RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 LGR6Q9HBX8 967 aa17.36■□□□□ 0.37
CPSF7-201ENST00000340437 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.36■□□□□ 0.37
CPSF7-201ENST00000340437 AK2P54819 239 aa17.36■□□□□ 0.37
CPSF7-201ENST00000340437 FERMT3Q86UX7 667 aa17.36■□□□□ 0.37
CPSF7-201ENST00000340437 TSC1Q92574 1164 aa17.36■□□□□ 0.37
CPSF7-201ENST00000340437 FAM177BA6PVY3 158 aa17.35■□□□□ 0.37
CPSF7-201ENST00000340437 PRPF40BQ6NWY9 871 aaKnown RBP17.35■□□□□ 0.37
CPSF7-201ENST00000340437 WDR33Q9C0J8 1336 aaKnown RBP17.35■□□□□ 0.37
CPSF7-201ENST00000340437 CLTCQ00610 1675 aaKnown RBP17.35■□□□□ 0.37
CPSF7-201ENST00000340437 NECAB1Q8N987 351 aa17.35■□□□□ 0.37
CPSF7-201ENST00000340437 TTC12Q9H892 705 aaPredicted RBP17.35■□□□□ 0.37
CPSF7-201ENST00000340437 C9orf78Q9NZ63 289 aaPredicted RBP17.35■□□□□ 0.37
CPSF7-201ENST00000340437 SOS1Q07889 1333 aaPredicted RBP17.35■□□□□ 0.37
CPSF7-201ENST00000340437 MPRIPQ6WCQ1 1025 aa17.34■□□□□ 0.37
CPSF7-201ENST00000340437 PLEKHG3A1L390 1219 aa17.34■□□□□ 0.37
CPSF7-201ENST00000340437 GIMAP6Q6P9H5 292 aa17.34■□□□□ 0.37
CPSF7-201ENST00000340437 JAKMIP1Q96N16 626 aaKnown RBP17.34■□□□□ 0.37
CPSF7-201ENST00000340437 BCL11BQ9C0K0 894 aaPredicted RBP17.34■□□□□ 0.37
CPSF7-201ENST00000340437 SIL1Q9H173 461 aa17.34■□□□□ 0.37
CPSF7-201ENST00000340437 IBTKQ9P2D0 1353 aaPredicted RBP17.34■□□□□ 0.37
CPSF7-201ENST00000340437 CNTROBQ8N137 903 aa17.34■□□□□ 0.37
CPSF7-201ENST00000340437 SPC24Q8NBT2 197 aa17.33■□□□□ 0.37
CPSF7-201ENST00000340437 SNX14Q9Y5W7 946 aa17.33■□□□□ 0.37
CPSF7-201ENST00000340437 TEFQ10587 303 aa17.33■□□□□ 0.36
CPSF7-201ENST00000340437 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.33■□□□□ 0.361e-7■□□□□ 8.3
CPSF7-201ENST00000340437 FLT4P35916 1363 aa17.33■□□□□ 0.36
CPSF7-201ENST00000340437 CUL4AQ13619 759 aa17.32■□□□□ 0.36
CPSF7-201ENST00000340437 USP6P35125 1406 aa17.32■□□□□ 0.36
CPSF7-201ENST00000340437 HOXC9P31274 260 aa17.32■□□□□ 0.36
CPSF7-201ENST00000340437 FAM173BQ6P4H8 233 aa17.32■□□□□ 0.36
CPSF7-201ENST00000340437 TNRQ92752 1358 aa17.32■□□□□ 0.36
CPSF7-201ENST00000340437 LARGE1O95461 756 aa17.32■□□□□ 0.36
CPSF7-201ENST00000340437 SYT1P21579 422 aa17.32■□□□□ 0.36
CPSF7-201ENST00000340437 RICTORQ6R327 1708 aa17.31■□□□□ 0.36
CPSF7-201ENST00000340437 LRRC59Q96AG4 307 aaKnown RBP17.31■□□□□ 0.36
CPSF7-201ENST00000340437 PDLIM2Q96JY6 352 aa17.31■□□□□ 0.36
CPSF7-201ENST00000340437 STX6O43752 255 aa17.31■□□□□ 0.36
CPSF7-201ENST00000340437 IFIT2P09913 472 aaKnown RBP17.31■□□□□ 0.36
CPSF7-201ENST00000340437 DNM1Q05193 864 aaKnown RBP17.31■□□□□ 0.36
CPSF7-201ENST00000340437 STK3Q13188 491 aa17.31■□□□□ 0.36
CPSF7-201ENST00000340437 HSPA4P34932 840 aa17.31■□□□□ 0.36
CPSF7-201ENST00000340437 KIAA2012Q0VF49 1180 aa17.31■□□□□ 0.36
CPSF7-201ENST00000340437 CAMK4Q16566 473 aa17.31■□□□□ 0.36
CPSF7-201ENST00000340437 CCDC8Q9H0W5 538 aaPredicted RBP17.31■□□□□ 0.36
CPSF7-201ENST00000340437 PHF14O94880 888 aa17.3■□□□□ 0.36
CPSF7-201ENST00000340437 ANAPC15P60006 121 aa17.3■□□□□ 0.36
CPSF7-201ENST00000340437 KIF1BPQ96EK5 621 aa17.3■□□□□ 0.36
CPSF7-201ENST00000340437 ADCY5O95622 1261 aa17.3■□□□□ 0.36
CPSF7-201ENST00000340437 PTH1RQ03431 593 aa17.3■□□□□ 0.36
CPSF7-201ENST00000340437 RUFY3Q7L099 469 aa17.3■□□□□ 0.36
CPSF7-201ENST00000340437 SALL3Q9BXA9 1300 aa17.3■□□□□ 0.36
CPSF7-201ENST00000340437 GJB2P29033 226 aa17.29■□□□□ 0.36
CPSF7-201ENST00000340437 CWF19L2Q2TBE0 894 aaKnown RBP17.29■□□□□ 0.36
CPSF7-201ENST00000340437 ADCK5Q3MIX3 580 aa17.29■□□□□ 0.36
CPSF7-201ENST00000340437 DNAAF4Q8WXU2 420 aa17.29■□□□□ 0.36
CPSF7-201ENST00000340437 INTS4Q96HW7 963 aaKnown RBP17.29■□□□□ 0.36
CPSF7-201ENST00000340437 ZNF330Q9Y3S2 320 aaPredicted RBP17.29■□□□□ 0.36
CPSF7-201ENST00000340437 SGSM2O43147 1006 aa17.29■□□□□ 0.36
CPSF7-201ENST00000340437 FOSBP53539 338 aa17.29■□□□□ 0.36
CPSF7-201ENST00000340437 CLASRPQ8N2M8 674 aaKnown RBP17.29■□□□□ 0.36
CPSF7-201ENST00000340437 LIMCH1Q9UPQ0 1083 aa17.29■□□□□ 0.36
CPSF7-201ENST00000340437 SETD1BQ9UPS6 1966 aaKnown RBP17.29■□□□□ 0.36
CPSF7-201ENST00000340437 ZSCAN22P10073 491 aaPredicted RBP17.29■□□□□ 0.36
CPSF7-201ENST00000340437 PDRG1Q9NUG6 133 aa17.29■□□□□ 0.36
CPSF7-201ENST00000340437 PPP6R1Q9UPN7 881 aa17.29■□□□□ 0.36
CPSF7-201ENST00000340437 RIMS1Q86UR5 1692 aaKnown RBP17.29■□□□□ 0.36
CPSF7-201ENST00000340437 TMEM2Q9UHN6 1383 aa17.29■□□□□ 0.36
CPSF7-201ENST00000340437 DLC1Q96QB1 1528 aa17.28■□□□□ 0.36
CPSF7-201ENST00000340437 AACSQ86V21 672 aa17.28■□□□□ 0.36
CPSF7-201ENST00000340437 SSH3Q8TE77 659 aa17.28■□□□□ 0.36
CPSF7-201ENST00000340437 SBNO1A3KN83 1393 aa17.28■□□□□ 0.36
CPSF7-201ENST00000340437 BTBD11A6QL63 1104 aa17.28■□□□□ 0.36
CPSF7-201ENST00000340437 PDCL3Q9H2J4 239 aa17.28■□□□□ 0.36
CPSF7-201ENST00000340437 STAP2Q9UGK3 403 aa17.28■□□□□ 0.36
CPSF7-201ENST00000340437 IGSF1Q8N6C5 1336 aa17.28■□□□□ 0.36
CPSF7-201ENST00000340437 PI4K2BQ8TCG2 481 aa17.27■□□□□ 0.36
CPSF7-201ENST00000340437 PRAMEF22A3QJZ6 481 aa17.27■□□□□ 0.36
CPSF7-201ENST00000340437 ZNF530Q6P9A1 599 aaPredicted RBP17.27■□□□□ 0.36
CPSF7-201ENST00000340437 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.27■□□□□ 0.36
CPSF7-201ENST00000340437 ARHGEF10O15013 1369 aa17.27■□□□□ 0.36
CPSF7-201ENST00000340437 PPFIA3O75145 1194 aa17.27■□□□□ 0.35
CPSF7-201ENST00000340437 KLHDC4Q8TBB5 520 aa17.27■□□□□ 0.35
CPSF7-201ENST00000340437 ZNF500O60304 480 aaPredicted RBP17.26■□□□□ 0.35
CPSF7-201ENST00000340437 CSPP1Q1MSJ5 1256 aa17.26■□□□□ 0.35
CPSF7-201ENST00000340437 BOLA2Q9H3K6 86 aa17.26■□□□□ 0.35
CPSF7-201ENST00000340437 TFIP11Q9UBB9 837 aaKnown RBP17.26■□□□□ 0.35
CPSF7-201ENST00000340437 OVOS2A0A0J9YW53 1432 aa17.26■□□□□ 0.35
CPSF7-201ENST00000340437 OVOS2Q6IE36 1432 aa17.26■□□□□ 0.35
CPSF7-201ENST00000340437 HS1BP3Q53T59 392 aa17.26■□□□□ 0.35
CPSF7-201ENST00000340437 CCDC183Q5T5S1 534 aa17.26■□□□□ 0.35
CPSF7-201ENST00000340437 MAP3K2Q9Y2U5 619 aa17.26■□□□□ 0.35
CPSF7-201ENST00000340437 LSG1Q9H089 658 aaKnown RBP17.26■□□□□ 0.35
CPSF7-201ENST00000340437 CEP170BQ9Y4F5 1589 aaPredicted RBP17.26■□□□□ 0.35
CPSF7-201ENST00000340437 RAB11FIP3O75154 756 aa17.25■□□□□ 0.35
CPSF7-201ENST00000340437 NBPF6Q5VWK0 638 aa17.25■□□□□ 0.35
CPSF7-201ENST00000340437 PKNOX2Q96KN3 472 aa17.25■□□□□ 0.35
CPSF7-201ENST00000340437 NBPF4Q96M43 638 aa17.25■□□□□ 0.35
CPSF7-201ENST00000340437 MAP3K5Q99683 1374 aa17.25■□□□□ 0.35
CPSF7-201ENST00000340437 RAD50Q92878 1312 aa17.25■□□□□ 0.35
CPSF7-201ENST00000340437 FAM227BQ96M60 508 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms