RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 SLFN5Q08AF3 891 aa15.4■□□□□ 0.06
SPTLC1-202ENST00000337841 R3HDM1Q15032 1099 aaKnown RBP15.4■□□□□ 0.06
SPTLC1-202ENST00000337841 ZNF827Q17R98 1081 aa15.4■□□□□ 0.06
SPTLC1-202ENST00000337841 TRAPPC3LQ5T215 181 aa15.4■□□□□ 0.06
SPTLC1-202ENST00000337841 DUSP27Q5VZP5 1158 aa15.4■□□□□ 0.06
SPTLC1-202ENST00000337841 INTS5Q6P9B9 1019 aaKnown RBP15.4■□□□□ 0.06
SPTLC1-202ENST00000337841 ANO8Q9HCE9 1232 aaPredicted RBP15.4■□□□□ 0.06
SPTLC1-202ENST00000337841 SOS1Q07889 1333 aaPredicted RBP15.4■□□□□ 0.06
SPTLC1-202ENST00000337841 KCPQ6ZWJ8 1503 aa15.39■□□□□ 0.05
SPTLC1-202ENST00000337841 ELL2O00472 640 aaPredicted RBP15.39■□□□□ 0.05
SPTLC1-202ENST00000337841 A1BGP04217 495 aa15.39■□□□□ 0.05
SPTLC1-202ENST00000337841 CANXP27824 592 aaKnown RBP15.39■□□□□ 0.05
SPTLC1-202ENST00000337841 C8orf58Q8NAV2 365 aa15.39■□□□□ 0.05
SPTLC1-202ENST00000337841 SPINK5Q9NQ38 1064 aaPredicted RBP15.39■□□□□ 0.05
SPTLC1-202ENST00000337841 SSFA2P28290 1259 aa15.38■□□□□ 0.05
SPTLC1-202ENST00000337841 KRT24Q2M2I5 525 aa15.38■□□□□ 0.05
SPTLC1-202ENST00000337841 RGPD3A6NKT7 1758 aaPredicted RBP15.38■□□□□ 0.05
SPTLC1-202ENST00000337841 RGPD4Q7Z3J3 1758 aa15.38■□□□□ 0.05
SPTLC1-202ENST00000337841 FANCIQ9NVI1 1328 aa15.38■□□□□ 0.05
SPTLC1-202ENST00000337841 A0A087WZG4 1122 aa15.37■□□□□ 0.05
SPTLC1-202ENST00000337841 PSDA5PKW4 1024 aaPredicted RBP15.37■□□□□ 0.05
SPTLC1-202ENST00000337841 EXOSC9Q06265 439 aaKnown RBP15.37■□□□□ 0.05
SPTLC1-202ENST00000337841 CDCA7LQ96GN5 454 aa15.37■□□□□ 0.05
SPTLC1-202ENST00000337841 ZBED9Q6R2W3 1325 aa15.37■□□□□ 0.05
SPTLC1-202ENST00000337841 LY75O60449 1722 aa15.37■□□□□ 0.05
SPTLC1-202ENST00000337841 SIPA1L3O60292 1781 aaPredicted RBP15.36■□□□□ 0.05
SPTLC1-202ENST00000337841 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.36■□□□□ 0.05
SPTLC1-202ENST00000337841 PHF14O94880 888 aa15.36■□□□□ 0.05
SPTLC1-202ENST00000337841 RFC4P35249 363 aa15.36■□□□□ 0.05
SPTLC1-202ENST00000337841 IL6STP40189 918 aaPredicted RBP15.36■□□□□ 0.05
SPTLC1-202ENST00000337841 TWISTNBQ3B726 338 aaPredicted RBP15.36■□□□□ 0.05
SPTLC1-202ENST00000337841 HDGFL1Q5TGJ6 251 aa15.36■□□□□ 0.05
SPTLC1-202ENST00000337841 ZBTB1Q9Y2K1 713 aa15.36■□□□□ 0.05
SPTLC1-202ENST00000337841 ERBB4Q15303 1308 aa15.36■□□□□ 0.05
SPTLC1-202ENST00000337841 CCDC30Q5VVM6 783 aa15.35■□□□□ 0.05
SPTLC1-202ENST00000337841 COL23A1Q86Y22 540 aaPredicted RBP15.35■□□□□ 0.05
SPTLC1-202ENST00000337841 TRMT2AQ8IZ69 625 aaKnown RBP15.35■□□□□ 0.05
SPTLC1-202ENST00000337841 TSPYL6Q8N831 410 aa15.35■□□□□ 0.05
SPTLC1-202ENST00000337841 SLC16A10Q8TF71 515 aa15.35■□□□□ 0.05
SPTLC1-202ENST00000337841 NECTIN2Q92692 538 aa15.35■□□□□ 0.05
SPTLC1-202ENST00000337841 ARHGEF1Q92888 912 aaKnown RBP15.35■□□□□ 0.05
SPTLC1-202ENST00000337841 ARXQ96QS3 562 aa15.35■□□□□ 0.05
SPTLC1-202ENST00000337841 EIF5P55010 431 aaKnown RBP15.34■□□□□ 0.05
SPTLC1-202ENST00000337841 DBF4Q9UBU7 674 aaPredicted RBP15.34■□□□□ 0.05
SPTLC1-202ENST00000337841 ZNF330Q9Y3S2 320 aaPredicted RBP15.34■□□□□ 0.05
SPTLC1-202ENST00000337841 PAPPAQ13219 1627 aa15.34■□□□□ 0.05
SPTLC1-202ENST00000337841 PNPLA7Q6ZV29 1317 aa15.34■□□□□ 0.05
SPTLC1-202ENST00000337841 VIRMAQ69YN4 1812 aaKnown RBP15.33■□□□□ 0.05
SPTLC1-202ENST00000337841 ZNF831Q5JPB2 1677 aa15.33■□□□□ 0.04
SPTLC1-202ENST00000337841 NBPF26B4DH59 902 aa15.33■□□□□ 0.04
SPTLC1-202ENST00000337841 ZPR1O75312 459 aa15.33■□□□□ 0.04
SPTLC1-202ENST00000337841 VAMP4O75379 141 aa15.33■□□□□ 0.04
SPTLC1-202ENST00000337841 MYL6BP14649 208 aa15.33■□□□□ 0.04
SPTLC1-202ENST00000337841 NBPF10Q6P3W6 841 aaKnown RBP15.33■□□□□ 0.04
SPTLC1-202ENST00000337841 SMIM5Q71RC9 77 aa15.33■□□□□ 0.04
SPTLC1-202ENST00000337841 NBPF15Q8N660 670 aa15.33■□□□□ 0.04
SPTLC1-202ENST00000337841 STK31Q9BXU1 1019 aa15.33■□□□□ 0.04
SPTLC1-202ENST00000337841 DDX21Q9NR30 783 aaKnown RBP eCLIP15.33■□□□□ 0.04
SPTLC1-202ENST00000337841 RREB1Q92766 1687 aa15.32■□□□□ 0.04
SPTLC1-202ENST00000337841 PIP4K2AP48426 406 aaPredicted RBP15.32■□□□□ 0.04
SPTLC1-202ENST00000337841 YTHDC1Q96MU7 727 aaKnown RBP15.32■□□□□ 0.04
SPTLC1-202ENST00000337841 HYPKQ9NX55 129 aa15.32■□□□□ 0.04
SPTLC1-202ENST00000337841 AMIGO3Q86WK7 504 aa15.31■□□□□ 0.04
SPTLC1-202ENST00000337841 KDM3BQ7LBC6 1761 aa15.31■□□□□ 0.04
SPTLC1-202ENST00000337841 UBR2Q8IWV8 1755 aa15.31■□□□□ 0.04
SPTLC1-202ENST00000337841 C4BP0C0L5 1744 aa15.3■□□□□ 0.04
SPTLC1-202ENST00000337841 CT47B1P0C2W7 299 aaPredicted RBP15.3■□□□□ 0.04
SPTLC1-202ENST00000337841 PDIA6Q15084 440 aa15.3■□□□□ 0.04
SPTLC1-202ENST00000337841 DZIP3Q86Y13 1208 aaKnown RBP15.3■□□□□ 0.04
SPTLC1-202ENST00000337841 NLGN1Q8N2Q7 840 aa15.3■□□□□ 0.04
SPTLC1-202ENST00000337841 ZNF428Q96B54 188 aa15.3■□□□□ 0.04
SPTLC1-202ENST00000337841 CHPF2Q9P2E5 772 aa15.3■□□□□ 0.04
SPTLC1-202ENST00000337841 NARFQ9UHQ1 456 aa15.3■□□□□ 0.04
SPTLC1-202ENST00000337841 TBC1D2BQ9UPU7 963 aa15.3■□□□□ 0.04
SPTLC1-202ENST00000337841 NUP188Q5SRE5 1749 aa15.29■□□□□ 0.04
SPTLC1-202ENST00000337841 PDGFDQ9GZP0 370 aaPredicted RBP15.29■□□□□ 0.04
SPTLC1-202ENST00000337841 MTFR1LQ9H019 292 aa15.29■□□□□ 0.04
SPTLC1-202ENST00000337841 C5P01031 1676 aa15.28■□□□□ 0.04
SPTLC1-202ENST00000337841 COL15A1P39059 1388 aa15.28■□□□□ 0.04
SPTLC1-202ENST00000337841 ANXA1P04083 346 aa15.28■□□□□ 0.04
SPTLC1-202ENST00000337841 SLC4A2P04920 1241 aa15.28■□□□□ 0.04
SPTLC1-202ENST00000337841 AIMP1Q12904 312 aaKnown RBP15.28■□□□□ 0.04
SPTLC1-202ENST00000337841 KIF6Q6ZMV9 814 aa15.28■□□□□ 0.04
SPTLC1-202ENST00000337841 COPS6Q7L5N1 327 aa15.28■□□□□ 0.04
SPTLC1-202ENST00000337841 TJP1Q07157 1748 aa15.27■□□□□ 0.04
SPTLC1-202ENST00000337841 TCERG1O14776 1098 aaKnown RBP15.27■□□□□ 0.04
SPTLC1-202ENST00000337841 ZBTB7AO95365 584 aa15.27■□□□□ 0.04
SPTLC1-202ENST00000337841 PROSER3Q2NL68 480 aa15.27■□□□□ 0.04
SPTLC1-202ENST00000337841 USPL1Q5W0Q7 1092 aa15.27■□□□□ 0.04
SPTLC1-202ENST00000337841 XAGE3Q8WTP9 111 aa15.27■□□□□ 0.04
SPTLC1-202ENST00000337841 SPON1Q9HCB6 807 aa15.27■□□□□ 0.04
SPTLC1-202ENST00000337841 SRP68Q9UHB9 627 aaKnown RBP15.27■□□□□ 0.04
SPTLC1-202ENST00000337841 ATF5Q9Y2D1 282 aaPredicted RBP15.27■□□□□ 0.04
SPTLC1-202ENST00000337841 USP42Q9H9J4 1324 aaKnown RBP15.26■□□□□ 0.03
SPTLC1-202ENST00000337841 CICQ96RK0 1608 aaPredicted RBP15.26■□□□□ 0.03
SPTLC1-202ENST00000337841 ERVV-1B6SEH8 477 aa15.26■□□□□ 0.03
SPTLC1-202ENST00000337841 CLEC4GQ6UXB4 293 aa15.26■□□□□ 0.03
SPTLC1-202ENST00000337841 ZNF652Q9Y2D9 606 aa15.26■□□□□ 0.03
SPTLC1-202ENST00000337841 RGL2O15211 777 aa15.25■□□□□ 0.03
SPTLC1-202ENST00000337841 CAMTA2O94983 1202 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms