RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 KIF16BQ96L93 1317 aa16.94■□□□□ 0.3
SLIRP-201ENST00000238688 YY1P25490 414 aa16.93■□□□□ 0.3
SLIRP-201ENST00000238688 POLD1P28340 1107 aa16.93■□□□□ 0.3
SLIRP-201ENST00000238688 MSL1Q68DK7 614 aa16.93■□□□□ 0.3
SLIRP-201ENST00000238688 CHMP4AQ9BY43 222 aa16.93■□□□□ 0.3
SLIRP-201ENST00000238688 MSH5O43196 834 aa16.92■□□□□ 0.3
SLIRP-201ENST00000238688 HSP90AB1P08238 724 aaKnown RBP16.92■□□□□ 0.3
SLIRP-201ENST00000238688 ATP6V1AP38606 617 aa16.92■□□□□ 0.3
SLIRP-201ENST00000238688 FLAD1Q8NFF5 587 aa16.92■□□□□ 0.3
SLIRP-201ENST00000238688 NLGN2Q8NFZ4 835 aa16.92■□□□□ 0.3
SLIRP-201ENST00000238688 ADAMTS7Q9UKP4 1686 aa16.91■□□□□ 0.3
SLIRP-201ENST00000238688 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.91■□□□□ 0.3
SLIRP-201ENST00000238688 GNAT3A8MTJ3 354 aa16.91■□□□□ 0.3
SLIRP-201ENST00000238688 IPO8O15397 1037 aaKnown RBP16.91■□□□□ 0.3
SLIRP-201ENST00000238688 HMGB2P26583 209 aaKnown RBP16.91■□□□□ 0.3
SLIRP-201ENST00000238688 AK7Q96M32 723 aa16.91■□□□□ 0.3
SLIRP-201ENST00000238688 DCAF8L1A6NGE4 600 aa16.9■□□□□ 0.3
SLIRP-201ENST00000238688 CHL1O00533 1208 aa16.9■□□□□ 0.3
SLIRP-201ENST00000238688 IRX6P78412 446 aaPredicted RBP16.9■□□□□ 0.3
SLIRP-201ENST00000238688 TJP1Q07157 1748 aa16.9■□□□□ 0.3
SLIRP-201ENST00000238688 CICQ96RK0 1608 aaPredicted RBP16.89■□□□□ 0.29
SLIRP-201ENST00000238688 SSFA2P28290 1259 aa16.89■□□□□ 0.29
SLIRP-201ENST00000238688 EXOSC9Q06265 439 aaKnown RBP16.89■□□□□ 0.29
SLIRP-201ENST00000238688 MTHFSDQ2M296 383 aaKnown RBP16.89■□□□□ 0.29
SLIRP-201ENST00000238688 CCDC136Q96JN2 1154 aa16.89■□□□□ 0.29
SLIRP-201ENST00000238688 PHF14O94880 888 aa16.88■□□□□ 0.29
SLIRP-201ENST00000238688 CANXP27824 592 aaKnown RBP16.88■□□□□ 0.29
SLIRP-201ENST00000238688 CABP4P57796 275 aa16.88■□□□□ 0.29
SLIRP-201ENST00000238688 C1orf141Q5JVX7 400 aa16.88■□□□□ 0.29
SLIRP-201ENST00000238688 KLHL34Q8N239 644 aa16.88■□□□□ 0.29
SLIRP-201ENST00000238688 NFATC2IPQ8NCF5 419 aa16.88■□□□□ 0.29
SLIRP-201ENST00000238688 ARHGAP45Q92619 1136 aa16.88■□□□□ 0.29
SLIRP-201ENST00000238688 LGR6Q9HBX8 967 aa16.88■□□□□ 0.29
SLIRP-201ENST00000238688 CEMIPQ8WUJ3 1361 aa16.88■□□□□ 0.29
SLIRP-201ENST00000238688 MRC1P22897 1456 aa16.87■□□□□ 0.29
SLIRP-201ENST00000238688 GNPATO15228 680 aa16.87■□□□□ 0.29
SLIRP-201ENST00000238688 AKAP4Q5JQC9 854 aa16.87■□□□□ 0.29
SLIRP-201ENST00000238688 TSR2Q969E8 191 aaKnown RBP16.87■□□□□ 0.29
SLIRP-201ENST00000238688 CHMP4BQ9H444 224 aaKnown RBP16.87■□□□□ 0.29
SLIRP-201ENST00000238688 MBIPQ9NS73 344 aa16.87■□□□□ 0.29
SLIRP-201ENST00000238688 C4AP0C0L4 1744 aa16.87■□□□□ 0.29
SLIRP-201ENST00000238688 ZKSCAN2Q63HK3 967 aa16.86■□□□□ 0.29
SLIRP-201ENST00000238688 RBM42Q9BTD8 480 aaKnown RBP16.86■□□□□ 0.29
SLIRP-201ENST00000238688 GOLGB1Q14789 3259 aaKnown RBP16.85■□□□□ 0.29
SLIRP-201ENST00000238688 BCAR3O75815 825 aa16.85■□□□□ 0.29
SLIRP-201ENST00000238688 RC3H1Q5TC82 1133 aaKnown RBP16.85■□□□□ 0.29
SLIRP-201ENST00000238688 RNMTO43148 476 aaKnown RBP16.84■□□□□ 0.29
SLIRP-201ENST00000238688 EXOC6Q8TAG9 804 aa16.84■□□□□ 0.29
SLIRP-201ENST00000238688 SMC4Q9NTJ3 1288 aa16.84■□□□□ 0.29
SLIRP-201ENST00000238688 CNTNAP4Q9C0A0 1308 aa16.84■□□□□ 0.29
SLIRP-201ENST00000238688 KDM3BQ7LBC6 1761 aa16.84■□□□□ 0.29
SLIRP-201ENST00000238688 KIF13BQ9NQT8 1826 aa16.84■□□□□ 0.29
SLIRP-201ENST00000238688 SIPA1L3O60292 1781 aaPredicted RBP16.83■□□□□ 0.28
SLIRP-201ENST00000238688 YBX3P16989 372 aaKnown RBP eCLIP16.83■□□□□ 0.28
SLIRP-201ENST00000238688 GPR162Q16538 588 aa16.83■□□□□ 0.28
SLIRP-201ENST00000238688 TWISTNBQ3B726 338 aaPredicted RBP16.83■□□□□ 0.28
SLIRP-201ENST00000238688 SLC52A2Q9HAB3 445 aa16.83■□□□□ 0.28
SLIRP-201ENST00000238688 KIAA1551Q9HCM1 1747 aa16.83■□□□□ 0.28
SLIRP-201ENST00000238688 CD2APQ9Y5K6 639 aa16.83■□□□□ 0.28
SLIRP-201ENST00000238688 UBR2Q8IWV8 1755 aa16.82■□□□□ 0.28
SLIRP-201ENST00000238688 PLIN1O60240 522 aa16.82■□□□□ 0.28
SLIRP-201ENST00000238688 PTCD1O75127 700 aaKnown RBP16.82■□□□□ 0.28
SLIRP-201ENST00000238688 VAMP4O75379 141 aa16.82■□□□□ 0.28
SLIRP-201ENST00000238688 HOXB7P09629 217 aa16.82■□□□□ 0.28
SLIRP-201ENST00000238688 CRBNQ96SW2 442 aa16.82■□□□□ 0.28
SLIRP-201ENST00000238688 KCPQ6ZWJ8 1503 aa16.81■□□□□ 0.28
SLIRP-201ENST00000238688 RPS6KA4O75676 772 aa16.81■□□□□ 0.28
SLIRP-201ENST00000238688 TAF7Q15545 349 aaPredicted RBP16.81■□□□□ 0.28
SLIRP-201ENST00000238688 ATF7IPQ6VMQ6 1270 aa16.81■□□□□ 0.28
SLIRP-201ENST00000238688 SSH1Q8WYL5 1049 aa16.81■□□□□ 0.28
SLIRP-201ENST00000238688 ARHGEF1Q92888 912 aaKnown RBP16.81■□□□□ 0.28
SLIRP-201ENST00000238688 RTCBQ9Y3I0 505 aaKnown RBP16.81■□□□□ 0.28
SLIRP-201ENST00000238688 LAS1LQ9Y4W2 734 aaKnown RBP16.81■□□□□ 0.28
SLIRP-201ENST00000238688 TRAPPC3LQ5T215 181 aa16.8■□□□□ 0.28
SLIRP-201ENST00000238688 MCM10Q7L590 875 aa16.8■□□□□ 0.28
SLIRP-201ENST00000238688 DZIP1LQ8IYY4 767 aaKnown RBP16.8■□□□□ 0.28
SLIRP-201ENST00000238688 ZNF784Q8NCA9 323 aaPredicted RBP16.8■□□□□ 0.28
SLIRP-201ENST00000238688 THUMPD2Q9BTF0 503 aaKnown RBP16.8■□□□□ 0.28
SLIRP-201ENST00000238688 CRKLP46109 303 aaKnown RBP16.79■□□□□ 0.28
SLIRP-201ENST00000238688 SLC39A6Q13433 755 aa16.79■□□□□ 0.28
SLIRP-201ENST00000238688 INTS5Q6P9B9 1019 aaKnown RBP16.79■□□□□ 0.28
SLIRP-201ENST00000238688 FTSJ3Q8IY81 847 aaKnown RBP16.79■□□□□ 0.28
SLIRP-201ENST00000238688 TSPYL4Q9UJ04 414 aa16.79■□□□□ 0.28
SLIRP-201ENST00000238688 GYS1P13807 737 aa16.78■□□□□ 0.28
SLIRP-201ENST00000238688 ADRA2BP18089 450 aa16.78■□□□□ 0.28
SLIRP-201ENST00000238688 B4GALNT3Q6L9W6 998 aa16.78■□□□□ 0.28
SLIRP-201ENST00000238688 DNAJC10Q8IXB1 793 aa16.78■□□□□ 0.28
SLIRP-201ENST00000238688 DDX19BQ9UMR2 479 aa16.78■□□□□ 0.28
SLIRP-201ENST00000238688 N4BP2Q86UW6 1770 aaPredicted RBP16.77■□□□□ 0.28
SLIRP-201ENST00000238688 PTPRCP08575 1304 aa16.77■□□□□ 0.28
SLIRP-201ENST00000238688 MMP10P09238 476 aa16.77■□□□□ 0.28
SLIRP-201ENST00000238688 DCTN1Q14203 1278 aa16.77■□□□□ 0.28
SLIRP-201ENST00000238688 MVPQ14764 893 aaKnown RBP16.77■□□□□ 0.28
SLIRP-201ENST00000238688 CENPQQ7L2Z9 268 aaPredicted RBP16.77■□□□□ 0.28
SLIRP-201ENST00000238688 IL17REQ8NFR9 667 aa16.77■□□□□ 0.28
SLIRP-201ENST00000238688 FRAT1Q92837 279 aaPredicted RBP16.77■□□□□ 0.28
SLIRP-201ENST00000238688 API5Q9BZZ5 524 aaKnown RBP16.77■□□□□ 0.28
SLIRP-201ENST00000238688 BRCA1P38398 1863 aaKnown RBP16.76■□□□□ 0.27
SLIRP-201ENST00000238688 C20orf194Q5TEA3 1177 aa16.76■□□□□ 0.27
SLIRP-201ENST00000238688 CLUAP1Q96AJ1 413 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms