RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 CWC27Q6UX04 472 aaKnown RBP17.22■□□□□ 0.35
SDC1-201ENST00000254351 LRRCC1Q9C099 1032 aa17.22■□□□□ 0.35
SDC1-201ENST00000254351 GTF2E1P29083 439 aaPredicted RBP17.21■□□□□ 0.35
SDC1-201ENST00000254351 AK2P54819 239 aa17.21■□□□□ 0.35
SDC1-201ENST00000254351 NCBP1Q09161 790 aaKnown RBP17.21■□□□□ 0.35
SDC1-201ENST00000254351 SYTL4Q96C24 671 aaPredicted RBP17.21■□□□□ 0.35
SDC1-201ENST00000254351 MCM2P49736 904 aa17.21■□□□□ 0.35
SDC1-201ENST00000254351 RASEFQ8IZ41 740 aa17.21■□□□□ 0.35
SDC1-201ENST00000254351 TRIM5Q9C035 493 aa17.21■□□□□ 0.35
SDC1-201ENST00000254351 SPTLC3Q9NUV7 552 aa17.21■□□□□ 0.35
SDC1-201ENST00000254351 STAG3Q9UJ98 1225 aa17.21■□□□□ 0.35
SDC1-201ENST00000254351 ADAMTSL3P82987 1691 aa17.21■□□□□ 0.35
SDC1-201ENST00000254351 A2ML1A8K2U0 1454 aa17.21■□□□□ 0.35
SDC1-201ENST00000254351 FOXO3O43524 673 aa17.21■□□□□ 0.34
SDC1-201ENST00000254351 KIF20AO95235 890 aa17.21■□□□□ 0.34
SDC1-201ENST00000254351 CEBPAP49715 358 aaPredicted RBP17.21■□□□□ 0.34
SDC1-201ENST00000254351 UBE2HP62256 183 aa17.21■□□□□ 0.34
SDC1-201ENST00000254351 UVSSAQ2YD98 709 aa17.21■□□□□ 0.34
SDC1-201ENST00000254351 TCEANC2Q96MN5 208 aa17.21■□□□□ 0.34
SDC1-201ENST00000254351 IL13P35225 146 aa17.2■□□□□ 0.34
SDC1-201ENST00000254351 TFIP11Q9UBB9 837 aaKnown RBP17.2■□□□□ 0.34
SDC1-201ENST00000254351 ZFYVE9O95405 1425 aa17.2■□□□□ 0.34
SDC1-201ENST00000254351 TNNT1P13805 278 aa17.2■□□□□ 0.34
SDC1-201ENST00000254351 KNDC1Q76NI1 1749 aa17.2■□□□□ 0.34
SDC1-201ENST00000254351 ZBTB9Q96C00 473 aa17.19■□□□□ 0.34
SDC1-201ENST00000254351 ST7Q9NRC1 585 aa17.19■□□□□ 0.34
SDC1-201ENST00000254351 CASTP20810 708 aaKnown RBP17.19■□□□□ 0.34
SDC1-201ENST00000254351 TPD52L1Q16890 204 aaPredicted RBP17.19■□□□□ 0.34
SDC1-201ENST00000254351 FAM135BQ49AJ0 1406 aa17.19■□□□□ 0.34
SDC1-201ENST00000254351 A0A087WWV3 80 aa17.19■□□□□ 0.34
SDC1-201ENST00000254351 RTF1Q92541 710 aaKnown RBP17.19■□□□□ 0.34
SDC1-201ENST00000254351 INTS4Q96HW7 963 aaKnown RBP17.19■□□□□ 0.34
SDC1-201ENST00000254351 RPAP1Q9BWH6 1393 aaPredicted RBP17.18■□□□□ 0.34
SDC1-201ENST00000254351 GJB2P29033 226 aa17.18■□□□□ 0.34
SDC1-201ENST00000254351 KCNJ4P48050 445 aa17.18■□□□□ 0.34
SDC1-201ENST00000254351 TRMT1Q9NXH9 659 aaKnown RBP17.18■□□□□ 0.34
SDC1-201ENST00000254351 RIMS1Q86UR5 1692 aaKnown RBP17.18■□□□□ 0.34
SDC1-201ENST00000254351 F13A1P00488 732 aa17.18■□□□□ 0.34
SDC1-201ENST00000254351 ARID5BQ14865 1188 aa17.17■□□□□ 0.34
SDC1-201ENST00000254351 CDK11BP21127 795 aaKnown RBP17.17■□□□□ 0.34
SDC1-201ENST00000254351 RUFY3Q7L099 469 aa17.17■□□□□ 0.34
SDC1-201ENST00000254351 LRRFIP2Q9Y608 721 aaKnown RBP17.17■□□□□ 0.34
SDC1-201ENST00000254351 RIMS2Q9UQ26 1411 aa17.16■□□□□ 0.34
SDC1-201ENST00000254351 GOLGA6L6A8MZA4 724 aa17.16■□□□□ 0.34
SDC1-201ENST00000254351 GNAI2P04899 355 aa17.16■□□□□ 0.34
SDC1-201ENST00000254351 LIG1P18858 919 aa17.16■□□□□ 0.34
SDC1-201ENST00000254351 ADGRB1O14514 1584 aa17.16■□□□□ 0.34
SDC1-201ENST00000254351 CCDC192P0DO97 292 aa17.16■□□□□ 0.34
SDC1-201ENST00000254351 FOSBP53539 338 aa17.16■□□□□ 0.34
SDC1-201ENST00000254351 CEBPZQ03701 1054 aaKnown RBP17.16■□□□□ 0.34
SDC1-201ENST00000254351 LMOD3Q0VAK6 560 aa17.16■□□□□ 0.34
SDC1-201ENST00000254351 GOLGA6L4A6NEF3 574 aa17.15■□□□□ 0.34
SDC1-201ENST00000254351 PPFIA3O75145 1194 aa17.15■□□□□ 0.34
SDC1-201ENST00000254351 ANO6Q4KMQ2 910 aa17.15■□□□□ 0.34
SDC1-201ENST00000254351 ANKRD7Q92527 254 aa17.15■□□□□ 0.34
SDC1-201ENST00000254351 CCDC112Q8NEF3 446 aa17.15■□□□□ 0.34
SDC1-201ENST00000254351 SNX14Q9Y5W7 946 aa17.15■□□□□ 0.34
SDC1-201ENST00000254351 STK3Q13188 491 aa17.14■□□□□ 0.34
SDC1-201ENST00000254351 TSPYL4Q9UJ04 414 aa17.14■□□□□ 0.34
SDC1-201ENST00000254351 SURF6O75683 361 aaKnown RBP17.14■□□□□ 0.33
SDC1-201ENST00000254351 COL9A3Q14050 684 aaPredicted RBP17.14■□□□□ 0.33
SDC1-201ENST00000254351 SETBP1Q9Y6X0 1596 aa17.14■□□□□ 0.33
SDC1-201ENST00000254351 UBR1Q8IWV7 1749 aa17.13■□□□□ 0.33
SDC1-201ENST00000254351 PNPLA6Q8IY17 1366 aa17.13■□□□□ 0.33
SDC1-201ENST00000254351 USP27XA6NNY8 438 aa17.13■□□□□ 0.33
SDC1-201ENST00000254351 ADCK5Q3MIX3 580 aa17.13■□□□□ 0.33
SDC1-201ENST00000254351 JAKMIP1Q96N16 626 aaKnown RBP17.13■□□□□ 0.33
SDC1-201ENST00000254351 DACT1Q9NYF0 836 aa17.13■□□□□ 0.33
SDC1-201ENST00000254351 TMEM51Q9NW97 253 aa17.13■□□□□ 0.33
SDC1-201ENST00000254351 PRPF40BQ6NWY9 871 aaKnown RBP17.12■□□□□ 0.33
SDC1-201ENST00000254351 PLPPR3Q6T4P5 718 aa17.12■□□□□ 0.33
SDC1-201ENST00000254351 FILIP1Q7Z7B0 1213 aa17.12■□□□□ 0.33
SDC1-201ENST00000254351 COG3Q96JB2 828 aa17.12■□□□□ 0.33
SDC1-201ENST00000254351 DNAJC25Q9H1X3 360 aa17.12■□□□□ 0.33
SDC1-201ENST00000254351 OGFRQ9NZT2 677 aa17.12■□□□□ 0.33
SDC1-201ENST00000254351 TYRO3Q06418 890 aa17.12■□□□□ 0.33
SDC1-201ENST00000254351 PDE4CQ08493 712 aa17.12■□□□□ 0.33
SDC1-201ENST00000254351 CTNNA3Q9UI47 895 aa17.12■□□□□ 0.33
SDC1-201ENST00000254351 LIMCH1Q9UPQ0 1083 aa17.12■□□□□ 0.33
SDC1-201ENST00000254351 FUCA2Q9BTY2 467 aa17.12■□□□□ 0.33
SDC1-201ENST00000254351 NUP62CLQ9H1M0 184 aa17.12■□□□□ 0.33
SDC1-201ENST00000254351 TNMDQ9H2S6 317 aa17.12■□□□□ 0.33
SDC1-201ENST00000254351 RGS12O14924 1447 aa17.11■□□□□ 0.33
SDC1-201ENST00000254351 HSPA4P34932 840 aa17.11■□□□□ 0.33
SDC1-201ENST00000254351 TTC6Q86TZ1 520 aa17.11■□□□□ 0.33
SDC1-201ENST00000254351 ERCC4Q92889 916 aaPredicted RBP17.11■□□□□ 0.33
SDC1-201ENST00000254351 CBX8Q9HC52 389 aa17.11■□□□□ 0.33
SDC1-201ENST00000254351 TAOK2Q9UL54 1235 aa17.11■□□□□ 0.33
SDC1-201ENST00000254351 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.11■□□□□ 0.33
SDC1-201ENST00000254351 MAP3K11Q16584 847 aa17.1■□□□□ 0.33
SDC1-201ENST00000254351 CACTINQ8WUQ7 758 aaKnown RBP17.1■□□□□ 0.33
SDC1-201ENST00000254351 MRVI1Q9Y6F6 885 aa17.1■□□□□ 0.33
SDC1-201ENST00000254351 YTHDC2Q9H6S0 1430 aaKnown RBP17.1■□□□□ 0.33
SDC1-201ENST00000254351 CCDC144BQ3MJ40 725 aa17.1■□□□□ 0.33
SDC1-201ENST00000254351 LARP1BQ659C4 914 aaKnown RBP17.1■□□□□ 0.33
SDC1-201ENST00000254351 CCDC144CPQ8IYA2 1237 aa17.1■□□□□ 0.33
SDC1-201ENST00000254351 OSBPL3Q9H4L5 887 aa17.1■□□□□ 0.33
SDC1-201ENST00000254351 CLIP2Q9UDT6 1046 aa17.1■□□□□ 0.33
SDC1-201ENST00000254351 MTMR6Q9Y217 621 aa17.1■□□□□ 0.33
SDC1-201ENST00000254351 MYO3AQ8NEV4 1616 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms