RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 ERBB3P21860 1342 aa24.62■■□□□ 1.53
VPS53-201ENST00000291074 DDX11L8A8MPP1 907 aa24.62■■□□□ 1.53
VPS53-201ENST00000291074 SRGAP3O43295 1099 aa24.62■■□□□ 1.53
VPS53-201ENST00000291074 GIGYF1O75420 1035 aaPredicted RBP24.62■■□□□ 1.53
VPS53-201ENST00000291074 POLA2Q14181 598 aa24.62■■□□□ 1.53
VPS53-201ENST00000291074 SSFA2P28290 1259 aa24.61■■□□□ 1.53
VPS53-201ENST00000291074 ESYT1Q9BSJ8 1104 aa24.61■■□□□ 1.53
VPS53-201ENST00000291074 DBF4Q9UBU7 674 aaPredicted RBP24.61■■□□□ 1.53
VPS53-201ENST00000291074 STAP2Q9UGK3 403 aa24.61■■□□□ 1.53
VPS53-201ENST00000291074 OVOS2A0A0G2JMS6 1433 aa24.6■■□□□ 1.53
VPS53-201ENST00000291074 MAP3K2Q9Y2U5 619 aa24.59■■□□□ 1.53
VPS53-201ENST00000291074 STRCP1A6NGW2 1772 aa24.59■■□□□ 1.53
VPS53-201ENST00000291074 CHMLP26374 656 aa24.58■■□□□ 1.53
VPS53-201ENST00000291074 RHPN1Q8TCX5 695 aa24.58■■□□□ 1.53
VPS53-201ENST00000291074 HEG1Q9ULI3 1381 aa24.58■■□□□ 1.53
VPS53-201ENST00000291074 MST1RQ04912 1400 aa24.58■■□□□ 1.52
VPS53-201ENST00000291074 GBP4Q96PP9 640 aa24.58■■□□□ 1.52
VPS53-201ENST00000291074 NLRP2Q9NX02 1062 aa24.58■■□□□ 1.52
VPS53-201ENST00000291074 TMEM94Q12767 1356 aa24.57■■□□□ 1.52
VPS53-201ENST00000291074 MAP4K4O95819 1239 aaPredicted RBP24.57■■□□□ 1.52
VPS53-201ENST00000291074 CHMP4AQ9BY43 222 aa24.57■■□□□ 1.52
VPS53-201ENST00000291074 ATF3P18847 181 aa24.57■■□□□ 1.52
VPS53-201ENST00000291074 CABLES1Q8TDN4 633 aa24.57■■□□□ 1.52
VPS53-201ENST00000291074 ST18O60284 1047 aa24.56■■□□□ 1.52
VPS53-201ENST00000291074 ADAMTS7Q9UKP4 1686 aa24.56■■□□□ 1.52
VPS53-201ENST00000291074 RAB11FIP3O75154 756 aa24.55■■□□□ 1.52
VPS53-201ENST00000291074 SLC39A6Q13433 755 aa24.55■■□□□ 1.52
VPS53-201ENST00000291074 CWF19L2Q2TBE0 894 aaKnown RBP24.55■■□□□ 1.52
VPS53-201ENST00000291074 IL25Q9H293 177 aa24.55■■□□□ 1.52
VPS53-201ENST00000291074 ANO2Q9NQ90 1003 aa24.55■■□□□ 1.52
VPS53-201ENST00000291074 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.55■■□□□ 1.52
VPS53-201ENST00000291074 PALD1Q9ULE6 856 aa24.55■■□□□ 1.52
VPS53-201ENST00000291074 RAPGEF4Q8WZA2 1011 aa24.54■■□□□ 1.52
VPS53-201ENST00000291074 KSR2Q6VAB6 950 aa24.53■■□□□ 1.52
VPS53-201ENST00000291074 ZGPATQ8N5A5 531 aaKnown RBP24.53■■□□□ 1.52
VPS53-201ENST00000291074 KIF1BPQ96EK5 621 aa24.53■■□□□ 1.52
VPS53-201ENST00000291074 KDM6AO15550 1401 aaPredicted RBP24.53■■□□□ 1.52
VPS53-201ENST00000291074 SCN11AQ9UI33 1791 aa24.52■■□□□ 1.52
VPS53-201ENST00000291074 AOX1Q06278 1338 aa24.52■■□□□ 1.52
VPS53-201ENST00000291074 PKP1Q13835 747 aa24.52■■□□□ 1.52
VPS53-201ENST00000291074 PI4K2BQ8TCG2 481 aa24.52■■□□□ 1.52
VPS53-201ENST00000291074 C5P01031 1676 aa24.52■■□□□ 1.52
VPS53-201ENST00000291074 MEGF6O75095 1541 aa24.52■■□□□ 1.52
VPS53-201ENST00000291074 AIMP1Q12904 312 aaKnown RBP24.52■■□□□ 1.52
VPS53-201ENST00000291074 C9orf78Q9NZ63 289 aaPredicted RBP24.52■■□□□ 1.52
VPS53-201ENST00000291074 CHRNA2Q15822 529 aa24.51■■□□□ 1.51
VPS53-201ENST00000291074 CRYBG1Q9Y4K1 1723 aa24.51■■□□□ 1.51
VPS53-201ENST00000291074 GOLGA6L3A6NEY3 463 aa24.51■■□□□ 1.51
VPS53-201ENST00000291074 NEK4P51957 841 aa24.51■■□□□ 1.51
VPS53-201ENST00000291074 L1TD1Q5T7N2 865 aaKnown RBP24.51■■□□□ 1.51
VPS53-201ENST00000291074 FSD2A1L4K1 749 aa24.5■■□□□ 1.51
VPS53-201ENST00000291074 COL18A1P39060 1754 aa24.5■■□□□ 1.51
VPS53-201ENST00000291074 NPHP3Q7Z494 1330 aa24.5■■□□□ 1.51
VPS53-201ENST00000291074 OS9Q13438 667 aaPredicted RBP24.49■■□□□ 1.51
VPS53-201ENST00000291074 ALDH1L1O75891 902 aa24.48■■□□□ 1.51
VPS53-201ENST00000291074 CSB-PGBD3P0DP91 1061 aa24.48■■□□□ 1.51
VPS53-201ENST00000291074 ZNF790Q6PG37 636 aa24.48■■□□□ 1.51
VPS53-201ENST00000291074 HYPKQ9NX55 129 aa24.48■■□□□ 1.51
VPS53-201ENST00000291074 PA2G4Q9UQ80 394 aaKnown RBP24.48■■□□□ 1.51
VPS53-201ENST00000291074 PDIA6Q15084 440 aa24.48■■□□□ 1.51
VPS53-201ENST00000291074 NFATC2IPQ8NCF5 419 aa24.48■■□□□ 1.51
VPS53-201ENST00000291074 SLC52A2Q9HAB3 445 aa24.48■■□□□ 1.51
VPS53-201ENST00000291074 PHKG2P15735 406 aa24.48■■□□□ 1.51
VPS53-201ENST00000291074 TATP17735 454 aaPredicted RBP24.48■■□□□ 1.51
VPS53-201ENST00000291074 DDX21Q9NR30 783 aaKnown RBP eCLIP24.48■■□□□ 1.51
VPS53-201ENST00000291074 LMTK3Q96Q04 1460 aa24.47■■□□□ 1.51
VPS53-201ENST00000291074 BAG4O95429 457 aaKnown RBP24.47■■□□□ 1.51
VPS53-201ENST00000291074 XRCC6P12956 609 aaKnown RBP eCLIP24.47■■□□□ 1.518e-6■■□□□ 13.6
VPS53-201ENST00000291074 MTX1Q13505 466 aa24.47■■□□□ 1.51
VPS53-201ENST00000291074 MCCP23508 829 aa24.46■■□□□ 1.51
VPS53-201ENST00000291074 MYL6BP14649 208 aa24.46■■□□□ 1.51
VPS53-201ENST00000291074 CYP2E1P05181 493 aaPredicted RBP24.45■■□□□ 1.5
VPS53-201ENST00000291074 NOL8Q76FK4 1167 aaKnown RBP24.45■■□□□ 1.5
VPS53-201ENST00000291074 SUCLG2Q96I99 432 aa24.45■■□□□ 1.5
VPS53-201ENST00000291074 PANK2Q9BZ23 570 aa24.45■■□□□ 1.5
VPS53-201ENST00000291074 HSP90AB4PQ58FF6 505 aa24.44■■□□□ 1.5
VPS53-201ENST00000291074 LINS1Q8NG48 757 aa24.44■■□□□ 1.5
VPS53-201ENST00000291074 NUCB2P80303 420 aa24.44■■□□□ 1.5
VPS53-201ENST00000291074 CLEC17AQ6ZS10 378 aa24.44■■□□□ 1.5
VPS53-201ENST00000291074 KAZALD1Q96I82 304 aa24.44■■□□□ 1.5
VPS53-201ENST00000291074 TMX3Q96JJ7 454 aa24.44■■□□□ 1.5
VPS53-201ENST00000291074 SPG7Q9UQ90 795 aa24.44■■□□□ 1.5
VPS53-201ENST00000291074 TNS3Q68CZ2 1445 aa24.44■■□□□ 1.5
VPS53-201ENST00000291074 GRM8O00222 908 aa24.43■■□□□ 1.5
VPS53-201ENST00000291074 UPF3BQ9BZI7 483 aaKnown RBP24.43■■□□□ 1.5
VPS53-201ENST00000291074 DCCP43146 1447 aa24.43■■□□□ 1.5
VPS53-201ENST00000291074 ZNF496Q96IT1 587 aaPredicted RBP24.43■■□□□ 1.5
VPS53-201ENST00000291074 PIP4K2AP48426 406 aaPredicted RBP24.42■■□□□ 1.5
VPS53-201ENST00000291074 HSPA2P54652 639 aa24.42■■□□□ 1.5
VPS53-201ENST00000291074 DDX58O95786 925 aaKnown RBP24.42■■□□□ 1.5
VPS53-201ENST00000291074 BICC1Q9H694 974 aaKnown RBP24.42■■□□□ 1.5
VPS53-201ENST00000291074 CWC22Q9HCG8 908 aaKnown RBP24.42■■□□□ 1.5
VPS53-201ENST00000291074 CYP27B1O15528 508 aa24.41■■□□□ 1.5
VPS53-201ENST00000291074 IGKV5-2P06315 115 aa24.41■■□□□ 1.5
VPS53-201ENST00000291074 RIC3Q7Z5B4 369 aa24.41■■□□□ 1.5
VPS53-201ENST00000291074 IFNL2Q8IZJ0 200 aa24.41■■□□□ 1.5
VPS53-201ENST00000291074 ANAPC15P60006 121 aa24.41■■□□□ 1.5
VPS53-201ENST00000291074 CNTROBQ8N137 903 aa24.41■■□□□ 1.5
VPS53-201ENST00000291074 MCTP1Q6DN14 999 aa24.4■■□□□ 1.5
VPS53-201ENST00000291074 ZDHHC9Q9Y397 364 aa24.4■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms