RNA–Protein interactions for RNA: YLL039C

UBI4, Transcript of Ubiquitin, yeast

Gene UBI4, Length 1,146 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBI4	YLL039C	YNR040W	P53736	256 aa		5.41	□□□□□ -1.54
UBI4	YLL039C	RRG1	Q12167	365 aa	Predicted RBP	5.41	□□□□□ -1.54
UBI4	YLL039C	POM152	P39685	1337 aa		5.41	□□□□□ -1.54
UBI4	YLL039C	TOM1	Q03280	3268 aa		5.41	□□□□□ -1.54
UBI4	YLL039C	QCR6	P00127	147 aa		5.4	□□□□□ -1.54
UBI4	YLL039C	HAP4	P14064	554 aa		5.4	□□□□□ -1.54
UBI4	YLL039C	KAP122	P32767	1081 aa		5.4	□□□□□ -1.54
UBI4	YLL039C	AFG2	P32794	780 aa		5.4	□□□□□ -1.54
UBI4	YLL039C	SCD5	P34758	872 aa		5.4	□□□□□ -1.54
UBI4	YLL039C	NCL1	P38205	684 aa	Known RBP	5.4	□□□□□ -1.54
UBI4	YLL039C	GSM1	P42950	618 aa		5.4	□□□□□ -1.54
UBI4	YLL039C	PRP42	Q03776	544 aa	Known RBP	5.4	□□□□□ -1.54
UBI4	YLL039C	GIS4	Q04233	774 aa		5.4	□□□□□ -1.54
UBI4	YLL039C	TOS4	Q06266	489 aa		5.4	□□□□□ -1.54
UBI4	YLL039C	NCB2	Q92317	146 aa		5.4	□□□□□ -1.54
UBI4	YLL039C	YLR278C	Q05854	1341 aa		5.4	□□□□□ -1.55
UBI4	YLL039C	FIG2	P25653	1609 aa		5.39	□□□□□ -1.55
UBI4	YLL039C	THS1	P04801	734 aa	Known RBP	5.39	□□□□□ -1.55
UBI4	YLL039C	RPC31	P17890	251 aa		5.39	□□□□□ -1.55
UBI4	YLL039C	GLO3	P38682	493 aa	Known RBP	5.39	□□□□□ -1.55
UBI4	YLL039C	NMD2	P38798	1089 aa	Known RBP	5.39	□□□□□ -1.55
UBI4	YLL039C	FPR3	P38911	411 aa	Known RBP	5.39	□□□□□ -1.55
UBI4	YLL039C	YGL242C	P53066	181 aa		5.39	□□□□□ -1.55
UBI4	YLL039C	YNL193W	P53870	558 aa		5.39	□□□□□ -1.55
UBI4	YLL039C	CRF1	Q04930	467 aa		5.39	□□□□□ -1.55
UBI4	YLL039C	RPN7	Q06103	429 aa	Known RBP	5.39	□□□□□ -1.55
UBI4	YLL039C	WRS1	Q12109	432 aa	Known RBP	5.39	□□□□□ -1.55
UBI4	YLL039C	PSF3	Q12146	194 aa		5.39	□□□□□ -1.55
UBI4	YLL039C	PIF1	P07271	859 aa		5.38	□□□□□ -1.55
UBI4	YLL039C	SSA4	P22202	642 aa	Known RBP	5.38	□□□□□ -1.55
UBI4	YLL039C	SIS2	P36024	562 aa		5.38	□□□□□ -1.55
UBI4	YLL039C	KTR3	P38130	404 aa	Predicted RBP	5.38	□□□□□ -1.55
UBI4	YLL039C	FET4	P40988	552 aa		5.38	□□□□□ -1.55
UBI4	YLL039C	ROM1	P53046	1155 aa		5.38	□□□□□ -1.55
UBI4	YLL039C	YGR117C	P53270	476 aa		5.38	□□□□□ -1.55
UBI4	YLL039C	TRM44	Q02648	567 aa	Known RBP	5.38	□□□□□ -1.55
UBI4	YLL039C	TIM50	Q02776	476 aa		5.38	□□□□□ -1.55
UBI4	YLL039C	RRI2	Q12348	645 aa		5.38	□□□□□ -1.55
UBI4	YLL039C	RPT3	P33298	428 aa	Known RBP	5.37	□□□□□ -1.55
UBI4	YLL039C	APM2	P38700	605 aa		5.37	□□□□□ -1.55
UBI4	YLL039C	YFH7	P43591	353 aa		5.37	□□□□□ -1.55
UBI4	YLL039C	VPS4	P52917	437 aa		5.37	□□□□□ -1.55
UBI4	YLL039C	FLO11	P08640	1367 aa		5.37	□□□□□ -1.55
UBI4	YLL039C	NOT3	P06102	836 aa	Known RBP	5.36	□□□□□ -1.55
UBI4	YLL039C	CDC16	P09798	840 aa		5.36	□□□□□ -1.55
UBI4	YLL039C	GAL2	P13181	574 aa		5.36	□□□□□ -1.55
UBI4	YLL039C	RPS7A	P26786	190 aa	Known RBP	5.36	□□□□□ -1.55
UBI4	YLL039C	STV1	P37296	890 aa		5.36	□□□□□ -1.55
UBI4	YLL039C	ECM21	P38167	1117 aa	Known RBP	5.36	□□□□□ -1.55
UBI4	YLL039C	RFC1	P38630	861 aa	Known RBP	5.36	□□□□□ -1.55
UBI4	YLL039C	YIR042C	P40586	236 aa		5.36	□□□□□ -1.55
UBI4	YLL039C	MLC1	P53141	149 aa		5.36	□□□□□ -1.55
UBI4	YLL039C	ALO1	P54783	526 aa	Known RBP	5.36	□□□□□ -1.55
UBI4	YLL039C	INM2	Q05533	292 aa		5.36	□□□□□ -1.55
UBI4	YLL039C	ACK1	Q07622	623 aa	Predicted RBP	5.36	□□□□□ -1.55
UBI4	YLL039C	PDR18	P53756	1333 aa		5.35	□□□□□ -1.55
UBI4	YLL039C	MRP10	O75012	95 aa		5.35	□□□□□ -1.55
UBI4	YLL039C	AI3	P03877	415 aa		5.35	□□□□□ -1.55
UBI4	YLL039C	HPR1	P17629	752 aa	Known RBP	5.35	□□□□□ -1.55
UBI4	YLL039C	CLC1	P17891	233 aa		5.35	□□□□□ -1.55
UBI4	YLL039C	MAC1	P35192	417 aa		5.35	□□□□□ -1.55
UBI4	YLL039C	PTK1	P36002	662 aa	Predicted RBP	5.35	□□□□□ -1.55
UBI4	YLL039C	CYB2	P00175	591 aa		5.34	□□□□□ -1.55
UBI4	YLL039C	SNF3	P10870	884 aa		5.34	□□□□□ -1.55
UBI4	YLL039C	NAB2	P32505	525 aa	Known RBP RIP-Chip data	5.34	□□□□□ -1.55	not detected
UBI4	YLL039C	PGM1	P33401	570 aa	Known RBP	5.34	□□□□□ -1.55
UBI4	YLL039C	QDR2	P40474	542 aa		5.34	□□□□□ -1.55
UBI4	YLL039C	MTC3	P53077	123 aa		5.34	□□□□□ -1.55
UBI4	YLL039C	SEN54	Q02825	467 aa	Predicted RBP	5.34	□□□□□ -1.55
UBI4	YLL039C	ECM16	Q04217	1267 aa	Known RBP	5.34	□□□□□ -1.55
UBI4	YLL039C	NKP2	Q06162	153 aa		5.34	□□□□□ -1.55
UBI4	YLL039C	GSC2	P40989	1895 aa		5.33	□□□□□ -1.56
UBI4	YLL039C	CBP1	P07252	654 aa		5.33	□□□□□ -1.56
UBI4	YLL039C	IDI1	P15496	288 aa		5.33	□□□□□ -1.56
UBI4	YLL039C	GRX7	P38068	203 aa		5.33	□□□□□ -1.56
UBI4	YLL039C	RRM3	P38766	723 aa		5.33	□□□□□ -1.56
UBI4	YLL039C	PEA2	P40091	420 aa		5.33	□□□□□ -1.56
UBI4	YLL039C	PIB2	P53191	635 aa		5.33	□□□□□ -1.56
UBI4	YLL039C	BRE1	Q07457	700 aa	Known RBP	5.33	□□□□□ -1.56
UBI4	YLL039C	SAC7	P17121	654 aa		5.32	□□□□□ -1.56
UBI4	YLL039C	SUV3	P32580	737 aa		5.32	□□□□□ -1.56
UBI4	YLL039C	MDL2	P33311	773 aa		5.32	□□□□□ -1.56
UBI4	YLL039C	BOI1	P38041	980 aa	Known RBP	5.32	□□□□□ -1.56
UBI4	YLL039C	YIL089W	P40500	205 aa		5.32	□□□□□ -1.56
UBI4	YLL039C	INP52	P50942	1183 aa		5.32	□□□□□ -1.56
UBI4	YLL039C	MRPS35	P53292	345 aa		5.32	□□□□□ -1.56
UBI4	YLL039C	RMD1	Q03441	430 aa		5.32	□□□□□ -1.56
UBI4	YLL039C	VAN1	P23642	535 aa		5.31	□□□□□ -1.56
UBI4	YLL039C	GEF1	P37020	779 aa		5.31	□□□□□ -1.56
UBI4	YLL039C	PBY1	P38254	753 aa		5.31	□□□□□ -1.56
UBI4	YLL039C	OSH3	P38713	996 aa	Known RBP	5.31	□□□□□ -1.56
UBI4	YLL039C	NIT1	P40447	199 aa		5.31	□□□□□ -1.56
UBI4	YLL039C	ARI1	P53111	347 aa	Known RBP	5.31	□□□□□ -1.56
UBI4	YLL039C	EAF7	P53911	425 aa	Known RBP	5.31	□□□□□ -1.56
UBI4	YLL039C	CWC15	Q03772	175 aa	Known RBP	5.31	□□□□□ -1.56
UBI4	YLL039C	RAD50	P12753	1312 aa		5.3	□□□□□ -1.56
UBI4	YLL039C	IME2	P32581	645 aa		5.3	□□□□□ -1.56
UBI4	YLL039C	OMA1	P36163	345 aa		5.3	□□□□□ -1.56
UBI4	YLL039C	YMR147W	P40218	223 aa	Known RBP	5.3	□□□□□ -1.56
UBI4	YLL039C	IOC3	P43596	787 aa		5.3	□□□□□ -1.56

Retrieved 100 of 5,963 RNA–protein pairs in 10.2 ms