ 0.58
USP4-203ENST00000415188 SULT6B1Q6IMI4 303 aa18.66■□□□□ 0.58
USP4-203ENST00000415188 LINC00116Q8NCU8 138 aa18.66■□□□□ 0.58
USP4-203ENST00000415188 AK7Q96M32 723 aa18.66■□□□□ 0.58
USP4-203ENST00000415188 ITPK1Q13572 414 aa18.65■□□□□ 0.58
USP4-203ENST00000415188 CFAP44Q96MT7 982 aa18.65■□□□□ 0.58
USP4-203ENST00000415188 KDM6AO15550 1401 aaPredicted RBP18.65■□□□□ 0.58
USP4-203ENST00000415188 VAMP4O75379 141 aa18.65■□□□□ 0.58
USP4-203ENST00000415188 PHF14O94880 888 aa18.65■□□□□ 0.58
USP4-203ENST00000415188 TMEM57Q8N5G2 664 aa18.65■□□□□ 0.58
USP4-203ENST00000415188 NLGN2Q8NFZ4 835 aa18.65■□□□□ 0.58
USP4-203ENST00000415188 ZBTB40Q9NUA8 1239 aa18.65■□□□□ 0.58
USP4-203ENST00000415188 ATP6V1AP38606 617 aa18.64■□□□□ 0.57
USP4-203ENST00000415188 AMOTQ4VCS5 1084 aa18.64■□□□□ 0.57
USP4-203ENST00000415188 FLAD1Q8NFF5 587 aa18.64■□□□□ 0.57
USP4-203ENST00000415188 DCAF5Q96JK2 942 aa18.64■□□□□ 0.57
USP4-203ENST00000415188 ERVV-2B6SEH9 535 aa18.63■□□□□ 0.57
USP4-203ENST00000415188 HSP90AB1P08238 724 aaKnown RBP18.63■□□□□ 0.57
USP4-203ENST00000415188 HMGB2P26583 209 aaKnown RBP18.63■□□□□ 0.57
USP4-203ENST00000415188 NBR1Q14596 966 aa18.63■□□□□ 0.57
USP4-203ENST00000415188 SMC5Q8IY18 1101 aa18.63■□□□□ 0.57
USP4-203ENST00000415188 MRPL50Q8N5N7 158 aaKnown RBP18.63■□□□□ 0.57
USP4-203ENST00000415188 KDRP35968 1356 aa18.63■□□□□ 0.57
USP4-203ENST00000415188 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.62■□□□□ 0.57
USP4-203ENST00000415188 UBR3Q6ZT12 1888 aa18.62■□□□□ 0.57
USP4-203ENST00000415188 SLC4A9Q96Q91 983 aa18.61■□□□□ 0.57
USP4-203ENST00000415188 UPF2Q9HAU5 1272 aaKnown RBP18.61■□□□□ 0.57
USP4-203ENST00000415188 MBIPQ9NS73 344 aa18.61■□□□□ 0.57
USP4-203ENST00000415188 LAS1LQ9Y4W2 734 aaKnown RBP18.61■□□□□ 0.57
USP4-203ENST00000415188 CABP4P57796 275 aa18.6■□□□□ 0.57
USP4-203ENST00000415188 GPR162Q16538 588 aa18.6■□□□□ 0.57
USP4-203ENST00000415188 C1orf141Q5JVX7 400 aa18.6■□□□□ 0.57
USP4-203ENST00000415188 RBM42Q9BTD8 480 aaKnown RBP18.6■□□□□ 0.57
USP4-203ENST00000415188 GNPATO15228 680 aa18.59■□□□□ 0.57
USP4-203ENST00000415188 API5Q9BZZ5 524 aaKnown RBP18.59■□□□□ 0.57
USP4-203ENST00000415188 ABCC4O15439 1325 aa18.59■□□□□ 0.57
USP4-203ENST00000415188 SSFA2P28290 1259 aa18.58■□□□□ 0.57
USP4-203ENST00000415188 TWISTNBQ3B726 338 aaPredicted RBP18.58■□□□□ 0.57
USP4-203ENST00000415188 BECN1Q14457 450 aa18.57■□□□□ 0.56
USP4-203ENST00000415188 THUMPD2Q9BTF0 503 aaKnown RBP18.57■□□□□ 0.56
USP4-203ENST00000415188 GOLGB1Q14789 3259 aaKnown RBP18.57■□□□□ 0.56
USP4-203ENST00000415188 NFATC2IPQ8NCF5 419 aa18.56■□□□□ 0.56
USP4-203ENST00000415188 PTCD1O75127 700 aaKnown RBP18.54■□□□□ 0.56
USP4-203ENST00000415188 YBX3P16989 372 aaKnown RBP eCLIP18.54■□□□□ 0.56
USP4-203ENST00000415188 DEKP35659 375 aaKnown RBP18.54■□□□□ 0.56
USP4-203ENST00000415188 TSPYL6Q8N831 410 aa18.54■□□□□ 0.56
USP4-203ENST00000415188 GCC1Q96CN9 775 aa18.54■□□□□ 0.56
USP4-203ENST00000415188 ZBTB7BO15156 539 aaPredicted RBP18.53■□□□□ 0.56
USP4-203ENST00000415188 NUCB1Q02818 461 aa18.53■□□□□ 0.56
USP4-203ENST00000415188 AKAP4Q5JQC9 854 aa18.53■□□□□ 0.56
USP4-203ENST00000415188 ZNF784Q8NCA9 323 aaPredicted RBP18.53■□□□□ 0.56
USP4-203ENST00000415188 TBC1D32Q96NH3 1257 aa18.53■□□□□ 0.56
USP4-203ENST00000415188 LGR6Q9HBX8 967 aa18.53■□□□□ 0.56
USP4-203ENST00000415188 CD2APQ9Y5K6 639 aa18.53■□□□□ 0.56
USP4-203ENST00000415188 CHL1O00533 1208 aa18.52■□□□□ 0.56
USP4-203ENST00000415188 RTCBQ9Y3I0 505 aaKnown RBP18.52■□□□□ 0.56
USP4-203ENST00000415188 CHD4Q14839 1912 aa18.52■□□□□ 0.55
USP4-203ENST00000415188 ZNF831Q5JPB2 1677 aa18.52■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms