RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 USPL1Q5W0Q7 1092 aa23.65■■□□□ 1.38
HDDC3-201ENST00000330334 RTF1Q92541 710 aaKnown RBP23.65■■□□□ 1.38
HDDC3-201ENST00000330334 FMNL2Q96PY5 1086 aa23.65■■□□□ 1.38
HDDC3-201ENST00000330334 COL15A1P39059 1388 aa23.65■■□□□ 1.38
HDDC3-201ENST00000330334 BTBD11A6QL63 1104 aa23.64■■□□□ 1.37
HDDC3-201ENST00000330334 EIF5P55010 431 aaKnown RBP23.64■■□□□ 1.37
HDDC3-201ENST00000330334 DDR1Q08345 913 aa23.64■■□□□ 1.37
HDDC3-201ENST00000330334 A0A0G2JLW4 131 aa23.63■■□□□ 1.37
HDDC3-201ENST00000330334 SIPA1L3O60292 1781 aaPredicted RBP23.63■■□□□ 1.37
HDDC3-201ENST00000330334 A0A087WZG4 1122 aa23.62■■□□□ 1.37
HDDC3-201ENST00000330334 POLRMTO00411 1230 aaKnown RBP23.62■■□□□ 1.37
HDDC3-201ENST00000330334 DPEP1P16444 411 aa23.61■■□□□ 1.37
HDDC3-201ENST00000330334 KCNA3P22001 575 aa23.61■■□□□ 1.37
HDDC3-201ENST00000330334 CANXP27824 592 aaKnown RBP23.61■■□□□ 1.37
HDDC3-201ENST00000330334 RALBP1Q15311 655 aa23.6■■□□□ 1.37
HDDC3-201ENST00000330334 NEFMP07197 916 aa23.59■■□□□ 1.37
HDDC3-201ENST00000330334 IL6STP40189 918 aaPredicted RBP23.59■■□□□ 1.37
HDDC3-201ENST00000330334 NFIXQ14938 502 aa23.59■■□□□ 1.37
HDDC3-201ENST00000330334 MCM10Q7L590 875 aa23.59■■□□□ 1.37
HDDC3-201ENST00000330334 PNNQ9H307 717 aaKnown RBP23.59■■□□□ 1.37
HDDC3-201ENST00000330334 BCL2L12Q9HB09 334 aa23.59■■□□□ 1.37
HDDC3-201ENST00000330334 KIAA1551Q9HCM1 1747 aa23.59■■□□□ 1.37
HDDC3-201ENST00000330334 KCNQ3O43525 872 aa23.58■■□□□ 1.37
HDDC3-201ENST00000330334 PLEKHF1Q96S99 279 aa23.58■■□□□ 1.37
HDDC3-201ENST00000330334 WWC3Q9ULE0 1092 aa23.58■■□□□ 1.37
HDDC3-201ENST00000330334 BCS1LQ9Y276 419 aa23.57■■□□□ 1.36
HDDC3-201ENST00000330334 ADCY9O60503 1353 aa23.56■■□□□ 1.36
HDDC3-201ENST00000330334 TAF7Q15545 349 aaPredicted RBP23.56■■□□□ 1.36
HDDC3-201ENST00000330334 PIM2Q9P1W9 311 aa23.56■■□□□ 1.36
HDDC3-201ENST00000330334 SNRPA1P09661 255 aaKnown RBP23.55■■□□□ 1.36
HDDC3-201ENST00000330334 A1BGP04217 495 aa23.54■■□□□ 1.36
HDDC3-201ENST00000330334 C1QTNF8P60827 252 aa23.54■■□□□ 1.36
HDDC3-201ENST00000330334 DCTN1Q14203 1278 aa23.54■■□□□ 1.36
HDDC3-201ENST00000330334 N4BP2Q86UW6 1770 aaPredicted RBP23.53■■□□□ 1.36
HDDC3-201ENST00000330334 ATP10DQ9P241 1426 aa23.53■■□□□ 1.36
HDDC3-201ENST00000330334 GIGYF1O75420 1035 aaPredicted RBP23.53■■□□□ 1.36
HDDC3-201ENST00000330334 SERPINB2P05120 415 aa23.53■■□□□ 1.36
HDDC3-201ENST00000330334 USP16Q9Y5T5 823 aa23.53■■□□□ 1.36
HDDC3-201ENST00000330334 DALRD3Q5D0E6 543 aaKnown RBP23.52■■□□□ 1.36
HDDC3-201ENST00000330334 NPM2Q86SE8 214 aaKnown RBP23.52■■□□□ 1.36
HDDC3-201ENST00000330334 DDX10Q13206 875 aaKnown RBP23.51■■□□□ 1.35
HDDC3-201ENST00000330334 NFE2L2Q16236 605 aa23.51■■□□□ 1.35
HDDC3-201ENST00000330334 PNISRQ8TF01 805 aaKnown RBP23.51■■□□□ 1.35
HDDC3-201ENST00000330334 TBC1D2BQ9UPU7 963 aa23.5■■□□□ 1.35
HDDC3-201ENST00000330334 CHRNA5P30532 468 aa23.49■■□□□ 1.35
HDDC3-201ENST00000330334 ARHGAP27Q6ZUM4 889 aa23.49■■□□□ 1.35
HDDC3-201ENST00000330334 NRXN2Q9P2S2 1712 aa23.49■■□□□ 1.35
HDDC3-201ENST00000330334 BRCA1P38398 1863 aaKnown RBP23.49■■□□□ 1.35
HDDC3-201ENST00000330334 TBC1D9BQ66K14 1250 aa23.48■■□□□ 1.35
HDDC3-201ENST00000330334 GPBP1L1Q9HC44 474 aaPredicted RBP23.48■■□□□ 1.35
HDDC3-201ENST00000330334 RGL2O15211 777 aa23.47■■□□□ 1.35
HDDC3-201ENST00000330334 CAMTA2O94983 1202 aa23.47■■□□□ 1.35
HDDC3-201ENST00000330334 ZNF330Q9Y3S2 320 aaPredicted RBP23.47■■□□□ 1.35
HDDC3-201ENST00000330334 MAPK8IP3Q9UPT6 1336 aa23.47■■□□□ 1.35
HDDC3-201ENST00000330334 PRAMEF22A3QJZ6 481 aa23.46■■□□□ 1.35
HDDC3-201ENST00000330334 CLEC4GQ6UXB4 293 aa23.46■■□□□ 1.35
HDDC3-201ENST00000330334 PDZRN3Q9UPQ7 1066 aa23.46■■□□□ 1.35
HDDC3-201ENST00000330334 MYBBP1AQ9BQG0 1328 aaKnown RBP23.45■■□□□ 1.34
HDDC3-201ENST00000330334 BICDL1Q6ZP65 573 aa23.45■■□□□ 1.34
HDDC3-201ENST00000330334 DZIP3Q86Y13 1208 aaKnown RBP23.45■■□□□ 1.34
HDDC3-201ENST00000330334 CARMIL3Q8ND23 1372 aa23.44■■□□□ 1.34
HDDC3-201ENST00000330334 SETDB2Q96T68 719 aa23.44■■□□□ 1.34
HDDC3-201ENST00000330334 BRIP1Q9BX63 1249 aa23.44■■□□□ 1.34
HDDC3-201ENST00000330334 MIS18AQ9NYP9 233 aa23.44■■□□□ 1.34
HDDC3-201ENST00000330334 AFDNP55196 1824 aaKnown RBP23.44■■□□□ 1.34
HDDC3-201ENST00000330334 ARFGEF1Q9Y6D6 1849 aa23.43■■□□□ 1.34
HDDC3-201ENST00000330334 H0YIN7 160 aa23.43■■□□□ 1.34
HDDC3-201ENST00000330334 NBPF26B4DH59 902 aa23.42■■□□□ 1.34
HDDC3-201ENST00000330334 NBPF10Q6P3W6 841 aaKnown RBP23.42■■□□□ 1.34
HDDC3-201ENST00000330334 NBPF15Q8N660 670 aa23.42■■□□□ 1.34
HDDC3-201ENST00000330334 SCN7AQ01118 1682 aa23.41■■□□□ 1.34
HDDC3-201ENST00000330334 PDE6BP35913 854 aa23.41■■□□□ 1.34
HDDC3-201ENST00000330334 EIF4A1P60842 406 aaKnown RBP23.41■■□□□ 1.34
HDDC3-201ENST00000330334 C2CD5Q86YS7 1000 aa23.41■■□□□ 1.34
HDDC3-201ENST00000330334 TTLL6Q8N841 843 aa23.41■■□□□ 1.34
HDDC3-201ENST00000330334 ZNF652Q9Y2D9 606 aa23.41■■□□□ 1.34
HDDC3-201ENST00000330334 PRR5LQ6MZQ0 368 aa23.4■■□□□ 1.34
HDDC3-201ENST00000330334 BABAM1Q9NWV8 329 aa23.4■■□□□ 1.34
HDDC3-201ENST00000330334 PIP4K2AP48426 406 aaPredicted RBP23.39■■□□□ 1.33
HDDC3-201ENST00000330334 RIPK4P57078 832 aa23.39■■□□□ 1.33
HDDC3-201ENST00000330334 THUMPD2Q9BTF0 503 aaKnown RBP23.39■■□□□ 1.33
HDDC3-201ENST00000330334 DLG5Q8TDM6 1919 aa23.39■■□□□ 1.33
HDDC3-201ENST00000330334 C9orf131Q5VYM1 1079 aa23.38■■□□□ 1.33
HDDC3-201ENST00000330334 ZNF526Q8TF50 670 aaPredicted RBP23.38■■□□□ 1.33
HDDC3-201ENST00000330334 TMPOP42166 694 aaKnown RBP23.37■■□□□ 1.33
HDDC3-201ENST00000330334 LMOD3Q0VAK6 560 aa23.37■■□□□ 1.33
HDDC3-201ENST00000330334 CNBD1Q8NA66 436 aa23.37■■□□□ 1.33
HDDC3-201ENST00000330334 ST5P78524 1137 aa23.35■■□□□ 1.33
HDDC3-201ENST00000330334 KDM3BQ7LBC6 1761 aa23.35■■□□□ 1.33
HDDC3-201ENST00000330334 SENP3-EIF4A1A0A087X0R7 540 aa23.34■■□□□ 1.33
HDDC3-201ENST00000330334 KIF3CO14782 793 aa23.34■■□□□ 1.33
HDDC3-201ENST00000330334 PRKRIP1Q9H875 184 aaPredicted RBP23.34■■□□□ 1.33
HDDC3-201ENST00000330334 BCORQ6W2J9 1755 aa23.34■■□□□ 1.33
HDDC3-201ENST00000330334 DLEC1Q9Y238 1755 aa23.33■■□□□ 1.33
HDDC3-201ENST00000330334 ERVV-1B6SEH8 477 aa23.33■■□□□ 1.33
HDDC3-201ENST00000330334 TSPYL4Q9UJ04 414 aa23.33■■□□□ 1.33
HDDC3-201ENST00000330334 ERBB4Q15303 1308 aa23.33■■□□□ 1.32
HDDC3-201ENST00000330334 NPHP1O15259 732 aa23.32■■□□□ 1.32
HDDC3-201ENST00000330334 WDR43Q15061 677 aaKnown RBP eCLIP23.32■■□□□ 1.32
HDDC3-201ENST00000330334 TPTE2Q6XPS3 522 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms