RNA–Protein interactions for RNA: YHR120W

MSH1, Transcript of DNA-binding protein of the mitochondria, yeast

Gene MSH1, Length 2,880 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSH1	YHR120W	POX1	P13711	748 aa		5.71	□□□□□ -1.5
MSH1	YHR120W	STI1	P15705	589 aa	Known RBP RIP-Chip data	5.71	□□□□□ -1.5	not detected
MSH1	YHR120W	SEC8	P32855	1065 aa		5.71	□□□□□ -1.5
MSH1	YHR120W	RXT2	P38255	430 aa		5.71	□□□□□ -1.5
MSH1	YHR120W	NOC2	P39744	710 aa	Known RBP	5.71	□□□□□ -1.5
MSH1	YHR120W	YKE2	P52553	114 aa		5.71	□□□□□ -1.5
MSH1	YHR120W	ARP5	P53946	755 aa		5.71	□□□□□ -1.5
MSH1	YHR120W	TRM11	Q12463	433 aa		5.71	□□□□□ -1.5
MSH1	YHR120W	TY1B-A	O13527	1196 aa	Known RBP	5.7	□□□□□ -1.5
MSH1	YHR120W	PDC1	P06169	563 aa	Known RBP	5.7	□□□□□ -1.5
MSH1	YHR120W	SWI4	P25302	1093 aa	Known RBP	5.7	□□□□□ -1.5
MSH1	YHR120W	PWP2	P25635	923 aa	Known RBP	5.7	□□□□□ -1.5
MSH1	YHR120W	MCM2	P29469	868 aa		5.7	□□□□□ -1.5
MSH1	YHR120W	BMH2	P34730	273 aa	Known RBP	5.7	□□□□□ -1.5
MSH1	YHR120W	CCT3	P39077	534 aa	Known RBP	5.7	□□□□□ -1.5
MSH1	YHR120W	PCI8	P40512	444 aa		5.7	□□□□□ -1.5
MSH1	YHR120W	SKP2	P42843	763 aa		5.7	□□□□□ -1.5
MSH1	YHR120W	TTI1	P36097	1038 aa		5.7	□□□□□ -1.5
MSH1	YHR120W	YPL150W	Q12152	901 aa		5.7	□□□□□ -1.5
MSH1	YHR120W	HO	P09932	586 aa		5.69	□□□□□ -1.5
MSH1	YHR120W	HCA4	P20448	770 aa	Known RBP	5.69	□□□□□ -1.5
MSH1	YHR120W	MAK11	P20484	414 aa	Known RBP	5.69	□□□□□ -1.5
MSH1	YHR120W	TIM23	P32897	222 aa		5.69	□□□□□ -1.5
MSH1	YHR120W	MIC60	P36112	540 aa		5.69	□□□□□ -1.5
MSH1	YHR120W	SUL1	P38359	859 aa		5.69	□□□□□ -1.5
MSH1	YHR120W	CCT5	P40413	562 aa	Known RBP	5.69	□□□□□ -1.5
MSH1	YHR120W	STU2	P46675	888 aa		5.69	□□□□□ -1.5
MSH1	YHR120W	YPL034W	Q03083	165 aa		5.69	□□□□□ -1.5
MSH1	YHR120W	PSK2	Q08217	1101 aa		5.69	□□□□□ -1.5
MSH1	YHR120W	OXR1	Q08952	273 aa		5.69	□□□□□ -1.5
MSH1	YHR120W	KTR2	P33550	425 aa		5.69	□□□□□ -1.5
MSH1	YHR120W	FIR1	P40020	876 aa		5.69	□□□□□ -1.5
MSH1	YHR120W	YGL138C	P53122	345 aa		5.69	□□□□□ -1.5
MSH1	YHR120W	GDE1	Q02979	1223 aa		5.69	□□□□□ -1.5
MSH1	YHR120W	YLR407W	Q06070	228 aa		5.69	□□□□□ -1.5
MSH1	YHR120W	WHI4	Q07655	649 aa	Known RBP	5.69	□□□□□ -1.5
MSH1	YHR120W	APC11	Q12157	165 aa		5.69	□□□□□ -1.5
MSH1	YHR120W	PRX1	P34227	261 aa	Known RBP	5.69	□□□□□ -1.5
MSH1	YHR120W	FLR1	P38124	548 aa		5.69	□□□□□ -1.5
MSH1	YHR120W	RPN10	P38886	268 aa	Known RBP	5.69	□□□□□ -1.5
MSH1	YHR120W	GIS4	Q04233	774 aa		5.69	□□□□□ -1.5
MSH1	YHR120W	MBR1	P23493	339 aa		5.68	□□□□□ -1.5
MSH1	YHR120W	CLA4	P48562	842 aa		5.68	□□□□□ -1.5
MSH1	YHR120W	PEX14	P53112	341 aa		5.68	□□□□□ -1.5
MSH1	YHR120W	DAK1	P54838	584 aa	Known RBP	5.68	□□□□□ -1.5
MSH1	YHR120W	ESC2	Q06340	456 aa		5.68	□□□□□ -1.5
MSH1	YHR120W	ARP6	Q12509	438 aa		5.68	□□□□□ -1.5
MSH1	YHR120W	DDP1	Q99321	188 aa	Known RBP	5.68	□□□□□ -1.5
MSH1	YHR120W	QCR6	P00127	147 aa		5.68	□□□□□ -1.5
MSH1	YHR120W	MRPL10	P36520	322 aa		5.68	□□□□□ -1.5
MSH1	YHR120W	NPR3	P38742	1146 aa		5.68	□□□□□ -1.5
MSH1	YHR120W	FMP30	Q02883	468 aa		5.68	□□□□□ -1.5
MSH1	YHR120W	SMD2	Q06217	110 aa	Known RBP	5.68	□□□□□ -1.5
MSH1	YHR120W	SES1	P07284	462 aa	Known RBP	5.67	□□□□□ -1.5
MSH1	YHR120W	GPT2	P36148	743 aa		5.67	□□□□□ -1.5
MSH1	YHR120W	YHL017W	P38745	532 aa		5.67	□□□□□ -1.5
MSH1	YHR120W	RPS7B	P48164	190 aa	Known RBP	5.67	□□□□□ -1.5
MSH1	YHR120W	UBP15	P50101	1230 aa		5.67	□□□□□ -1.5
MSH1	YHR120W	CBP3	P21560	335 aa		5.67	□□□□□ -1.5
MSH1	YHR120W	VPS1	P21576	704 aa	Known RBP	5.67	□□□□□ -1.5
MSH1	YHR120W	SLX5	P32828	619 aa	Known RBP	5.67	□□□□□ -1.5
MSH1	YHR120W	YFL040W	P43562	540 aa		5.67	□□□□□ -1.5
MSH1	YHR120W	CTF18	P49956	741 aa		5.67	□□□□□ -1.5
MSH1	YHR120W	YGR273C	P53329	174 aa		5.67	□□□□□ -1.5
MSH1	YHR120W	BNI5	P53890	448 aa	Known RBP	5.67	□□□□□ -1.5
MSH1	YHR120W	ORC4	P54791	529 aa		5.67	□□□□□ -1.5
MSH1	YHR120W	OYE2	Q03558	400 aa	Known RBP	5.67	□□□□□ -1.5
MSH1	YHR120W	ELG1	Q12050	791 aa		5.67	□□□□□ -1.5
MSH1	YHR120W	CDC6	P09119	513 aa		5.66	□□□□□ -1.5
MSH1	YHR120W	MAS2	P11914	482 aa		5.66	□□□□□ -1.5
MSH1	YHR120W	FRS2	P15625	503 aa	Known RBP	5.66	□□□□□ -1.5
MSH1	YHR120W	SAS3	P34218	831 aa		5.66	□□□□□ -1.5
MSH1	YHR120W	WHI3	P34761	661 aa	Known RBP	5.66	□□□□□ -1.5
MSH1	YHR120W	UBP11	P36026	717 aa		5.66	□□□□□ -1.5
MSH1	YHR120W	SCY1	P53009	804 aa		5.66	□□□□□ -1.5
MSH1	YHR120W	NAF1	P53919	492 aa	Known RBP	5.66	□□□□□ -1.5
MSH1	YHR120W	RTP1	Q12751	981 aa		5.66	□□□□□ -1.5
MSH1	YHR120W	TAO3	P40468	2376 aa		5.66	□□□□□ -1.5
MSH1	YHR120W	SRO9	P25567	434 aa	Known RBP	5.66	□□□□□ -1.5
MSH1	YHR120W	CLB5	P30283	435 aa		5.66	□□□□□ -1.5
MSH1	YHR120W	ISW1	P38144	1129 aa		5.66	□□□□□ -1.5
MSH1	YHR120W	RFT1	P38206	574 aa	Predicted RBP	5.66	□□□□□ -1.5
MSH1	YHR120W	CIT3	P43635	486 aa		5.66	□□□□□ -1.5
MSH1	YHR120W	ENT3	P47160	408 aa		5.66	□□□□□ -1.5
MSH1	YHR120W	AIM33	Q04516	312 aa		5.66	□□□□□ -1.5
MSH1	YHR120W	FKS1	P38631	1876 aa	Known RBP	5.66	□□□□□ -1.5
MSH1	YHR120W	CYC8	P14922	966 aa		5.65	□□□□□ -1.5
MSH1	YHR120W	MIP1	P15801	1254 aa		5.65	□□□□□ -1.5
MSH1	YHR120W	DID4	P36108	232 aa		5.65	□□□□□ -1.5
MSH1	YHR120W	BUD6	P41697	788 aa		5.65	□□□□□ -1.5
MSH1	YHR120W	RET3	P53600	189 aa		5.65	□□□□□ -1.5
MSH1	YHR120W	CEX1	Q12453	761 aa		5.65	□□□□□ -1.5
MSH1	YHR120W	CPA2	P03965	1118 aa	Known RBP	5.65	□□□□□ -1.5
MSH1	YHR120W	ATE1	P16639	503 aa		5.65	□□□□□ -1.5
MSH1	YHR120W	GAA1	P39012	614 aa		5.65	□□□□□ -1.5
MSH1	YHR120W	DSE4	P53753	1117 aa		5.65	□□□□□ -1.5
MSH1	YHR120W	VPS72	Q03388	795 aa		5.65	□□□□□ -1.5
MSH1	YHR120W	YLL058W	Q12198	575 aa		5.65	□□□□□ -1.5
MSH1	YHR120W	YDR524C-B	Q3E6R4	66 aa		5.65	□□□□□ -1.5
MSH1	YHR120W	SNA3	P14359	133 aa		5.65	□□□□□ -1.51

Retrieved 100 of 5,963 RNA–protein pairs in 68.8 ms