RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 EN1Q05925 392 aaPredicted RBP12.26□□□□□ -0.45
RFX3-201ENST00000302303 PROSER3Q2NL68 480 aa12.26□□□□□ -0.45
RFX3-201ENST00000302303 INTS5Q6P9B9 1019 aaKnown RBP12.26□□□□□ -0.45
RFX3-201ENST00000302303 DEFB132Q7Z7B7 95 aa12.26□□□□□ -0.45
RFX3-201ENST00000302303 SSH1Q8WYL5 1049 aa12.26□□□□□ -0.45
RFX3-201ENST00000302303 EZH2Q15910 746 aaKnown RBP12.25□□□□□ -0.45
RFX3-201ENST00000302303 AMIGO3Q86WK7 504 aa12.25□□□□□ -0.45
RFX3-201ENST00000302303 NECTIN2Q92692 538 aa12.25□□□□□ -0.45
RFX3-201ENST00000302303 CCNL1Q9UK58 526 aaPredicted RBP12.25□□□□□ -0.45
RFX3-201ENST00000302303 COL5A3P25940 1745 aaPredicted RBP12.25□□□□□ -0.45
RFX3-201ENST00000302303 MYH14Q7Z406 1995 aaKnown RBP12.24□□□□□ -0.45
RFX3-201ENST00000302303 BCAR3O75815 825 aa12.24□□□□□ -0.45
RFX3-201ENST00000302303 EIF2S2P20042 333 aaKnown RBP12.24□□□□□ -0.45
RFX3-201ENST00000302303 PIP4K2AP48426 406 aaPredicted RBP12.24□□□□□ -0.45
RFX3-201ENST00000302303 HDGFL1Q5TGJ6 251 aa12.24□□□□□ -0.45
RFX3-201ENST00000302303 CCDC125Q86Z20 511 aa12.24□□□□□ -0.45
RFX3-201ENST00000302303 TEX13AQ9BXU3 409 aaPredicted RBP12.24□□□□□ -0.45
RFX3-201ENST00000302303 RGPD3A6NKT7 1758 aaPredicted RBP12.24□□□□□ -0.45
RFX3-201ENST00000302303 RGPD4Q7Z3J3 1758 aa12.24□□□□□ -0.45
RFX3-201ENST00000302303 RREB1Q92766 1687 aa12.24□□□□□ -0.45
RFX3-201ENST00000302303 TAF1LQ8IZX4 1826 aa12.24□□□□□ -0.45
RFX3-201ENST00000302303 LAMB4A4D0S4 1761 aa12.23□□□□□ -0.45
RFX3-201ENST00000302303 ANXA1P04083 346 aa12.23□□□□□ -0.45
RFX3-201ENST00000302303 BRPF1P55201 1214 aaPredicted RBP12.23□□□□□ -0.45
RFX3-201ENST00000302303 SLC27A3Q5K4L6 730 aa12.23□□□□□ -0.45
RFX3-201ENST00000302303 G2E3Q7L622 706 aa12.23□□□□□ -0.45
RFX3-201ENST00000302303 MRPL50Q8N5N7 158 aaKnown RBP12.23□□□□□ -0.45
RFX3-201ENST00000302303 ZNF428Q96B54 188 aa12.23□□□□□ -0.45
RFX3-201ENST00000302303 CHPF2Q9P2E5 772 aa12.23□□□□□ -0.45
RFX3-201ENST00000302303 CRKLP46109 303 aaKnown RBP12.22□□□□□ -0.45
RFX3-201ENST00000302303 ALDH1L2Q3SY69 923 aa12.22□□□□□ -0.45
RFX3-201ENST00000302303 SMIM5Q71RC9 77 aa12.22□□□□□ -0.45
RFX3-201ENST00000302303 BCL2L13Q9BXK5 485 aa12.22□□□□□ -0.45
RFX3-201ENST00000302303 RCAN3Q9UKA8 241 aa12.22□□□□□ -0.45
RFX3-201ENST00000302303 ZBTB1Q9Y2K1 713 aa12.22□□□□□ -0.45
RFX3-201ENST00000302303 RC3H1Q5TC82 1133 aaKnown RBP12.21□□□□□ -0.45
RFX3-201ENST00000302303 CCDC30Q5VVM6 783 aa12.21□□□□□ -0.45
RFX3-201ENST00000302303 PHAXQ9H814 394 aaKnown RBP12.21□□□□□ -0.45
RFX3-201ENST00000302303 DDX21Q9NR30 783 aaKnown RBP eCLIP12.21□□□□□ -0.45
RFX3-201ENST00000302303 CNTNAP4Q9C0A0 1308 aa12.21□□□□□ -0.45
RFX3-201ENST00000302303 NPM3O75607 178 aaKnown RBP12.21□□□□□ -0.46
RFX3-201ENST00000302303 STARD3NLO95772 234 aa12.21□□□□□ -0.46
RFX3-201ENST00000302303 SLC4A2P04920 1241 aa12.21□□□□□ -0.46
RFX3-201ENST00000302303 EIF5P55010 431 aaKnown RBP12.21□□□□□ -0.46
RFX3-201ENST00000302303 AKT1S1Q96B36 256 aa12.21□□□□□ -0.46
RFX3-201ENST00000302303 CCDC87Q9NVE4 849 aa12.21□□□□□ -0.46
RFX3-201ENST00000302303 DBF4Q9UBU7 674 aaPredicted RBP12.21□□□□□ -0.46
RFX3-201ENST00000302303 RNF123Q5XPI4 1314 aa12.2□□□□□ -0.46
RFX3-201ENST00000302303 C4BP0C0L5 1744 aa12.2□□□□□ -0.46
RFX3-201ENST00000302303 BAG6P46379 1132 aa12.2□□□□□ -0.46
RFX3-201ENST00000302303 ZNF827Q17R98 1081 aa12.2□□□□□ -0.46
RFX3-201ENST00000302303 ERBB4Q15303 1308 aa12.2□□□□□ -0.46
RFX3-201ENST00000302303 ANO8Q9HCE9 1232 aaPredicted RBP12.19□□□□□ -0.46
RFX3-201ENST00000302303 TNNQ9UQP3 1299 aa12.19□□□□□ -0.46
RFX3-201ENST00000302303 RPS6KA4O75676 772 aa12.18□□□□□ -0.46
RFX3-201ENST00000302303 MYL6BP14649 208 aa12.18□□□□□ -0.46
RFX3-201ENST00000302303 CANXP27824 592 aaKnown RBP12.18□□□□□ -0.46
RFX3-201ENST00000302303 SMC4Q9NTJ3 1288 aa12.18□□□□□ -0.46
RFX3-201ENST00000302303 NUP188Q5SRE5 1749 aa12.17□□□□□ -0.46
RFX3-201ENST00000302303 IL6STP40189 918 aaPredicted RBP12.17□□□□□ -0.46
RFX3-201ENST00000302303 SF3B2Q13435 895 aaKnown RBP12.17□□□□□ -0.46
RFX3-201ENST00000302303 TTLL7Q6ZT98 887 aa12.17□□□□□ -0.46
RFX3-201ENST00000302303 COPS6Q7L5N1 327 aa12.17□□□□□ -0.46
RFX3-201ENST00000302303 NOB1Q9ULX3 412 aaKnown RBP12.17□□□□□ -0.46
RFX3-201ENST00000302303 FLIIQ13045 1269 aa12.16□□□□□ -0.46
RFX3-201ENST00000302303 XAGE3Q8WTP9 111 aa12.16□□□□□ -0.46
RFX3-201ENST00000302303 HYPKQ9NX55 129 aa12.16□□□□□ -0.46
RFX3-201ENST00000302303 PLIN1O60240 522 aa12.16□□□□□ -0.46
RFX3-201ENST00000302303 STK31Q9BXU1 1019 aa12.16□□□□□ -0.46
RFX3-201ENST00000302303 SUPT16HQ9Y5B9 1047 aaKnown RBP12.16□□□□□ -0.46
RFX3-201ENST00000302303 ADCY9O60503 1353 aa12.16□□□□□ -0.46
RFX3-201ENST00000302303 UBR3Q6ZT12 1888 aa12.16□□□□□ -0.46
RFX3-201ENST00000302303 GNPATO15228 680 aa12.15□□□□□ -0.46
RFX3-201ENST00000302303 ARHGAP45Q92619 1136 aa12.15□□□□□ -0.46
RFX3-201ENST00000302303 ARHGEF1Q92888 912 aaKnown RBP12.15□□□□□ -0.46
RFX3-201ENST00000302303 CHMP4AQ9BY43 222 aa12.15□□□□□ -0.46
RFX3-201ENST00000302303 CACNA1FO60840 1977 aa12.14□□□□□ -0.47
RFX3-201ENST00000302303 RLBP1P12271 317 aa12.14□□□□□ -0.47
RFX3-201ENST00000302303 TRIM27P14373 513 aa12.14□□□□□ -0.47
RFX3-201ENST00000302303 SLC15A2Q16348 729 aa12.14□□□□□ -0.47
RFX3-201ENST00000302303 C20orf194Q5TEA3 1177 aa12.14□□□□□ -0.47
RFX3-201ENST00000302303 CNKSR2Q8WXI2 1034 aa12.14□□□□□ -0.47
RFX3-201ENST00000302303 BCL2L12Q9HB09 334 aa12.14□□□□□ -0.47
RFX3-201ENST00000302303 COL15A1P39059 1388 aa12.13□□□□□ -0.47
RFX3-201ENST00000302303 PNPLA7Q6ZV29 1317 aa12.13□□□□□ -0.47
RFX3-201ENST00000302303 TUBGCP6Q96RT7 1819 aa12.13□□□□□ -0.47
RFX3-201ENST00000302303 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.13□□□□□ -0.47
RFX3-201ENST00000302303 PI4KAP2A4QPH2 592 aa12.13□□□□□ -0.47
RFX3-201ENST00000302303 F6X3S4 739 aa12.13□□□□□ -0.47
RFX3-201ENST00000302303 MSH5O43196 834 aa12.13□□□□□ -0.47
RFX3-201ENST00000302303 CAMTA2O94983 1202 aa12.13□□□□□ -0.47
RFX3-201ENST00000302303 CENPBP07199 599 aaPredicted RBP12.13□□□□□ -0.47
RFX3-201ENST00000302303 RRP1P56182 461 aaKnown RBP12.13□□□□□ -0.47
RFX3-201ENST00000302303 AIMP1Q12904 312 aaKnown RBP12.13□□□□□ -0.47
RFX3-201ENST00000302303 HLFQ16534 295 aa12.13□□□□□ -0.47
RFX3-201ENST00000302303 COL23A1Q86Y22 540 aaPredicted RBP12.13□□□□□ -0.47
RFX3-201ENST00000302303 PI4KAP1Q8N8J0 262 aa12.13□□□□□ -0.47
RFX3-201ENST00000302303 TBC1D2BQ9UPU7 963 aa12.13□□□□□ -0.47
RFX3-201ENST00000302303 RTCBQ9Y3I0 505 aaKnown RBP12.13□□□□□ -0.47
RFX3-201ENST00000302303 PTPRCP08575 1304 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms