RNA–Protein interactions for RNA: ENST00000368533.7

TPM3-212, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 3,131 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-212ENST00000368533 LRRC37A3O60309 1634 aa13.24□□□□□ -0.29
TPM3-212ENST00000368533 EP400Q96L91 3159 aa13.24□□□□□ -0.29
TPM3-212ENST00000368533 PTPRCP08575 1304 aa13.23□□□□□ -0.29
TPM3-212ENST00000368533 NCAPD2Q15021 1401 aa13.23□□□□□ -0.29
TPM3-212ENST00000368533 VIRMAQ69YN4 1812 aaKnown RBP13.23□□□□□ -0.29
TPM3-212ENST00000368533 INTS3Q68E01 1043 aaKnown RBP13.23□□□□□ -0.29
TPM3-212ENST00000368533 NHSL1Q5SYE7 1610 aa13.23□□□□□ -0.29
TPM3-212ENST00000368533 AAMPQ13685 434 aa13.23□□□□□ -0.29
TPM3-212ENST00000368533 CWF19L2Q2TBE0 894 aaKnown RBP13.23□□□□□ -0.29
TPM3-212ENST00000368533 C16orf71Q8IYS4 520 aaPredicted RBP13.22□□□□□ -0.29
TPM3-212ENST00000368533 ACSBG1Q96GR2 724 aa13.22□□□□□ -0.29
TPM3-212ENST00000368533 LMO7Q8WWI1 1683 aa13.22□□□□□ -0.29
TPM3-212ENST00000368533 MAP3K2Q9Y2U5 619 aa13.22□□□□□ -0.29
TPM3-212ENST00000368533 LRRFIP2Q9Y608 721 aaKnown RBP13.22□□□□□ -0.29
TPM3-212ENST00000368533 PCDH11XQ9BZA7 1347 aa13.22□□□□□ -0.29
TPM3-212ENST00000368533 PCDH11YQ9BZA8 1340 aa13.22□□□□□ -0.29
TPM3-212ENST00000368533 MFAP1P55081 439 aaKnown RBP13.21□□□□□ -0.29
TPM3-212ENST00000368533 EXOC6BQ9Y2D4 811 aa13.21□□□□□ -0.29
TPM3-212ENST00000368533 ABCA3Q99758 1704 aa13.21□□□□□ -0.29
TPM3-212ENST00000368533 NBPF7P0C2Y1 421 aaPredicted RBP13.21□□□□□ -0.3
TPM3-212ENST00000368533 HDAC1Q13547 482 aaPredicted RBP13.21□□□□□ -0.3
TPM3-212ENST00000368533 FAM182BQ5T319 152 aa13.21□□□□□ -0.3
TPM3-212ENST00000368533 RBM42Q9BTD8 480 aaKnown RBP13.21□□□□□ -0.3
TPM3-212ENST00000368533 OVOS2A0A0G2JMS6 1433 aa13.2□□□□□ -0.3
TPM3-212ENST00000368533 RRP9O43818 475 aaKnown RBP13.2□□□□□ -0.3
TPM3-212ENST00000368533 ASAP1Q9ULH1 1129 aa13.2□□□□□ -0.3
TPM3-212ENST00000368533 CEP85Q6P2H3 762 aa13.2□□□□□ -0.3
TPM3-212ENST00000368533 OTUD7AQ8TE49 926 aaPredicted RBP13.2□□□□□ -0.3
TPM3-212ENST00000368533 DBF4Q9UBU7 674 aaPredicted RBP13.2□□□□□ -0.3
TPM3-212ENST00000368533 A1BGP04217 495 aa13.19□□□□□ -0.3
TPM3-212ENST00000368533 PNMA6EA0A0J9YXQ4 647 aa13.19□□□□□ -0.3
TPM3-212ENST00000368533 TSHZ3Q63HK5 1081 aa13.19□□□□□ -0.3
TPM3-212ENST00000368533 COPS6Q7L5N1 327 aa13.19□□□□□ -0.3
TPM3-212ENST00000368533 XAGE3Q8WTP9 111 aa13.19□□□□□ -0.3
TPM3-212ENST00000368533 NGLY1Q96IV0 654 aa13.19□□□□□ -0.3
TPM3-212ENST00000368533 CCT4P50991 539 aaKnown RBP13.19□□□□□ -0.3
TPM3-212ENST00000368533 DNAAF4Q8WXU2 420 aa13.19□□□□□ -0.3
TPM3-212ENST00000368533 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.19□□□□□ -0.34e-7■■■□□ 17.2
TPM3-212ENST00000368533 XRCC6P12956 609 aaKnown RBP eCLIP13.18□□□□□ -0.39e-13■□□□□ 8.6
TPM3-212ENST00000368533 SRCIN1Q9C0H9 1055 aa13.18□□□□□ -0.3
TPM3-212ENST00000368533 PHLPP1O60346 1717 aa13.18□□□□□ -0.3
TPM3-212ENST00000368533 ATP5J2-PTCD1G3V325 749 aa13.18□□□□□ -0.3
TPM3-212ENST00000368533 RIC3Q7Z5B4 369 aa13.18□□□□□ -0.3
TPM3-212ENST00000368533 CHD1LQ86WJ1 897 aa13.18□□□□□ -0.3
TPM3-212ENST00000368533 SMC5Q8IY18 1101 aa13.18□□□□□ -0.3
TPM3-212ENST00000368533 FMNL2Q96PY5 1086 aa13.18□□□□□ -0.3
TPM3-212ENST00000368533 USP44Q9H0E7 712 aa13.18□□□□□ -0.3
TPM3-212ENST00000368533 BABAM1Q9NWV8 329 aa13.18□□□□□ -0.3
TPM3-212ENST00000368533 TMOD3Q9NYL9 352 aa13.18□□□□□ -0.3
TPM3-212ENST00000368533 HSP90AB1P08238 724 aaKnown RBP13.17□□□□□ -0.3
TPM3-212ENST00000368533 UBTFL1P0CB47 393 aaPredicted RBP13.17□□□□□ -0.3
TPM3-212ENST00000368533 PDIA6Q15084 440 aa13.17□□□□□ -0.3
TPM3-212ENST00000368533 FAM98CQ17RN3 349 aaKnown RBP13.17□□□□□ -0.3
TPM3-212ENST00000368533 EXOC5O00471 708 aa13.17□□□□□ -0.3
TPM3-212ENST00000368533 ADCY9O60503 1353 aa13.17□□□□□ -0.3
TPM3-212ENST00000368533 KDM3BQ7LBC6 1761 aa13.16□□□□□ -0.3
TPM3-212ENST00000368533 GNAI2P04899 355 aa13.16□□□□□ -0.3
TPM3-212ENST00000368533 SNRPA1P09661 255 aaKnown RBP13.16□□□□□ -0.3
TPM3-212ENST00000368533 PIGBQ92521 554 aa13.16□□□□□ -0.3
TPM3-212ENST00000368533 NUCB1Q02818 461 aa13.16□□□□□ -0.3
TPM3-212ENST00000368533 PRIM1P49642 420 aaKnown RBP13.15□□□□□ -0.3
TPM3-212ENST00000368533 KCNQ4P56696 695 aa13.15□□□□□ -0.3
TPM3-212ENST00000368533 RBM10P98175 930 aaKnown RBP13.15□□□□□ -0.3
TPM3-212ENST00000368533 ANKRD44Q8N8A2 993 aa13.15□□□□□ -0.3
TPM3-212ENST00000368533 MYD88Q99836 296 aa13.15□□□□□ -0.3
TPM3-212ENST00000368533 C9orf78Q9NZ63 289 aaPredicted RBP13.15□□□□□ -0.3
TPM3-212ENST00000368533 ZBTB3Q9H5J0 574 aa13.15□□□□□ -0.3
TPM3-212ENST00000368533 ATP10DQ9P241 1426 aa13.15□□□□□ -0.3
TPM3-212ENST00000368533 GOLGB1Q14789 3259 aaKnown RBP13.15□□□□□ -0.3
TPM3-212ENST00000368533 SCN11AQ9UI33 1791 aa13.15□□□□□ -0.3
TPM3-212ENST00000368533 BEND3Q5T5X7 828 aa13.15□□□□□ -0.31
TPM3-212ENST00000368533 TBC1D32Q96NH3 1257 aa13.15□□□□□ -0.31
TPM3-212ENST00000368533 CHMP4BQ9H444 224 aaKnown RBP13.15□□□□□ -0.31
TPM3-212ENST00000368533 IL1RAPL2Q9NP60 686 aa13.15□□□□□ -0.31
TPM3-212ENST00000368533 DDX21Q9NR30 783 aaKnown RBP eCLIP13.15□□□□□ -0.31
TPM3-212ENST00000368533 TTLL7Q6ZT98 887 aa13.14□□□□□ -0.31
TPM3-212ENST00000368533 ARID3AQ99856 593 aa13.14□□□□□ -0.31
TPM3-212ENST00000368533 C22orf23Q9BZE7 217 aa13.14□□□□□ -0.31
TPM3-212ENST00000368533 DDB1Q16531 1140 aa13.13□□□□□ -0.31
TPM3-212ENST00000368533 DNAJC10Q8IXB1 793 aa13.13□□□□□ -0.31
TPM3-212ENST00000368533 NBPF26B4DH59 902 aa13.13□□□□□ -0.31
TPM3-212ENST00000368533 NBPF14Q5TI25 921 aa13.13□□□□□ -0.31
TPM3-212ENST00000368533 NBPF10Q6P3W6 841 aaKnown RBP13.13□□□□□ -0.31
TPM3-212ENST00000368533 KSR2Q6VAB6 950 aa13.13□□□□□ -0.31
TPM3-212ENST00000368533 NBPF15Q8N660 670 aa13.13□□□□□ -0.31
TPM3-212ENST00000368533 TBC1D2Q9BYX2 928 aa13.13□□□□□ -0.31
TPM3-212ENST00000368533 COL16A1Q07092 1604 aaPredicted RBP13.13□□□□□ -0.31
TPM3-212ENST00000368533 HOXB7P09629 217 aa13.13□□□□□ -0.31
TPM3-212ENST00000368533 HSPA1LP34931 641 aa13.13□□□□□ -0.31
TPM3-212ENST00000368533 CLCN1P35523 988 aa13.13□□□□□ -0.31
TPM3-212ENST00000368533 C5P01031 1676 aa13.12□□□□□ -0.31
TPM3-212ENST00000368533 SRGAP3O43295 1099 aa13.12□□□□□ -0.31
TPM3-212ENST00000368533 L1TD1Q5T7N2 865 aaKnown RBP13.12□□□□□ -0.31
TPM3-212ENST00000368533 PPP1R42Q7Z4L9 355 aa13.12□□□□□ -0.31
TPM3-212ENST00000368533 KLHDC4Q8TBB5 520 aa13.12□□□□□ -0.31
TPM3-212ENST00000368533 HYPKQ9NX55 129 aa13.12□□□□□ -0.31
TPM3-212ENST00000368533 PA2G4Q9UQ80 394 aaKnown RBP13.12□□□□□ -0.31
TPM3-212ENST00000368533 KCNQ2O43526 872 aa13.12□□□□□ -0.31
TPM3-212ENST00000368533 GNAI3P08754 354 aa13.12□□□□□ -0.31
TPM3-212ENST00000368533 MEX3CQ5U5Q3 659 aaKnown RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms