RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 PDCL2Q8N4E4 241 aa16.5■□□□□ 0.23
SYNE3-201ENST00000334258 PTPRCP08575 1304 aa16.49■□□□□ 0.23
SYNE3-201ENST00000334258 GNAI2P04899 355 aa16.49■□□□□ 0.23
SYNE3-201ENST00000334258 NLRP6P59044 892 aa16.49■□□□□ 0.23
SYNE3-201ENST00000334258 GIMAP6Q6P9H5 292 aa16.49■□□□□ 0.23
SYNE3-201ENST00000334258 DHX37Q8IY37 1157 aaKnown RBP16.49■□□□□ 0.23
SYNE3-201ENST00000334258 OSBPL3Q9H4L5 887 aa16.49■□□□□ 0.23
SYNE3-201ENST00000334258 ESCO1Q5FWF5 840 aa16.49■□□□□ 0.23
SYNE3-201ENST00000334258 BCL2L12Q9HB09 334 aa16.49■□□□□ 0.23
SYNE3-201ENST00000334258 KDM4AO75164 1064 aa16.48■□□□□ 0.23
SYNE3-201ENST00000334258 LETM1O95202 739 aaPredicted RBP16.48■□□□□ 0.23
SYNE3-201ENST00000334258 DIAPH3Q9NSV4 1193 aa16.48■□□□□ 0.23
SYNE3-201ENST00000334258 TTC21BQ7Z4L5 1316 aa16.48■□□□□ 0.23
SYNE3-201ENST00000334258 CPS1P31327 1500 aa16.48■□□□□ 0.23
SYNE3-201ENST00000334258 UBR1Q8IWV7 1749 aa16.48■□□□□ 0.23
SYNE3-201ENST00000334258 PLEKHG1Q9ULL1 1385 aa16.48■□□□□ 0.23
SYNE3-201ENST00000334258 G2E3Q7L622 706 aa16.48■□□□□ 0.23
SYNE3-201ENST00000334258 C3P01024 1663 aa16.47■□□□□ 0.23
SYNE3-201ENST00000334258 DTNBO60941 627 aa16.47■□□□□ 0.23
SYNE3-201ENST00000334258 FKBP5Q13451 457 aaPredicted RBP16.47■□□□□ 0.23
SYNE3-201ENST00000334258 ATP2B3Q16720 1220 aa16.47■□□□□ 0.23
SYNE3-201ENST00000334258 TBX22Q9Y458 520 aa16.47■□□□□ 0.23
SYNE3-201ENST00000334258 MAP4K4O95819 1239 aaPredicted RBP16.47■□□□□ 0.23
SYNE3-201ENST00000334258 DDX17Q92841 729 aaKnown RBP16.47■□□□□ 0.23
SYNE3-201ENST00000334258 CHMP3Q9Y3E7 222 aa16.47■□□□□ 0.23
SYNE3-201ENST00000334258 CHL1O00533 1208 aa16.46■□□□□ 0.23
SYNE3-201ENST00000334258 UBE2HP62256 183 aa16.46■□□□□ 0.23
SYNE3-201ENST00000334258 UTP14CQ5TAP6 766 aaKnown RBP16.46■□□□□ 0.23
SYNE3-201ENST00000334258 FOXO3O43524 673 aa16.46■□□□□ 0.23
SYNE3-201ENST00000334258 CCT4P50991 539 aaKnown RBP16.46■□□□□ 0.23
SYNE3-201ENST00000334258 ABTB2Q8N961 1025 aa16.46■□□□□ 0.23
SYNE3-201ENST00000334258 IL1RAPL2Q9NP60 686 aa16.46■□□□□ 0.23
SYNE3-201ENST00000334258 SMC3Q9UQE7 1217 aa16.46■□□□□ 0.23
SYNE3-201ENST00000334258 ZSCAN22P10073 491 aaPredicted RBP16.45■□□□□ 0.22
SYNE3-201ENST00000334258 UNC5CLQ8IV45 518 aa16.45■□□□□ 0.22
SYNE3-201ENST00000334258 NECTIN2Q92692 538 aa16.45■□□□□ 0.22
SYNE3-201ENST00000334258 IGSF3O75054 1194 aa16.45■□□□□ 0.22
SYNE3-201ENST00000334258 ZFP91Q96JP5 570 aaPredicted RBP16.45■□□□□ 0.22
SYNE3-201ENST00000334258 ORAI2Q96SN7 254 aa16.45■□□□□ 0.22
SYNE3-201ENST00000334258 ATP6V1DQ9Y5K8 247 aa16.45■□□□□ 0.22
SYNE3-201ENST00000334258 KNDC1Q76NI1 1749 aa16.45■□□□□ 0.22
SYNE3-201ENST00000334258 FER1L4A9Z1Z3 1794 aa16.45■□□□□ 0.22
SYNE3-201ENST00000334258 GOLGA6L6A8MZA4 724 aa16.44■□□□□ 0.22
SYNE3-201ENST00000334258 RIOK3O14730 519 aaKnown RBP16.44■□□□□ 0.22
SYNE3-201ENST00000334258 ZBTB22O15209 634 aa16.44■□□□□ 0.22
SYNE3-201ENST00000334258 STX6O43752 255 aa16.44■□□□□ 0.22
SYNE3-201ENST00000334258 GTF2F1P35269 517 aaKnown RBP eCLIP16.44■□□□□ 0.22
SYNE3-201ENST00000334258 USHBP1Q8N6Y0 703 aa16.44■□□□□ 0.22
SYNE3-201ENST00000334258 STK31Q9BXU1 1019 aa16.44■□□□□ 0.22
SYNE3-201ENST00000334258 TSPYL4Q9UJ04 414 aa16.44■□□□□ 0.22
SYNE3-201ENST00000334258 PYCARDQ9ULZ3 195 aa16.44■□□□□ 0.22
SYNE3-201ENST00000334258 DRC7Q8IY82 874 aa16.44■□□□□ 0.22
SYNE3-201ENST00000334258 SPTLC3Q9NUV7 552 aa16.44■□□□□ 0.22
SYNE3-201ENST00000334258 PNMA6EA0A0J9YXQ4 647 aa16.43■□□□□ 0.22
SYNE3-201ENST00000334258 SYT1P21579 422 aa16.43■□□□□ 0.22
SYNE3-201ENST00000334258 U2AF2P26368 475 aaKnown RBP eCLIP16.43■□□□□ 0.223e-6■■■■□ 21.1
SYNE3-201ENST00000334258 AMPHP49418 695 aa16.43■□□□□ 0.22
SYNE3-201ENST00000334258 NUTM1Q86Y26 1132 aa16.43■□□□□ 0.22
SYNE3-201ENST00000334258 RTF1Q92541 710 aaKnown RBP16.43■□□□□ 0.22
SYNE3-201ENST00000334258 GTPBP4Q9BZE4 634 aaKnown RBP16.43■□□□□ 0.22
SYNE3-201ENST00000334258 RGS12O14924 1447 aa16.43■□□□□ 0.22
SYNE3-201ENST00000334258 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.43■□□□□ 0.22
SYNE3-201ENST00000334258 KIAA1524Q8TCG1 905 aa16.42■□□□□ 0.22
SYNE3-201ENST00000334258 VPS37CA5D8V6 355 aaPredicted RBP16.42■□□□□ 0.22
SYNE3-201ENST00000334258 EIF4A2Q14240 407 aaKnown RBP16.42■□□□□ 0.22
SYNE3-201ENST00000334258 ATP7BP35670 1465 aa16.42■□□□□ 0.22
SYNE3-201ENST00000334258 RIMS1Q86UR5 1692 aaKnown RBP16.41■□□□□ 0.22
SYNE3-201ENST00000334258 GNAI3P08754 354 aa16.41■□□□□ 0.22
SYNE3-201ENST00000334258 DNM1Q05193 864 aaKnown RBP16.41■□□□□ 0.22
SYNE3-201ENST00000334258 SETD1AO15047 1707 aaKnown RBP16.41■□□□□ 0.22
SYNE3-201ENST00000334258 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.41■□□□□ 0.22
SYNE3-201ENST00000334258 CPSF1Q10570 1443 aaKnown RBP16.41■□□□□ 0.22
SYNE3-201ENST00000334258 F13A1P00488 732 aa16.41■□□□□ 0.22
SYNE3-201ENST00000334258 IL25Q9H293 177 aa16.41■□□□□ 0.22
SYNE3-201ENST00000334258 LIMCH1Q9UPQ0 1083 aa16.41■□□□□ 0.22
SYNE3-201ENST00000334258 TPM3P06753 285 aa16.4■□□□□ 0.22
SYNE3-201ENST00000334258 AK2P54819 239 aa16.4■□□□□ 0.22
SYNE3-201ENST00000334258 CCDC192P0DO97 292 aa16.4■□□□□ 0.22
SYNE3-201ENST00000334258 CPA1P15085 419 aa16.4■□□□□ 0.22
SYNE3-201ENST00000334258 HSPA4P34932 840 aa16.4■□□□□ 0.22
SYNE3-201ENST00000334258 TMEM87AQ8NBN3 555 aa16.4■□□□□ 0.22
SYNE3-201ENST00000334258 PSME1Q06323 249 aa16.39■□□□□ 0.21
SYNE3-201ENST00000334258 CCDC83Q8IWF9 413 aa16.39■□□□□ 0.21
SYNE3-201ENST00000334258 LRRFIP2Q9Y608 721 aaKnown RBP16.39■□□□□ 0.21
SYNE3-201ENST00000334258 EDC4Q6P2E9 1401 aaKnown RBP16.39■□□□□ 0.21
SYNE3-201ENST00000334258 CDC42BPGQ6DT37 1551 aa16.39■□□□□ 0.21
SYNE3-201ENST00000334258 SETD1BQ9UPS6 1966 aaKnown RBP16.39■□□□□ 0.21
SYNE3-201ENST00000334258 CAMK4Q16566 473 aa16.39■□□□□ 0.21
SYNE3-201ENST00000334258 PROSER2Q86WR7 435 aaPredicted RBP16.39■□□□□ 0.21
SYNE3-201ENST00000334258 CHMP4AQ9BY43 222 aa16.39■□□□□ 0.21
SYNE3-201ENST00000334258 KCNF1Q9H3M0 494 aa16.39■□□□□ 0.21
SYNE3-201ENST00000334258 MAP3K19Q56UN5 1328 aa16.39■□□□□ 0.21
SYNE3-201ENST00000334258 AP5Z1O43299 807 aa16.38■□□□□ 0.21
SYNE3-201ENST00000334258 PTGS1P23219 599 aa16.38■□□□□ 0.21
SYNE3-201ENST00000334258 ATP8B2P98198 1209 aa16.38■□□□□ 0.21
SYNE3-201ENST00000334258 KIAA0232Q92628 1395 aa16.38■□□□□ 0.21
SYNE3-201ENST00000334258 RPAP1Q9BWH6 1393 aaPredicted RBP16.37■□□□□ 0.21
SYNE3-201ENST00000334258 SURF6O75683 361 aaKnown RBP16.37■□□□□ 0.21
SYNE3-201ENST00000334258 KIF20AO95235 890 aa16.37■□□□□ 0.21
SYNE3-201ENST00000334258 CASTP20810 708 aaKnown RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms