RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 CCDC87Q9NVE4 849 aa16.62■□□□□ 0.25
SS18-202ENST00000269138 IL16Q14005 1332 aa16.61■□□□□ 0.25
SS18-202ENST00000269138 PHF14O94880 888 aa16.61■□□□□ 0.25
SS18-202ENST00000269138 STARD3NLO95772 234 aa16.61■□□□□ 0.25
SS18-202ENST00000269138 A1BGP04217 495 aa16.61■□□□□ 0.25
SS18-202ENST00000269138 HMGB2P26583 209 aaKnown RBP16.61■□□□□ 0.25
SS18-202ENST00000269138 COL23A1Q86Y22 540 aaPredicted RBP16.61■□□□□ 0.25
SS18-202ENST00000269138 COL5A3P25940 1745 aaPredicted RBP16.6■□□□□ 0.25
SS18-202ENST00000269138 RPS6KA4O75676 772 aa16.6■□□□□ 0.25
SS18-202ENST00000269138 ZBTB1Q9Y2K1 713 aa16.6■□□□□ 0.25
SS18-202ENST00000269138 CICQ96RK0 1608 aaPredicted RBP16.6■□□□□ 0.25
SS18-202ENST00000269138 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.6■□□□□ 0.25
SS18-202ENST00000269138 CANXP27824 592 aaKnown RBP16.6■□□□□ 0.25
SS18-202ENST00000269138 PIP4K2AP48426 406 aaPredicted RBP16.6■□□□□ 0.25
SS18-202ENST00000269138 MYH14Q7Z406 1995 aaKnown RBP16.59■□□□□ 0.25
SS18-202ENST00000269138 RTCBQ9Y3I0 505 aaKnown RBP16.59■□□□□ 0.25
SS18-202ENST00000269138 TUBGCP6Q96RT7 1819 aa16.58■□□□□ 0.25
SS18-202ENST00000269138 MSH5O43196 834 aa16.58■□□□□ 0.24
SS18-202ENST00000269138 HNRNPUQ00839 825 aaKnown RBP eCLIP16.58■□□□□ 0.24
SS18-202ENST00000269138 C8orf58Q8NAV2 365 aa16.58■□□□□ 0.24
SS18-202ENST00000269138 SOS1Q07889 1333 aaPredicted RBP16.57■□□□□ 0.24
SS18-202ENST00000269138 ELL2O00472 640 aaPredicted RBP16.57■□□□□ 0.24
SS18-202ENST00000269138 EIF2S2P20042 333 aaKnown RBP16.57■□□□□ 0.24
SS18-202ENST00000269138 SSFA2P28290 1259 aa16.57■□□□□ 0.24
SS18-202ENST00000269138 DUSP27Q5VZP5 1158 aa16.57■□□□□ 0.24
SS18-202ENST00000269138 FANCIQ9NVI1 1328 aa16.57■□□□□ 0.24
SS18-202ENST00000269138 NBPF26B4DH59 902 aa16.56■□□□□ 0.24
SS18-202ENST00000269138 ZBTB7AO95365 584 aa16.56■□□□□ 0.24
SS18-202ENST00000269138 TRAPPC3LQ5T215 181 aa16.56■□□□□ 0.24
SS18-202ENST00000269138 NBPF10Q6P3W6 841 aaKnown RBP16.56■□□□□ 0.24
SS18-202ENST00000269138 NBPF15Q8N660 670 aa16.56■□□□□ 0.24
SS18-202ENST00000269138 TSPYL6Q8N831 410 aa16.56■□□□□ 0.24
SS18-202ENST00000269138 NECTIN2Q92692 538 aa16.56■□□□□ 0.24
SS18-202ENST00000269138 ARHGEF1Q92888 912 aaKnown RBP16.56■□□□□ 0.24
SS18-202ENST00000269138 UBR3Q6ZT12 1888 aa16.56■□□□□ 0.24
SS18-202ENST00000269138 FLAD1Q8NFF5 587 aa16.55■□□□□ 0.24
SS18-202ENST00000269138 CDCA7LQ96GN5 454 aa16.55■□□□□ 0.24
SS18-202ENST00000269138 EIF5P55010 431 aaKnown RBP16.55■□□□□ 0.24
SS18-202ENST00000269138 GOLGA2Q08379 1002 aa16.55■□□□□ 0.24
SS18-202ENST00000269138 ZNF330Q9Y3S2 320 aaPredicted RBP16.55■□□□□ 0.24
SS18-202ENST00000269138 CASZ1Q86V15 1759 aa16.54■□□□□ 0.24
SS18-202ENST00000269138 ADRA2BP18089 450 aa16.54■□□□□ 0.24
SS18-202ENST00000269138 SRP68Q9UHB9 627 aaKnown RBP16.54■□□□□ 0.24
SS18-202ENST00000269138 ATF5Q9Y2D1 282 aaPredicted RBP16.54■□□□□ 0.24
SS18-202ENST00000269138 RFC4P35249 363 aa16.53■□□□□ 0.24
SS18-202ENST00000269138 IL6STP40189 918 aaPredicted RBP16.53■□□□□ 0.24
SS18-202ENST00000269138 EXOSC9Q06265 439 aaKnown RBP16.53■□□□□ 0.24
SS18-202ENST00000269138 SLFN5Q08AF3 891 aa16.53■□□□□ 0.24
SS18-202ENST00000269138 MYH16Q9H6N6 1097 aa16.53■□□□□ 0.24
SS18-202ENST00000269138 QSER1Q2KHR3 1735 aa16.52■□□□□ 0.24
SS18-202ENST00000269138 COL15A1P39059 1388 aa16.52■□□□□ 0.24
SS18-202ENST00000269138 ANXA1P04083 346 aa16.52■□□□□ 0.24
SS18-202ENST00000269138 HOXB7P09629 217 aa16.52■□□□□ 0.24
SS18-202ENST00000269138 PDIA6Q15084 440 aa16.52■□□□□ 0.24
SS18-202ENST00000269138 PROSER3Q2NL68 480 aa16.52■□□□□ 0.24
SS18-202ENST00000269138 HDGFL1Q5TGJ6 251 aa16.52■□□□□ 0.24
SS18-202ENST00000269138 MSL1Q68DK7 614 aa16.52■□□□□ 0.24
SS18-202ENST00000269138 E9PSI1 815 aa16.51■□□□□ 0.23
SS18-202ENST00000269138 MYL6BP14649 208 aa16.51■□□□□ 0.23
SS18-202ENST00000269138 SLC16A10Q8TF71 515 aa16.51■□□□□ 0.23
SS18-202ENST00000269138 MTFR1LQ9H019 292 aa16.5■□□□□ 0.23
SS18-202ENST00000269138 TBC1D2BQ9UPU7 963 aa16.5■□□□□ 0.23
SS18-202ENST00000269138 LAMB4A4D0S4 1761 aa16.5■□□□□ 0.23
SS18-202ENST00000269138 TWISTNBQ3B726 338 aaPredicted RBP16.5■□□□□ 0.23
SS18-202ENST00000269138 USPL1Q5W0Q7 1092 aa16.5■□□□□ 0.23
SS18-202ENST00000269138 LRP10Q7Z4F1 713 aa16.5■□□□□ 0.23
SS18-202ENST00000269138 ARXQ96QS3 562 aa16.5■□□□□ 0.23
SS18-202ENST00000269138 CHPF2Q9P2E5 772 aa16.5■□□□□ 0.23
SS18-202ENST00000269138 USP42Q9H9J4 1324 aaKnown RBP16.49■□□□□ 0.23
SS18-202ENST00000269138 A0A087WZG4 1122 aa16.49■□□□□ 0.23
SS18-202ENST00000269138 TCERG1O14776 1098 aaKnown RBP16.49■□□□□ 0.23
SS18-202ENST00000269138 GYS1P13807 737 aa16.49■□□□□ 0.23
SS18-202ENST00000269138 TRMT2AQ8IZ69 625 aaKnown RBP16.49■□□□□ 0.23
SS18-202ENST00000269138 NARFQ9UHQ1 456 aa16.49■□□□□ 0.23
SS18-202ENST00000269138 ERBB4Q15303 1308 aa16.48■□□□□ 0.23
SS18-202ENST00000269138 ZPR1O75312 459 aa16.48■□□□□ 0.23
SS18-202ENST00000269138 VAMP4O75379 141 aa16.48■□□□□ 0.23
SS18-202ENST00000269138 PTGER2P43116 358 aa16.48■□□□□ 0.23
SS18-202ENST00000269138 DZIP3Q86Y13 1208 aaKnown RBP16.48■□□□□ 0.23
SS18-202ENST00000269138 BCL2L12Q9HB09 334 aa16.48■□□□□ 0.23
SS18-202ENST00000269138 SPON1Q9HCB6 807 aa16.48■□□□□ 0.23
SS18-202ENST00000269138 FKBP8Q14318 412 aa16.47■□□□□ 0.23
SS18-202ENST00000269138 TTLL7Q6ZT98 887 aa16.47■□□□□ 0.23
SS18-202ENST00000269138 NPM2Q86SE8 214 aaKnown RBP16.47■□□□□ 0.23
SS18-202ENST00000269138 DDX21Q9NR30 783 aaKnown RBP eCLIP16.47■□□□□ 0.23
SS18-202ENST00000269138 C4AP0C0L4 1744 aa16.46■□□□□ 0.23
SS18-202ENST00000269138 CAMTA2O94983 1202 aa16.46■□□□□ 0.23
SS18-202ENST00000269138 SGIP1Q9BQI5 828 aa16.46■□□□□ 0.23
SS18-202ENST00000269138 ZBED9Q6R2W3 1325 aa16.46■□□□□ 0.23
SS18-202ENST00000269138 CCDC30Q5VVM6 783 aa16.45■□□□□ 0.22
SS18-202ENST00000269138 XAGE3Q8WTP9 111 aa16.45■□□□□ 0.22
SS18-202ENST00000269138 DBF4Q9UBU7 674 aaPredicted RBP16.45■□□□□ 0.22
SS18-202ENST00000269138 AIMP1Q12904 312 aaKnown RBP16.45■□□□□ 0.22
SS18-202ENST00000269138 COPS6Q7L5N1 327 aa16.45■□□□□ 0.22
SS18-202ENST00000269138 NLGN1Q8N2Q7 840 aa16.44■□□□□ 0.22
SS18-202ENST00000269138 MMP10P09238 476 aa16.43■□□□□ 0.22
SS18-202ENST00000269138 HLFQ16534 295 aa16.43■□□□□ 0.22
SS18-202ENST00000269138 ZBTB3Q9H5J0 574 aa16.43■□□□□ 0.22
SS18-202ENST00000269138 PHAXQ9H814 394 aaKnown RBP16.43■□□□□ 0.22
SS18-202ENST00000269138 HYPKQ9NX55 129 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms