RNA–Protein interactions for RNA: ENST00000299333.7

SCN3B-201, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 5,665 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-201ENST00000299333 ZNF165P49910 485 aa17.17■□□□□ 0.34
SCN3B-201ENST00000299333 CCDC6Q16204 474 aa17.17■□□□□ 0.34
SCN3B-201ENST00000299333 TTC31Q49AM3 519 aaPredicted RBP17.17■□□□□ 0.34
SCN3B-201ENST00000299333 RPAP2Q8IXW5 612 aaPredicted RBP17.17■□□□□ 0.34
SCN3B-201ENST00000299333 LARP6Q9BRS8 491 aaKnown RBP17.17■□□□□ 0.34
SCN3B-201ENST00000299333 ARFGAP3Q9NP61 516 aa17.17■□□□□ 0.34
SCN3B-201ENST00000299333 UVSSAQ2YD98 709 aa17.17■□□□□ 0.34
SCN3B-201ENST00000299333 TSG101Q99816 390 aa17.17■□□□□ 0.34
SCN3B-201ENST00000299333 TAOK3Q9H2K8 898 aa17.17■□□□□ 0.34
SCN3B-201ENST00000299333 CCDC160A6NGH7 325 aa17.16■□□□□ 0.34
SCN3B-201ENST00000299333 MSL1Q68DK7 614 aa17.16■□□□□ 0.34
SCN3B-201ENST00000299333 XRCC6P12956 609 aaKnown RBP eCLIP17.16■□□□□ 0.34
SCN3B-201ENST00000299333 HCLS1P14317 486 aaPredicted RBP17.16■□□□□ 0.34
SCN3B-201ENST00000299333 C20orf194Q5TEA3 1177 aa17.16■□□□□ 0.34
SCN3B-201ENST00000299333 RBM28Q9NW13 759 aaKnown RBP17.16■□□□□ 0.34
SCN3B-201ENST00000299333 HYPKQ9NX55 129 aa17.16■□□□□ 0.34
SCN3B-201ENST00000299333 TFIP11Q9UBB9 837 aaKnown RBP17.16■□□□□ 0.34
SCN3B-201ENST00000299333 CAPN2P17655 700 aa17.16■□□□□ 0.34
SCN3B-201ENST00000299333 PRPF4BQ13523 1007 aaKnown RBP17.16■□□□□ 0.34
SCN3B-201ENST00000299333 C8orf76Q96K31 380 aa17.16■□□□□ 0.34
SCN3B-201ENST00000299333 CCDC94Q9BW85 323 aaPredicted RBP17.16■□□□□ 0.34
SCN3B-201ENST00000299333 PANK2Q9BZ23 570 aa17.16■□□□□ 0.34
SCN3B-201ENST00000299333 SH2B1Q9NRF2 756 aaPredicted RBP17.16■□□□□ 0.34
SCN3B-201ENST00000299333 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.16■□□□□ 0.34
SCN3B-201ENST00000299333 V9GYY5 206 aaPredicted RBP17.16■□□□□ 0.34
SCN3B-201ENST00000299333 CCDC171Q6TFL3 1326 aa17.16■□□□□ 0.34
SCN3B-201ENST00000299333 FGD5Q6ZNL6 1462 aa17.16■□□□□ 0.34
SCN3B-201ENST00000299333 PLEKHH1Q9ULM0 1364 aa17.16■□□□□ 0.34
SCN3B-201ENST00000299333 KLHL40Q2TBA0 621 aa17.16■□□□□ 0.34
SCN3B-201ENST00000299333 MX1P20591 662 aa17.15■□□□□ 0.34
SCN3B-201ENST00000299333 ZNF76P36508 570 aa17.15■□□□□ 0.34
SCN3B-201ENST00000299333 CFAP57Q96MR6 1250 aa17.15■□□□□ 0.34
SCN3B-201ENST00000299333 ISM2Q6H9L7 571 aa17.15■□□□□ 0.34
SCN3B-201ENST00000299333 CCDC150Q8NCX0 1101 aa17.15■□□□□ 0.34
SCN3B-201ENST00000299333 ATRIPQ8WXE1 791 aa17.15■□□□□ 0.34
SCN3B-201ENST00000299333 NCOA2Q15596 1464 aa17.15■□□□□ 0.34
SCN3B-201ENST00000299333 USP5P45974 858 aa17.15■□□□□ 0.34
SCN3B-201ENST00000299333 C10orf67Q8IYJ2 551 aa17.15■□□□□ 0.34
SCN3B-201ENST00000299333 ZBTB9Q96C00 473 aa17.15■□□□□ 0.34
SCN3B-201ENST00000299333 FAM114A1Q8IWE2 563 aa17.14■□□□□ 0.34
SCN3B-201ENST00000299333 SPINK5Q9NQ38 1064 aaPredicted RBP17.14■□□□□ 0.34
SCN3B-201ENST00000299333 DZIP1Q86YF9 867 aaKnown RBP17.14■□□□□ 0.33
SCN3B-201ENST00000299333 PTPRGP23470 1445 aa17.14■□□□□ 0.33
SCN3B-201ENST00000299333 FSD2A1L4K1 749 aa17.14■□□□□ 0.33
SCN3B-201ENST00000299333 CCDC96Q2M329 555 aa17.14■□□□□ 0.33
SCN3B-201ENST00000299333 SULT6B1Q6IMI4 303 aa17.14■□□□□ 0.33
SCN3B-201ENST00000299333 LRSAM1Q6UWE0 723 aa17.14■□□□□ 0.33
SCN3B-201ENST00000299333 RBM42Q9BTD8 480 aaKnown RBP17.14■□□□□ 0.33
SCN3B-201ENST00000299333 MYL6BP14649 208 aa17.14■□□□□ 0.33
SCN3B-201ENST00000299333 PLEKHO1Q53GL0 409 aaPredicted RBP17.14■□□□□ 0.33
SCN3B-201ENST00000299333 UBA5Q9GZZ9 404 aa17.14■□□□□ 0.33
SCN3B-201ENST00000299333 DNAI1Q9UI46 699 aa17.14■□□□□ 0.33
SCN3B-201ENST00000299333 BANK1Q8NDB2 785 aa17.13■□□□□ 0.33
SCN3B-201ENST00000299333 PUS7Q96PZ0 661 aaKnown RBP17.13■□□□□ 0.33
SCN3B-201ENST00000299333 LIMCH1Q9UPQ0 1083 aa17.13■□□□□ 0.33
SCN3B-201ENST00000299333 GIMAP6Q6P9H5 292 aa17.13■□□□□ 0.33
SCN3B-201ENST00000299333 SLFN5Q08AF3 891 aa17.13■□□□□ 0.33
SCN3B-201ENST00000299333 RAB11FIP3O75154 756 aa17.13■□□□□ 0.33
SCN3B-201ENST00000299333 HOMER2Q9NSB8 354 aa17.13■□□□□ 0.33
SCN3B-201ENST00000299333 GJB2P29033 226 aa17.12■□□□□ 0.33
SCN3B-201ENST00000299333 DRC1Q96MC2 740 aa17.12■□□□□ 0.33
SCN3B-201ENST00000299333 GAPVD1Q14C86 1478 aa17.12■□□□□ 0.33
SCN3B-201ENST00000299333 SKILP12757 684 aa17.12■□□□□ 0.33
SCN3B-201ENST00000299333 MTIF2P46199 727 aaKnown RBP17.12■□□□□ 0.33
SCN3B-201ENST00000299333 SWAP70Q9UH65 585 aa17.12■□□□□ 0.33
SCN3B-201ENST00000299333 NOP2P46087 812 aaKnown RBP17.12■□□□□ 0.33
SCN3B-201ENST00000299333 GBP6Q6ZN66 633 aa17.12■□□□□ 0.33
SCN3B-201ENST00000299333 IDH1O75874 414 aaKnown RBP17.11■□□□□ 0.33
SCN3B-201ENST00000299333 SCLT1Q96NL6 688 aa17.11■□□□□ 0.33
SCN3B-201ENST00000299333 U3KPZ7 1027 aaPredicted RBP17.11■□□□□ 0.33
SCN3B-201ENST00000299333 ANKRD50Q9ULJ7 1429 aa17.11■□□□□ 0.33
SCN3B-201ENST00000299333 STX6O43752 255 aa17.11■□□□□ 0.33
SCN3B-201ENST00000299333 CTAGE15A4D2H0 777 aa17.11■□□□□ 0.33
SCN3B-201ENST00000299333 CTAGE8P0CG41 777 aa17.11■□□□□ 0.33
SCN3B-201ENST00000299333 CTAGE6Q86UF2 777 aa17.11■□□□□ 0.33
SCN3B-201ENST00000299333 CTAGE4Q8IX94 777 aa17.11■□□□□ 0.33
SCN3B-201ENST00000299333 CEP83Q9Y592 693 aa17.11■□□□□ 0.33
SCN3B-201ENST00000299333 CCDC186Q7Z3E2 898 aa17.11■□□□□ 0.33
SCN3B-201ENST00000299333 CTNNA2P26232 953 aa17.1■□□□□ 0.33
SCN3B-201ENST00000299333 NAA25Q14CX7 972 aa17.1■□□□□ 0.33
SCN3B-201ENST00000299333 FGFR1OPO95684 399 aaKnown RBP17.1■□□□□ 0.33
SCN3B-201ENST00000299333 UBE2HP62256 183 aa17.1■□□□□ 0.33
SCN3B-201ENST00000299333 CCDC82Q8N4S0 544 aa17.1■□□□□ 0.33
SCN3B-201ENST00000299333 AIDAQ96BJ3 306 aa17.1■□□□□ 0.33
SCN3B-201ENST00000299333 ANKRD18BA2A2Z9 1011 aa17.1■□□□□ 0.33
SCN3B-201ENST00000299333 CCDC121Q6ZUS5 278 aa17.1■□□□□ 0.33
SCN3B-201ENST00000299333 VPS18Q9P253 973 aa17.1■□□□□ 0.33
SCN3B-201ENST00000299333 MYO1BO43795 1136 aa17.1■□□□□ 0.33
SCN3B-201ENST00000299333 SCAPERQ9BY12 1400 aa17.1■□□□□ 0.33
SCN3B-201ENST00000299333 BRD2P25440 801 aaKnown RBP17.1■□□□□ 0.33
SCN3B-201ENST00000299333 CFAP70Q5T0N1 1121 aa17.1■□□□□ 0.33
SCN3B-201ENST00000299333 KLHL34Q8N239 644 aa17.1■□□□□ 0.33
SCN3B-201ENST00000299333 RASSF4Q9H2L5 321 aa17.1■□□□□ 0.33
SCN3B-201ENST00000299333 CEP126Q9P2H0 1117 aa17.1■□□□□ 0.33
SCN3B-201ENST00000299333 OTUD6BQ8N6M0 293 aa17.09■□□□□ 0.33
SCN3B-201ENST00000299333 ZKSCAN5Q9Y2L8 839 aa17.09■□□□□ 0.33
SCN3B-201ENST00000299333 MXRA7P84157 204 aa17.09■□□□□ 0.33
SCN3B-201ENST00000299333 NSRP1Q9H0G5 558 aaKnown RBP17.09■□□□□ 0.33
SCN3B-201ENST00000299333 MRVI1Q9Y6F6 885 aa17.09■□□□□ 0.33
SCN3B-201ENST00000299333 A0A1W2PRG0 241 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms