RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 IBTKQ9P2D0 1353 aaPredicted RBP12.85□□□□□ -0.35
UPF3B-201ENST00000276201 ITGB4P16144 1822 aa12.85□□□□□ -0.35
UPF3B-201ENST00000276201 CLEC17AQ6ZS10 378 aa12.85□□□□□ -0.35
UPF3B-201ENST00000276201 PROM2Q8N271 834 aa12.85□□□□□ -0.35
UPF3B-201ENST00000276201 KDM6AO15550 1401 aaPredicted RBP12.84□□□□□ -0.35
UPF3B-201ENST00000276201 U2AF1L5P0DN76 240 aaPredicted RBP12.83□□□□□ -0.36
UPF3B-201ENST00000276201 U2AF1Q01081 240 aaKnown RBP eCLIP12.83□□□□□ -0.36
UPF3B-201ENST00000276201 TXNRD1Q16881 649 aa12.83□□□□□ -0.36
UPF3B-201ENST00000276201 ESPNB1AK53 854 aa12.83□□□□□ -0.36
UPF3B-201ENST00000276201 HSP90AA1P07900 732 aaKnown RBP12.83□□□□□ -0.36
UPF3B-201ENST00000276201 TPM2P07951 284 aa12.83□□□□□ -0.36
UPF3B-201ENST00000276201 C1orf141Q5JVX7 400 aa12.83□□□□□ -0.36
UPF3B-201ENST00000276201 BRPF1P55201 1214 aaPredicted RBP12.82□□□□□ -0.36
UPF3B-201ENST00000276201 MTHFSDQ2M296 383 aaKnown RBP12.82□□□□□ -0.36
UPF3B-201ENST00000276201 MPRIPQ6WCQ1 1025 aa12.82□□□□□ -0.36
UPF3B-201ENST00000276201 DCAF5Q96JK2 942 aa12.82□□□□□ -0.36
UPF3B-201ENST00000276201 GBP4Q96PP9 640 aa12.82□□□□□ -0.36
UPF3B-201ENST00000276201 PANK2Q9BZ23 570 aa12.82□□□□□ -0.36
UPF3B-201ENST00000276201 TNNQ9UQP3 1299 aa12.82□□□□□ -0.36
UPF3B-201ENST00000276201 HSP90AB1P08238 724 aaKnown RBP12.81□□□□□ -0.36
UPF3B-201ENST00000276201 PRKAR2BP31323 418 aa12.81□□□□□ -0.36
UPF3B-201ENST00000276201 RAB3GAP1Q15042 981 aa12.81□□□□□ -0.36
UPF3B-201ENST00000276201 PIGBQ92521 554 aa12.81□□□□□ -0.36
UPF3B-201ENST00000276201 LY75O60449 1722 aa12.81□□□□□ -0.36
UPF3B-201ENST00000276201 AKAP4Q5JQC9 854 aa12.81□□□□□ -0.36
UPF3B-201ENST00000276201 FTSJ3Q8IY81 847 aaKnown RBP12.81□□□□□ -0.36
UPF3B-201ENST00000276201 TERF1P54274 439 aa12.8□□□□□ -0.36
UPF3B-201ENST00000276201 NUCB1Q02818 461 aa12.8□□□□□ -0.36
UPF3B-201ENST00000276201 PHACTR3Q96KR7 559 aa12.8□□□□□ -0.36
UPF3B-201ENST00000276201 NAP1L5Q96NT1 182 aaPredicted RBP12.8□□□□□ -0.36
UPF3B-201ENST00000276201 PAPPAQ13219 1627 aa12.8□□□□□ -0.36
UPF3B-201ENST00000276201 SCN11AQ9UI33 1791 aa12.8□□□□□ -0.36
UPF3B-201ENST00000276201 FCHSD2O94868 740 aa12.8□□□□□ -0.36
UPF3B-201ENST00000276201 ATF7IPQ6VMQ6 1270 aa12.8□□□□□ -0.36
UPF3B-201ENST00000276201 ZNF428Q96B54 188 aa12.8□□□□□ -0.36
UPF3B-201ENST00000276201 TMOD3Q9NYL9 352 aa12.8□□□□□ -0.36
UPF3B-201ENST00000276201 PSDA5PKW4 1024 aaPredicted RBP12.79□□□□□ -0.36
UPF3B-201ENST00000276201 ERVV-2B6SEH9 535 aa12.79□□□□□ -0.36
UPF3B-201ENST00000276201 MFAP1P55081 439 aaKnown RBP12.79□□□□□ -0.36
UPF3B-201ENST00000276201 PPP1R9BQ96SB3 815 aa12.79□□□□□ -0.36
UPF3B-201ENST00000276201 LRRC4BQ9NT99 713 aa12.79□□□□□ -0.36
UPF3B-201ENST00000276201 ZBTB40Q9NUA8 1239 aa12.79□□□□□ -0.36
UPF3B-201ENST00000276201 ADAMTS7Q9UKP4 1686 aa12.79□□□□□ -0.36
UPF3B-201ENST00000276201 R3HDM1Q15032 1099 aaKnown RBP12.79□□□□□ -0.36
UPF3B-201ENST00000276201 ALDH1L2Q3SY69 923 aa12.79□□□□□ -0.36
UPF3B-201ENST00000276201 BMP2KLQ5H9B9 411 aa12.79□□□□□ -0.36
UPF3B-201ENST00000276201 CHMP4BQ9H444 224 aaKnown RBP12.79□□□□□ -0.36
UPF3B-201ENST00000276201 PALLDQ8WX93 1383 aa12.78□□□□□ -0.36
UPF3B-201ENST00000276201 TRIM27P14373 513 aa12.78□□□□□ -0.36
UPF3B-201ENST00000276201 HSP90AA2PQ14568 343 aaPredicted RBP12.78□□□□□ -0.36
UPF3B-201ENST00000276201 IPO8O15397 1037 aaKnown RBP12.78□□□□□ -0.36
UPF3B-201ENST00000276201 KCNQ4P56696 695 aa12.78□□□□□ -0.36
UPF3B-201ENST00000276201 SLC27A3Q5K4L6 730 aa12.78□□□□□ -0.36
UPF3B-201ENST00000276201 NBPF14Q5TI25 921 aa12.78□□□□□ -0.36
UPF3B-201ENST00000276201 GAS2L2Q8NHY3 880 aa12.78□□□□□ -0.36
UPF3B-201ENST00000276201 TNPO1Q92973 898 aaKnown RBP12.78□□□□□ -0.36
UPF3B-201ENST00000276201 PLEKHF1Q96S99 279 aa12.78□□□□□ -0.36
UPF3B-201ENST00000276201 LGR6Q9HBX8 967 aa12.78□□□□□ -0.36
UPF3B-201ENST00000276201 RRP7AQ9Y3A4 280 aaKnown RBP12.78□□□□□ -0.36
UPF3B-201ENST00000276201 MRC1P22897 1456 aa12.78□□□□□ -0.36
UPF3B-201ENST00000276201 MAP3K5Q99683 1374 aa12.77□□□□□ -0.36
UPF3B-201ENST00000276201 CCDC173Q0VFZ6 552 aa12.77□□□□□ -0.36
UPF3B-201ENST00000276201 ASAP1Q9ULH1 1129 aa12.77□□□□□ -0.36
UPF3B-201ENST00000276201 RNMTO43148 476 aaKnown RBP12.77□□□□□ -0.37
UPF3B-201ENST00000276201 CABP4P57796 275 aa12.77□□□□□ -0.37
UPF3B-201ENST00000276201 CFAP44Q96MT7 982 aa12.77□□□□□ -0.37
UPF3B-201ENST00000276201 HS1BP3Q53T59 392 aa12.76□□□□□ -0.37
UPF3B-201ENST00000276201 SMARCC1Q92922 1105 aaPredicted RBP12.76□□□□□ -0.37
UPF3B-201ENST00000276201 ATG3Q9NT62 314 aa12.76□□□□□ -0.37
UPF3B-201ENST00000276201 CCNL1Q9UK58 526 aaPredicted RBP12.76□□□□□ -0.37
UPF3B-201ENST00000276201 GZF1Q9H116 711 aaPredicted RBP12.76□□□□□ -0.37
UPF3B-201ENST00000276201 SMC4Q9NTJ3 1288 aa12.76□□□□□ -0.37
UPF3B-201ENST00000276201 GNAT3A8MTJ3 354 aa12.75□□□□□ -0.37
UPF3B-201ENST00000276201 NFATC2IPQ8NCF5 419 aa12.75□□□□□ -0.37
UPF3B-201ENST00000276201 TMPOP42166 694 aaKnown RBP12.74□□□□□ -0.37
UPF3B-201ENST00000276201 NEUROD2Q15784 382 aa12.74□□□□□ -0.37
UPF3B-201ENST00000276201 ZNF827Q17R98 1081 aa12.74□□□□□ -0.37
UPF3B-201ENST00000276201 SSH1Q8WYL5 1049 aa12.74□□□□□ -0.37
UPF3B-201ENST00000276201 GCC1Q96CN9 775 aa12.74□□□□□ -0.37
UPF3B-201ENST00000276201 SLC52A2Q9HAB3 445 aa12.74□□□□□ -0.37
UPF3B-201ENST00000276201 STK32BQ9NY57 414 aa12.74□□□□□ -0.37
UPF3B-201ENST00000276201 ERBB4Q15303 1308 aa12.74□□□□□ -0.37
UPF3B-201ENST00000276201 EXOSC9Q06265 439 aaKnown RBP12.74□□□□□ -0.37
UPF3B-201ENST00000276201 TRIM44Q96DX7 344 aaPredicted RBP12.74□□□□□ -0.37
UPF3B-201ENST00000276201 KIF2CQ99661 725 aa12.74□□□□□ -0.37
UPF3B-201ENST00000276201 BCL2L13Q9BXK5 485 aa12.74□□□□□ -0.37
UPF3B-201ENST00000276201 TRIM35Q9UPQ4 493 aa12.74□□□□□ -0.37
UPF3B-201ENST00000276201 C5P01031 1676 aa12.74□□□□□ -0.37
UPF3B-201ENST00000276201 SLC15A2Q16348 729 aa12.73□□□□□ -0.37
UPF3B-201ENST00000276201 CHD1LQ86WJ1 897 aa12.73□□□□□ -0.37
UPF3B-201ENST00000276201 IL17REQ8NFR9 667 aa12.73□□□□□ -0.37
UPF3B-201ENST00000276201 ARHGAP45Q92619 1136 aa12.73□□□□□ -0.37
UPF3B-201ENST00000276201 AKT1S1Q96B36 256 aa12.73□□□□□ -0.37
UPF3B-201ENST00000276201 TAF1LQ8IZX4 1826 aa12.73□□□□□ -0.37
UPF3B-201ENST00000276201 LOC102724428A0A0B4J2F2 783 aa12.73□□□□□ -0.37
UPF3B-201ENST00000276201 SIK1P57059 783 aa12.73□□□□□ -0.37
UPF3B-201ENST00000276201 CASZ1Q86V15 1759 aa12.73□□□□□ -0.37
UPF3B-201ENST00000276201 CEMIPQ8WUJ3 1361 aa12.72□□□□□ -0.37
UPF3B-201ENST00000276201 K7ELQ4 463 aaPredicted RBP12.72□□□□□ -0.37
UPF3B-201ENST00000276201 KLHL40Q2TBA0 621 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms