RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 ERVK-7P63135 1459 aa5.45□□□□□ -1.54
VPS13C-201ENST00000249837 FSIP1Q8NA03 581 aa5.45□□□□□ -1.54
VPS13C-201ENST00000249837 ECHDC1Q9NTX5 307 aa5.45□□□□□ -1.54
VPS13C-201ENST00000249837 ACEP12821 1306 aa5.45□□□□□ -1.54
VPS13C-201ENST00000249837 PPIP5K1Q6PFW1 1433 aa5.45□□□□□ -1.54
VPS13C-201ENST00000249837 ASXL2Q76L83 1435 aa5.45□□□□□ -1.54
VPS13C-201ENST00000249837 SPDYE4A6NLX3 237 aa5.45□□□□□ -1.54
VPS13C-201ENST00000249837 RRP12Q5JTH9 1297 aaKnown RBP5.45□□□□□ -1.54
VPS13C-201ENST00000249837 TRMT1Q9NXH9 659 aaKnown RBP5.45□□□□□ -1.54
VPS13C-201ENST00000249837 PPP6R1Q9UPN7 881 aa5.45□□□□□ -1.54
VPS13C-201ENST00000249837 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.45□□□□□ -1.54
VPS13C-201ENST00000249837 TTC21BQ7Z4L5 1316 aa5.45□□□□□ -1.54
VPS13C-201ENST00000249837 ZSCAN22P10073 491 aaPredicted RBP5.45□□□□□ -1.54
VPS13C-201ENST00000249837 GJB2P29033 226 aa5.45□□□□□ -1.54
VPS13C-201ENST00000249837 ZKSCAN5Q9Y2L8 839 aa5.45□□□□□ -1.54
VPS13C-201ENST00000249837 TSR1Q2NL82 804 aaKnown RBP5.45□□□□□ -1.54
VPS13C-201ENST00000249837 RAB11FIP4Q86YS3 637 aa5.45□□□□□ -1.54
VPS13C-201ENST00000249837 TATP17735 454 aaPredicted RBP5.45□□□□□ -1.54
VPS13C-201ENST00000249837 RBM25P49756 843 aaKnown RBP5.45□□□□□ -1.54
VPS13C-201ENST00000249837 ANTXR1Q9H6X2 564 aa5.45□□□□□ -1.54
VPS13C-201ENST00000249837 SH2B1Q9NRF2 756 aaPredicted RBP5.45□□□□□ -1.54
VPS13C-201ENST00000249837 CHMLP26374 656 aa5.45□□□□□ -1.54
VPS13C-201ENST00000249837 PDE4CQ08493 712 aa5.45□□□□□ -1.54
VPS13C-201ENST00000249837 CHPF2Q9P2E5 772 aa5.45□□□□□ -1.54
VPS13C-201ENST00000249837 MAP3K2Q9Y2U5 619 aa5.45□□□□□ -1.54
VPS13C-201ENST00000249837 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.45□□□□□ -1.54
VPS13C-201ENST00000249837 FSD2A1L4K1 749 aa5.45□□□□□ -1.54
VPS13C-201ENST00000249837 THEMISQ8N1K5 641 aaPredicted RBP5.45□□□□□ -1.54
VPS13C-201ENST00000249837 AMOTL2Q9Y2J4 779 aa5.45□□□□□ -1.54
VPS13C-201ENST00000249837 SYNMO15061 1565 aa5.45□□□□□ -1.54
VPS13C-201ENST00000249837 PRDM15P57071 1507 aaPredicted RBP5.44□□□□□ -1.54
VPS13C-201ENST00000249837 BIN1O00499 593 aa5.44□□□□□ -1.54
VPS13C-201ENST00000249837 NOLC1Q14978 699 aaKnown RBP eCLIP5.44□□□□□ -1.54
VPS13C-201ENST00000249837 SNRKQ9NRH2 765 aa5.44□□□□□ -1.54
VPS13C-201ENST00000249837 PA2G4Q9UQ80 394 aaKnown RBP5.44□□□□□ -1.54
VPS13C-201ENST00000249837 UBE2HP62256 183 aa5.44□□□□□ -1.54
VPS13C-201ENST00000249837 KRT32Q14532 448 aa5.44□□□□□ -1.54
VPS13C-201ENST00000249837 ABCA8O94911 1581 aa5.44□□□□□ -1.54
VPS13C-201ENST00000249837 ABCC1P33527 1531 aa5.44□□□□□ -1.54
VPS13C-201ENST00000249837 HOOK1Q9UJC3 728 aaKnown RBP5.44□□□□□ -1.54
VPS13C-201ENST00000249837 IL13P35225 146 aa5.44□□□□□ -1.54
VPS13C-201ENST00000249837 PUS7Q96PZ0 661 aaKnown RBP5.44□□□□□ -1.54
VPS13C-201ENST00000249837 DNM1Q05193 864 aaKnown RBP5.44□□□□□ -1.54
VPS13C-201ENST00000249837 MCM5P33992 734 aa5.44□□□□□ -1.54
VPS13C-201ENST00000249837 TTC39AQ5SRH9 613 aa5.44□□□□□ -1.54
VPS13C-201ENST00000249837 TSC1Q92574 1164 aa5.44□□□□□ -1.54
VPS13C-201ENST00000249837 C16orf45Q96MC5 204 aaPredicted RBP5.44□□□□□ -1.54
VPS13C-201ENST00000249837 BRPF1P55201 1214 aaPredicted RBP5.44□□□□□ -1.54
VPS13C-201ENST00000249837 TYRO3Q06418 890 aa5.44□□□□□ -1.54
VPS13C-201ENST00000249837 PPP4R3BQ5MIZ7 849 aa5.44□□□□□ -1.54
VPS13C-201ENST00000249837 ISM2Q6H9L7 571 aa5.44□□□□□ -1.54
VPS13C-201ENST00000249837 PROSER2Q86WR7 435 aaPredicted RBP5.44□□□□□ -1.54
VPS13C-201ENST00000249837 MTHFSDQ2M296 383 aaKnown RBP5.43□□□□□ -1.54
VPS13C-201ENST00000249837 ATP7AQ04656 1500 aa5.43□□□□□ -1.54
VPS13C-201ENST00000249837 NOC3LQ8WTT2 800 aaKnown RBP5.43□□□□□ -1.54
VPS13C-201ENST00000249837 CEP126Q9P2H0 1117 aa5.43□□□□□ -1.54
VPS13C-201ENST00000249837 MTMR7Q9Y216 660 aa5.43□□□□□ -1.54
VPS13C-201ENST00000249837 DYNC1I1O14576 645 aa5.43□□□□□ -1.54
VPS13C-201ENST00000249837 TMEM63CQ9P1W3 806 aa5.43□□□□□ -1.54
VPS13C-201ENST00000249837 FAM173BQ6P4H8 233 aa5.43□□□□□ -1.54
VPS13C-201ENST00000249837 LARP1Q6PKG0 1096 aaKnown RBP5.43□□□□□ -1.54
VPS13C-201ENST00000249837 CEP57L1Q8IYX8 460 aa5.43□□□□□ -1.54
VPS13C-201ENST00000249837 SYTL4Q96C24 671 aaPredicted RBP5.43□□□□□ -1.54
VPS13C-201ENST00000249837 TRERF1Q96PN7 1200 aa5.43□□□□□ -1.54
VPS13C-201ENST00000249837 TTC37Q6PGP7 1564 aa5.43□□□□□ -1.54
VPS13C-201ENST00000249837 YTHDC2Q9H6S0 1430 aaKnown RBP5.43□□□□□ -1.54
VPS13C-201ENST00000249837 ERICH4A6NGS2 130 aa5.43□□□□□ -1.54
VPS13C-201ENST00000249837 TNNT1P13805 278 aa5.43□□□□□ -1.54
VPS13C-201ENST00000249837 GSPT1P15170 499 aaKnown RBP5.43□□□□□ -1.54
VPS13C-201ENST00000249837 PTPN14Q15678 1187 aa5.43□□□□□ -1.54
VPS13C-201ENST00000249837 RBM8AQ9Y5S9 174 aaKnown RBP5.43□□□□□ -1.54
VPS13C-201ENST00000249837 MSH6P52701 1360 aa5.43□□□□□ -1.54
VPS13C-201ENST00000249837 CFAP45Q9UL16 551 aa5.43□□□□□ -1.54
VPS13C-201ENST00000249837 NMIQ13287 307 aaPredicted RBP5.43□□□□□ -1.54
VPS13C-201ENST00000249837 UVSSAQ2YD98 709 aa5.43□□□□□ -1.54
VPS13C-201ENST00000249837 ANO6Q4KMQ2 910 aa5.43□□□□□ -1.54
VPS13C-201ENST00000249837 ATP5J2-PTCD1G3V325 749 aa5.43□□□□□ -1.54
VPS13C-201ENST00000249837 PTCD1O75127 700 aaKnown RBP5.43□□□□□ -1.54
VPS13C-201ENST00000249837 CABP4P57796 275 aa5.43□□□□□ -1.54
VPS13C-201ENST00000249837 ZNF445P59923 1031 aa5.43□□□□□ -1.54
VPS13C-201ENST00000249837 F13A1P00488 732 aa5.43□□□□□ -1.54
VPS13C-201ENST00000249837 PTGS1P23219 599 aa5.43□□□□□ -1.54
VPS13C-201ENST00000249837 ARGLU1Q9NWB6 273 aaPredicted RBP5.43□□□□□ -1.54
VPS13C-201ENST00000249837 MARCH6O60337 910 aa5.42□□□□□ -1.54
VPS13C-201ENST00000249837 ATF3P18847 181 aa5.42□□□□□ -1.54
VPS13C-201ENST00000249837 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.42□□□□□ -1.54
VPS13C-201ENST00000249837 PHF8Q9UPP1 1060 aa5.42□□□□□ -1.54
VPS13C-201ENST00000249837 V9GYY5 206 aaPredicted RBP5.42□□□□□ -1.54
VPS13C-201ENST00000249837 ANAPC15P60006 121 aa5.42□□□□□ -1.54
VPS13C-201ENST00000249837 HAND2P61296 217 aa5.42□□□□□ -1.54
VPS13C-201ENST00000249837 PKP1Q13835 747 aa5.42□□□□□ -1.54
VPS13C-201ENST00000249837 CCDC186Q7Z3E2 898 aa5.42□□□□□ -1.54
VPS13C-201ENST00000249837 CNNM1Q9NRU3 951 aa5.42□□□□□ -1.54
VPS13C-201ENST00000249837 ATP10AO60312 1499 aa5.42□□□□□ -1.54
VPS13C-201ENST00000249837 PALD1Q9ULE6 856 aa5.42□□□□□ -1.54
VPS13C-201ENST00000249837 RIMS2Q9UQ26 1411 aa5.42□□□□□ -1.54
VPS13C-201ENST00000249837 CROCC2H7BZ55 1655 aa5.42□□□□□ -1.54
VPS13C-201ENST00000249837 SERPINC1P01008 464 aa5.42□□□□□ -1.54
VPS13C-201ENST00000249837 CCDC57Q2TAC2 916 aa5.42□□□□□ -1.54
VPS13C-201ENST00000249837 ZNF165P49910 485 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms