RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 BRINP3Q76B58 766 aa6.12□□□□□ -1.43
SF3B1-202ENST00000409915 NOL8Q76FK4 1167 aaKnown RBP6.12□□□□□ -1.43
SF3B1-202ENST00000409915 GIPC2Q8TF65 315 aa6.12□□□□□ -1.43
SF3B1-202ENST00000409915 ORAI2Q96SN7 254 aa6.12□□□□□ -1.43
SF3B1-202ENST00000409915 SEPT9Q9UHD8 586 aaPredicted RBP6.12□□□□□ -1.43
SF3B1-202ENST00000409915 BRPF3Q9ULD4 1205 aa6.12□□□□□ -1.43
SF3B1-202ENST00000409915 ZC3H4Q9UPT8 1303 aaKnown RBP6.12□□□□□ -1.43
SF3B1-202ENST00000409915 FMN2Q9NZ56 1722 aa6.11□□□□□ -1.43
SF3B1-202ENST00000409915 ADGRB2O60241 1585 aa6.11□□□□□ -1.43
SF3B1-202ENST00000409915 ATG7O95352 703 aa6.11□□□□□ -1.43
SF3B1-202ENST00000409915 LMOD1P29536 600 aaPredicted RBP6.11□□□□□ -1.43
SF3B1-202ENST00000409915 PTGDRQ13258 359 aa6.11□□□□□ -1.43
SF3B1-202ENST00000409915 SF3A1Q15459 793 aaKnown RBP6.11□□□□□ -1.43
SF3B1-202ENST00000409915 TICAM2Q86XR7 235 aa6.11□□□□□ -1.43
SF3B1-202ENST00000409915 KIAA1468Q9P260 1216 aa6.11□□□□□ -1.43
SF3B1-202ENST00000409915 PHLPP1O60346 1717 aa6.11□□□□□ -1.43
SF3B1-202ENST00000409915 QRICH2Q9H0J4 1663 aa6.1□□□□□ -1.43
SF3B1-202ENST00000409915 COL16A1Q07092 1604 aaPredicted RBP6.1□□□□□ -1.43
SF3B1-202ENST00000409915 AHDC1Q5TGY3 1603 aaPredicted RBP6.1□□□□□ -1.43
SF3B1-202ENST00000409915 USP32Q8NFA0 1604 aa6.1□□□□□ -1.43
SF3B1-202ENST00000409915 GPRASP1Q5JY77 1395 aa6.1□□□□□ -1.43
SF3B1-202ENST00000409915 PRR36Q9H6K5 1346 aa6.1□□□□□ -1.43
SF3B1-202ENST00000409915 CENPJQ9HC77 1338 aaPredicted RBP6.1□□□□□ -1.43
SF3B1-202ENST00000409915 PALM3A6NDB9 673 aaPredicted RBP6.1□□□□□ -1.43
SF3B1-202ENST00000409915 SOCS7O14512 581 aa6.1□□□□□ -1.43
SF3B1-202ENST00000409915 XPCQ01831 940 aaPredicted RBP6.1□□□□□ -1.43
SF3B1-202ENST00000409915 CDCA8Q53HL2 280 aa6.1□□□□□ -1.43
SF3B1-202ENST00000409915 NAALADL2Q58DX5 795 aa6.1□□□□□ -1.43
SF3B1-202ENST00000409915 PPP2R2DQ66LE6 453 aa6.1□□□□□ -1.43
SF3B1-202ENST00000409915 WNT2BQ93097 391 aa6.1□□□□□ -1.43
SF3B1-202ENST00000409915 CARD11Q9BXL7 1154 aa6.1□□□□□ -1.43
SF3B1-202ENST00000409915 BCCIPQ9P287 314 aaKnown RBP eCLIP6.1□□□□□ -1.43
SF3B1-202ENST00000409915 RABGEF1Q9UJ41 708 aa6.1□□□□□ -1.43
SF3B1-202ENST00000409915 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.1□□□□□ -1.43
SF3B1-202ENST00000409915 NHSL1Q5SYE7 1610 aa6.1□□□□□ -1.43
SF3B1-202ENST00000409915 TULP4Q9NRJ4 1543 aa6.09□□□□□ -1.43
SF3B1-202ENST00000409915 ATP7BP35670 1465 aa6.09□□□□□ -1.43
SF3B1-202ENST00000409915 TRIM6-TRIM34B2RNG4 842 aa6.09□□□□□ -1.43
SF3B1-202ENST00000409915 SMAPO00193 183 aa6.09□□□□□ -1.43
SF3B1-202ENST00000409915 NOM1Q5C9Z4 860 aaKnown RBP6.09□□□□□ -1.43
SF3B1-202ENST00000409915 ESCO1Q5FWF5 840 aa6.09□□□□□ -1.43
SF3B1-202ENST00000409915 ZNF526Q8TF50 670 aaPredicted RBP6.09□□□□□ -1.43
SF3B1-202ENST00000409915 NBPF3Q9H094 633 aa6.09□□□□□ -1.43
SF3B1-202ENST00000409915 FAM217BQ9NTX9 383 aaPredicted RBP6.09□□□□□ -1.43
SF3B1-202ENST00000409915 EIF3AQ14152 1382 aaKnown RBP6.08□□□□□ -1.44
SF3B1-202ENST00000409915 WASLO00401 505 aaPredicted RBP6.08□□□□□ -1.44
SF3B1-202ENST00000409915 MARCH6O60337 910 aa6.08□□□□□ -1.44
SF3B1-202ENST00000409915 BCAMP50895 628 aa6.08□□□□□ -1.44
SF3B1-202ENST00000409915 DIEXFQ68CQ4 756 aaKnown RBP6.08□□□□□ -1.44
SF3B1-202ENST00000409915 GIMAP6Q6P9H5 292 aa6.08□□□□□ -1.44
SF3B1-202ENST00000409915 THSD4Q6ZMP0 1018 aa6.08□□□□□ -1.44
SF3B1-202ENST00000409915 PMFBP1Q8TBY8 1022 aa6.08□□□□□ -1.44
SF3B1-202ENST00000409915 PHOX2BQ99453 314 aa6.08□□□□□ -1.44
SF3B1-202ENST00000409915 CDK19Q9BWU1 502 aa6.08□□□□□ -1.44
SF3B1-202ENST00000409915 NPDC1Q9NQX5 325 aaPredicted RBP6.08□□□□□ -1.44
SF3B1-202ENST00000409915 RGPD8O14715 1765 aaPredicted RBP6.08□□□□□ -1.44
SF3B1-202ENST00000409915 ANKARQ7Z5J8 1434 aa6.08□□□□□ -1.44
SF3B1-202ENST00000409915 USP47Q96K76 1375 aa6.07□□□□□ -1.44
SF3B1-202ENST00000409915 MED1Q15648 1581 aaPredicted RBP6.07□□□□□ -1.44
SF3B1-202ENST00000409915 FOXO3O43524 673 aa6.07□□□□□ -1.44
SF3B1-202ENST00000409915 CLSTN1O94985 981 aa6.07□□□□□ -1.44
SF3B1-202ENST00000409915 TBC1D2Q9BYX2 928 aa6.07□□□□□ -1.44
SF3B1-202ENST00000409915 LIMD1Q9UGP4 676 aa6.07□□□□□ -1.44
SF3B1-202ENST00000409915 PXDNQ92626 1479 aa6.07□□□□□ -1.44
SF3B1-202ENST00000409915 LRP6O75581 1613 aa6.07□□□□□ -1.44
SF3B1-202ENST00000409915 NUDT16Q96DE0 195 aaKnown RBP6.06□□□□□ -1.44
SF3B1-202ENST00000409915 CDCA7LQ96GN5 454 aa6.06□□□□□ -1.44
SF3B1-202ENST00000409915 KIF1AQ12756 1690 aa6.06□□□□□ -1.44
SF3B1-202ENST00000409915 TOPAZ1Q8N9V7 1692 aa6.06□□□□□ -1.44
SF3B1-202ENST00000409915 PNPLA6Q8IY17 1366 aa6.06□□□□□ -1.44
SF3B1-202ENST00000409915 JCADQ9P266 1359 aa6.06□□□□□ -1.44
SF3B1-202ENST00000409915 SOS2Q07890 1332 aaPredicted RBP6.05□□□□□ -1.44
SF3B1-202ENST00000409915 NPHP3Q7Z494 1330 aa6.05□□□□□ -1.44
SF3B1-202ENST00000409915 ST20-MTHFSA0A0A6YYL1 179 aa6.05□□□□□ -1.44
SF3B1-202ENST00000409915 NUTM2BA6NNL0 878 aaPredicted RBP6.05□□□□□ -1.44
SF3B1-202ENST00000409915 NUTM2EB1AL46 878 aaPredicted RBP6.05□□□□□ -1.44
SF3B1-202ENST00000409915 VAMP1P23763 118 aa6.05□□□□□ -1.44
SF3B1-202ENST00000409915 WASHC4Q2M389 1173 aa6.05□□□□□ -1.44
SF3B1-202ENST00000409915 TMED8Q6PL24 325 aaPredicted RBP6.05□□□□□ -1.44
SF3B1-202ENST00000409915 PADI6Q6TGC4 694 aa6.05□□□□□ -1.44
SF3B1-202ENST00000409915 ZNF662Q6ZS27 426 aa6.05□□□□□ -1.44
SF3B1-202ENST00000409915 NUTM2AQ8IVF1 878 aaPredicted RBP6.05□□□□□ -1.44
SF3B1-202ENST00000409915 ZFRQ96KR1 1074 aaKnown RBP6.05□□□□□ -1.44
SF3B1-202ENST00000409915 TFIP11Q9UBB9 837 aaKnown RBP6.05□□□□□ -1.44
SF3B1-202ENST00000409915 SALL2Q9Y467 1007 aaPredicted RBP6.05□□□□□ -1.44
SF3B1-202ENST00000409915 SUPT16HQ9Y5B9 1047 aaKnown RBP6.05□□□□□ -1.44
SF3B1-202ENST00000409915 PPIP5K1Q6PFW1 1433 aa6.05□□□□□ -1.44
SF3B1-202ENST00000409915 DISP3Q9P2K9 1392 aa6.05□□□□□ -1.44
SF3B1-202ENST00000409915 SHPRHQ149N8 1683 aa6.04□□□□□ -1.44
SF3B1-202ENST00000409915 EVC2Q86UK5 1308 aa6.04□□□□□ -1.44
SF3B1-202ENST00000409915 PRSS12P56730 875 aa6.04□□□□□ -1.44
SF3B1-202ENST00000409915 DPH6Q7L8W6 267 aa6.04□□□□□ -1.44
SF3B1-202ENST00000409915 KRT28Q7Z3Y7 464 aa6.04□□□□□ -1.44
SF3B1-202ENST00000409915 NGDNQ8NEJ9 315 aaKnown RBP6.04□□□□□ -1.44
SF3B1-202ENST00000409915 ANKK1Q8NFD2 765 aa6.04□□□□□ -1.44
SF3B1-202ENST00000409915 TESK2Q96S53 571 aa6.04□□□□□ -1.44
SF3B1-202ENST00000409915 NDUFB9Q9Y6M9 179 aa6.04□□□□□ -1.44
SF3B1-202ENST00000409915 TNS3Q68CZ2 1445 aa6.04□□□□□ -1.44
SF3B1-202ENST00000409915 ITSN1Q15811 1721 aa6.04□□□□□ -1.44
SF3B1-202ENST00000409915 SBNO2Q9Y2G9 1366 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms