RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 XRCC6P12956 609 aaKnown RBP eCLIP12.79□□□□□ -0.36
CCDC40-204ENST00000397545 AEBP1Q8IUX7 1158 aa12.79□□□□□ -0.36
CCDC40-204ENST00000397545 CCDC83Q8IWF9 413 aa12.79□□□□□ -0.36
CCDC40-204ENST00000397545 TSPYL6Q8N831 410 aa12.79□□□□□ -0.36
CCDC40-204ENST00000397545 LTKP29376 864 aa12.79□□□□□ -0.36
CCDC40-204ENST00000397545 VPS37DQ86XT2 251 aa12.79□□□□□ -0.36
CCDC40-204ENST00000397545 BRPF1P55201 1214 aaPredicted RBP12.79□□□□□ -0.36
CCDC40-204ENST00000397545 TEX35Q5T0J7 233 aa12.79□□□□□ -0.36
CCDC40-204ENST00000397545 PDRG1Q9NUG6 133 aa12.79□□□□□ -0.36
CCDC40-204ENST00000397545 RBM27Q9P2N5 1060 aaKnown RBP12.79□□□□□ -0.36
CCDC40-204ENST00000397545 CASTP20810 708 aaKnown RBP12.79□□□□□ -0.36
CCDC40-204ENST00000397545 ANKRD20A12PQ8NF67 263 aa12.79□□□□□ -0.36
CCDC40-204ENST00000397545 SHPRHQ149N8 1683 aa12.78□□□□□ -0.36
CCDC40-204ENST00000397545 RRP9O43818 475 aaKnown RBP12.78□□□□□ -0.36
CCDC40-204ENST00000397545 RRP12Q5JTH9 1297 aaKnown RBP12.78□□□□□ -0.36
CCDC40-204ENST00000397545 STRN4Q9NRL3 753 aa12.78□□□□□ -0.36
CCDC40-204ENST00000397545 CD163L1Q9NR16 1453 aa12.78□□□□□ -0.36
CCDC40-204ENST00000397545 ARHGEF40Q8TER5 1519 aa12.78□□□□□ -0.36
CCDC40-204ENST00000397545 ERICH2A1L162 156 aa12.78□□□□□ -0.36
CCDC40-204ENST00000397545 HOOK1Q9UJC3 728 aaKnown RBP12.78□□□□□ -0.36
CCDC40-204ENST00000397545 G3V3G9 751 aa12.78□□□□□ -0.36
CCDC40-204ENST00000397545 MX1P20591 662 aa12.78□□□□□ -0.36
CCDC40-204ENST00000397545 DCAF8Q5TAQ9 597 aa12.78□□□□□ -0.36
CCDC40-204ENST00000397545 ZNF692Q9BU19 519 aaPredicted RBP12.78□□□□□ -0.36
CCDC40-204ENST00000397545 ARGLU1Q9NWB6 273 aaPredicted RBP12.78□□□□□ -0.36
CCDC40-204ENST00000397545 ACEP12821 1306 aa12.77□□□□□ -0.36
CCDC40-204ENST00000397545 PLEKHO1Q53GL0 409 aaPredicted RBP12.77□□□□□ -0.36
CCDC40-204ENST00000397545 OLFM4Q6UX06 510 aa12.77□□□□□ -0.36
CCDC40-204ENST00000397545 SPATA32Q96LK8 384 aa12.77□□□□□ -0.36
CCDC40-204ENST00000397545 USP25Q9UHP3 1055 aa12.77□□□□□ -0.36
CCDC40-204ENST00000397545 BAG4O95429 457 aaKnown RBP12.77□□□□□ -0.37
CCDC40-204ENST00000397545 PRDM10Q9NQV6 1147 aa12.77□□□□□ -0.37
CCDC40-204ENST00000397545 CCDC112Q8NEF3 446 aa12.77□□□□□ -0.37
CCDC40-204ENST00000397545 PRR36Q9H6K5 1346 aa12.77□□□□□ -0.37
CCDC40-204ENST00000397545 IL13P35225 146 aa12.76□□□□□ -0.37
CCDC40-204ENST00000397545 NUP62CLQ9H1M0 184 aa12.76□□□□□ -0.37
CCDC40-204ENST00000397545 SKIDA1Q1XH10 827 aa12.76□□□□□ -0.37
CCDC40-204ENST00000397545 PRPF40BQ6NWY9 871 aaKnown RBP12.76□□□□□ -0.37
CCDC40-204ENST00000397545 CCDC85AQ96PX6 553 aaPredicted RBP12.76□□□□□ -0.37
CCDC40-204ENST00000397545 MBIPQ9NS73 344 aa12.76□□□□□ -0.37
CCDC40-204ENST00000397545 FOXO3O43524 673 aa12.76□□□□□ -0.37
CCDC40-204ENST00000397545 AMOTL2Q9Y2J4 779 aa12.76□□□□□ -0.37
CCDC40-204ENST00000397545 ALDH1L2Q3SY69 923 aa12.76□□□□□ -0.37
CCDC40-204ENST00000397545 HSP90AB2PQ58FF8 381 aa12.76□□□□□ -0.37
CCDC40-204ENST00000397545 BMP2KLQ5H9B9 411 aa12.75□□□□□ -0.37
CCDC40-204ENST00000397545 ERC1Q8IUD2 1116 aa12.75□□□□□ -0.37
CCDC40-204ENST00000397545 HIP1O00291 1037 aa12.75□□□□□ -0.37
CCDC40-204ENST00000397545 KRT24Q2M2I5 525 aa12.75□□□□□ -0.37
CCDC40-204ENST00000397545 ROBO2Q9HCK4 1378 aa12.75□□□□□ -0.37
CCDC40-204ENST00000397545 IL16Q14005 1332 aa12.75□□□□□ -0.37
CCDC40-204ENST00000397545 BOLA2Q9H3K6 86 aa12.74□□□□□ -0.37
CCDC40-204ENST00000397545 PPFIA3O75145 1194 aa12.74□□□□□ -0.37
CCDC40-204ENST00000397545 ZC3H6P61129 1189 aaKnown RBP12.74□□□□□ -0.37
CCDC40-204ENST00000397545 FKBP4Q02790 459 aaKnown RBP eCLIP12.74□□□□□ -0.37
CCDC40-204ENST00000397545 USHBP1Q8N6Y0 703 aa12.74□□□□□ -0.37
CCDC40-204ENST00000397545 CEP89Q96ST8 783 aa12.74□□□□□ -0.37
CCDC40-204ENST00000397545 SPG7Q9UQ90 795 aa12.74□□□□□ -0.37
CCDC40-204ENST00000397545 SERPINC1P01008 464 aa12.74□□□□□ -0.37
CCDC40-204ENST00000397545 NAP1L1P55209 391 aaKnown RBP12.74□□□□□ -0.37
CCDC40-204ENST00000397545 CCDC70Q6NSX1 233 aa12.74□□□□□ -0.37
CCDC40-204ENST00000397545 C8orf58Q8NAV2 365 aa12.74□□□□□ -0.37
CCDC40-204ENST00000397545 LRRFIP2Q9Y608 721 aaKnown RBP12.74□□□□□ -0.37
CCDC40-204ENST00000397545 TTC21BQ7Z4L5 1316 aa12.74□□□□□ -0.37
CCDC40-204ENST00000397545 TMEM2Q9UHN6 1383 aa12.74□□□□□ -0.37
CCDC40-204ENST00000397545 CKAP2LQ8IYA6 745 aa12.74□□□□□ -0.37
CCDC40-204ENST00000397545 TFIP11Q9UBB9 837 aaKnown RBP12.74□□□□□ -0.37
CCDC40-204ENST00000397545 TAF7Q15545 349 aaPredicted RBP12.73□□□□□ -0.37
CCDC40-204ENST00000397545 EDC4Q6P2E9 1401 aaKnown RBP12.73□□□□□ -0.37
CCDC40-204ENST00000397545 EIF4A2Q14240 407 aaKnown RBP12.73□□□□□ -0.37
CCDC40-204ENST00000397545 HSP90B2PQ58FF3 399 aa12.73□□□□□ -0.37
CCDC40-204ENST00000397545 ZNF396Q96N95 335 aaPredicted RBP12.73□□□□□ -0.37
CCDC40-204ENST00000397545 PATL2C9JE40 543 aaKnown RBP12.73□□□□□ -0.37
CCDC40-204ENST00000397545 C16orf71Q8IYS4 520 aaPredicted RBP12.73□□□□□ -0.37
CCDC40-204ENST00000397545 VAMP4O75379 141 aa12.72□□□□□ -0.37
CCDC40-204ENST00000397545 CCDC8Q9H0W5 538 aaPredicted RBP12.72□□□□□ -0.37
CCDC40-204ENST00000397545 TMX4Q9H1E5 349 aaPredicted RBP12.72□□□□□ -0.37
CCDC40-204ENST00000397545 DNAJC5Q9H3Z4 198 aa12.72□□□□□ -0.37
CCDC40-204ENST00000397545 NLRP1Q9C000 1473 aa12.72□□□□□ -0.37
CCDC40-204ENST00000397545 CBX1P83916 185 aa12.72□□□□□ -0.37
CCDC40-204ENST00000397545 GUCY1B3Q02153 619 aa12.72□□□□□ -0.37
CCDC40-204ENST00000397545 ANKRD1Q15327 319 aa12.72□□□□□ -0.37
CCDC40-204ENST00000397545 MAP3K11Q16584 847 aa12.72□□□□□ -0.37
CCDC40-204ENST00000397545 KIF1BPQ96EK5 621 aa12.71□□□□□ -0.37
CCDC40-204ENST00000397545 USP32Q8NFA0 1604 aa12.71□□□□□ -0.37
CCDC40-204ENST00000397545 BTBD11A6QL63 1104 aa12.71□□□□□ -0.37
CCDC40-204ENST00000397545 RAB11FIP3O75154 756 aa12.71□□□□□ -0.37
CCDC40-204ENST00000397545 PNPLA6Q8IY17 1366 aa12.71□□□□□ -0.37
CCDC40-204ENST00000397545 COL3A1P02461 1466 aaPredicted RBP12.71□□□□□ -0.37
CCDC40-204ENST00000397545 CCDC47Q96A33 483 aaKnown RBP12.71□□□□□ -0.38
CCDC40-204ENST00000397545 ADAMTS2O95450 1211 aa12.71□□□□□ -0.38
CCDC40-204ENST00000397545 ANXA1P04083 346 aa12.71□□□□□ -0.38
CCDC40-204ENST00000397545 SAMD1Q6SPF0 538 aaPredicted RBP12.71□□□□□ -0.38
CCDC40-204ENST00000397545 MEIS3Q99687 375 aa12.71□□□□□ -0.38
CCDC40-204ENST00000397545 ZNF830Q96NB3 372 aaPredicted RBP12.7□□□□□ -0.38
CCDC40-204ENST00000397545 ATP7BP35670 1465 aa12.7□□□□□ -0.38
CCDC40-204ENST00000397545 ZBTB40Q9NUA8 1239 aa12.7□□□□□ -0.38
CCDC40-204ENST00000397545 TBC1D2BQ9UPU7 963 aa12.7□□□□□ -0.38
CCDC40-204ENST00000397545 GNAT3A8MTJ3 354 aa12.7□□□□□ -0.38
CCDC40-204ENST00000397545 GLRX3O76003 335 aaKnown RBP12.7□□□□□ -0.38
CCDC40-204ENST00000397545 PDCL2Q8N4E4 241 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms