RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-253	ENST00000636977	PIK3C2A	O00443	1686 aa		18.32	■□□□□ 0.52
CLN3-253	ENST00000636977	HMMR	O75330	724 aa		18.32	■□□□□ 0.52
CLN3-253	ENST00000636977	GNAI2	P04899	355 aa		18.32	■□□□□ 0.52
CLN3-253	ENST00000636977	HOXC9	P31274	260 aa		18.32	■□□□□ 0.52
CLN3-253	ENST00000636977	DIP2A	Q14689	1571 aa		18.31	■□□□□ 0.52
CLN3-253	ENST00000636977	RBM33	Q96EV2	1170 aa	Known RBP	18.31	■□□□□ 0.52
CLN3-253	ENST00000636977	GNAT3	A8MTJ3	354 aa		18.3	■□□□□ 0.52
CLN3-253	ENST00000636977	TBX22	Q9Y458	520 aa		18.3	■□□□□ 0.52
CLN3-253	ENST00000636977	KCNA6	P17658	529 aa		18.3	■□□□□ 0.52
CLN3-253	ENST00000636977	CASC1	Q6TDU7	716 aa		18.3	■□□□□ 0.52
CLN3-253	ENST00000636977	MCTP1	Q6DN14	999 aa		18.3	■□□□□ 0.52
CLN3-253	ENST00000636977	ERC2	O15083	957 aa		18.29	■□□□□ 0.52
CLN3-253	ENST00000636977	C14orf37	Q86TY3	774 aa		18.29	■□□□□ 0.52
CLN3-253	ENST00000636977	LRRFIP2	Q9Y608	721 aa	Known RBP	18.29	■□□□□ 0.52
CLN3-253	ENST00000636977	ABTB2	Q8N961	1025 aa		18.28	■□□□□ 0.52
CLN3-253	ENST00000636977	PHAX	Q9H814	394 aa	Known RBP	18.28	■□□□□ 0.52
CLN3-253	ENST00000636977	CCDC30	Q5VVM6	783 aa		18.28	■□□□□ 0.52
CLN3-253	ENST00000636977	OSBPL3	Q9H4L5	887 aa		18.28	■□□□□ 0.52
CLN3-253	ENST00000636977	SALL3	Q9BXA9	1300 aa		18.28	■□□□□ 0.52
CLN3-253	ENST00000636977	DDX49	Q9Y6V7	483 aa	Known RBP	18.27	■□□□□ 0.52
CLN3-253	ENST00000636977	REC8	O95072	547 aa		18.27	■□□□□ 0.52
CLN3-253	ENST00000636977	SKOR2	Q2VWA4	1001 aa	Predicted RBP	18.27	■□□□□ 0.52
CLN3-253	ENST00000636977	UNC5CL	Q8IV45	518 aa		18.27	■□□□□ 0.52
CLN3-253	ENST00000636977	CYP2E1	P05181	493 aa	Predicted RBP	18.27	■□□□□ 0.51
CLN3-253	ENST00000636977	FOXD4L5	Q5VV16	416 aa	Predicted RBP	18.27	■□□□□ 0.51
CLN3-253	ENST00000636977	CLEC17A	Q6ZS10	378 aa		18.27	■□□□□ 0.51
CLN3-253	ENST00000636977	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	18.27	■□□□□ 0.51
CLN3-253	ENST00000636977	LRRCC1	Q9C099	1032 aa		18.27	■□□□□ 0.51
CLN3-253	ENST00000636977	PALD1	Q9ULE6	856 aa		18.27	■□□□□ 0.51
CLN3-253	ENST00000636977	ZDHHC9	Q9Y397	364 aa		18.27	■□□□□ 0.51
CLN3-253	ENST00000636977	NWD1	Q149M9	1564 aa		18.26	■□□□□ 0.51
CLN3-253	ENST00000636977	ATP8B2	P98198	1209 aa		18.26	■□□□□ 0.51
CLN3-253	ENST00000636977	RILPL2	Q969X0	211 aa		18.26	■□□□□ 0.51
CLN3-253	ENST00000636977	USP44	Q9H0E7	712 aa		18.26	■□□□□ 0.51
CLN3-253	ENST00000636977	IL1RAPL2	Q9NP60	686 aa		18.26	■□□□□ 0.51
CLN3-253	ENST00000636977	ERBB4	Q15303	1308 aa		18.26	■□□□□ 0.51
CLN3-253	ENST00000636977	MX1	P20591	662 aa		18.25	■□□□□ 0.51
CLN3-253	ENST00000636977	ST18	O60284	1047 aa		18.25	■□□□□ 0.51
CLN3-253	ENST00000636977	NOL8	Q76FK4	1167 aa	Known RBP	18.24	■□□□□ 0.51
CLN3-253	ENST00000636977	IL25	Q9H293	177 aa		18.24	■□□□□ 0.51
CLN3-253	ENST00000636977	ARHGAP23	Q9P227	1491 aa		18.24	■□□□□ 0.51
CLN3-253	ENST00000636977	MAP3K5	Q99683	1374 aa		18.24	■□□□□ 0.51
CLN3-253	ENST00000636977	TRIM6-TRIM34	B2RNG4	842 aa		18.24	■□□□□ 0.51
CLN3-253	ENST00000636977	NCL	P19338	710 aa	Known RBP	18.24	■□□□□ 0.51
CLN3-253	ENST00000636977	NEK4	P51957	841 aa		18.24	■□□□□ 0.51
CLN3-253	ENST00000636977	TAF7	Q15545	349 aa	Predicted RBP	18.24	■□□□□ 0.51
CLN3-253	ENST00000636977	ESYT1	Q9BSJ8	1104 aa		18.24	■□□□□ 0.51
CLN3-253	ENST00000636977	XRN1	Q8IZH2	1706 aa	Known RBP	18.23	■□□□□ 0.51
CLN3-253	ENST00000636977	FAM208A	Q9UK61	1670 aa	Known RBP	18.23	■□□□□ 0.51
CLN3-253	ENST00000636977	ZBTB7C	A1YPR0	619 aa		18.23	■□□□□ 0.51
CLN3-253	ENST00000636977	GOLGA6L22	H0YM25	854 aa		18.23	■□□□□ 0.51
CLN3-253	ENST00000636977	GNAI3	P08754	354 aa		18.23	■□□□□ 0.51
CLN3-253	ENST00000636977	EIF2S2	P20042	333 aa	Known RBP	18.23	■□□□□ 0.51
CLN3-253	ENST00000636977	LMBRD1	Q9NUN5	540 aa		18.23	■□□□□ 0.51
CLN3-253	ENST00000636977	SLIT1	O75093	1534 aa		18.23	■□□□□ 0.51
CLN3-253	ENST00000636977	HTATSF1	O43719	755 aa	Known RBP	18.23	■□□□□ 0.51
CLN3-253	ENST00000636977	KLHL40	Q2TBA0	621 aa		18.23	■□□□□ 0.51
CLN3-253	ENST00000636977	LGR6	Q9HBX8	967 aa		18.23	■□□□□ 0.51
CLN3-253	ENST00000636977	MARF1	Q9Y4F3	1742 aa	Known RBP	18.23	■□□□□ 0.51
CLN3-253	ENST00000636977	IBTK	Q9P2D0	1353 aa	Predicted RBP	18.22	■□□□□ 0.51
CLN3-253	ENST00000636977	MAP4K4	O95819	1239 aa	Predicted RBP	18.22	■□□□□ 0.51
CLN3-253	ENST00000636977	NUTM1	Q86Y26	1132 aa		18.22	■□□□□ 0.51
CLN3-253	ENST00000636977	LRRC37A3	O60309	1634 aa		18.22	■□□□□ 0.51
CLN3-253	ENST00000636977	SETD1B	Q9UPS6	1966 aa	Known RBP	18.22	■□□□□ 0.51
CLN3-253	ENST00000636977	KCNQ3	O43525	872 aa		18.22	■□□□□ 0.51
CLN3-253	ENST00000636977	NUCB2	P80303	420 aa		18.22	■□□□□ 0.51
CLN3-253	ENST00000636977	HDGFL1	Q5TGJ6	251 aa		18.22	■□□□□ 0.51
CLN3-253	ENST00000636977	ANXA1	P04083	346 aa		18.21	■□□□□ 0.51
CLN3-253	ENST00000636977	CHML	P26374	656 aa		18.21	■□□□□ 0.51
CLN3-253	ENST00000636977	RBM10	P98175	930 aa	Known RBP	18.21	■□□□□ 0.51
CLN3-253	ENST00000636977	CAVIN1	Q6NZI2	390 aa	Known RBP	18.21	■□□□□ 0.51
CLN3-253	ENST00000636977	THEMIS	Q8N1K5	641 aa	Predicted RBP	18.21	■□□□□ 0.51
CLN3-253	ENST00000636977	ANO2	Q9NQ90	1003 aa		18.21	■□□□□ 0.51
CLN3-253	ENST00000636977	TMX3	Q96JJ7	454 aa		18.21	■□□□□ 0.5
CLN3-253	ENST00000636977	PRPF40A	O75400	957 aa	Known RBP	18.2	■□□□□ 0.5
CLN3-253	ENST00000636977	RBM27	Q9P2N5	1060 aa	Known RBP	18.2	■□□□□ 0.5
CLN3-253	ENST00000636977	UBTFL1	P0CB47	393 aa	Predicted RBP	18.2	■□□□□ 0.5
CLN3-253	ENST00000636977	NBPF6	Q5VWK0	638 aa		18.2	■□□□□ 0.5
CLN3-253	ENST00000636977	NBPF4	Q96M43	638 aa		18.2	■□□□□ 0.5
CLN3-253	ENST00000636977	ISY1	Q9ULR0	285 aa	Known RBP	18.2	■□□□□ 0.5
CLN3-253	ENST00000636977	PTMS	P20962	102 aa		18.19	■□□□□ 0.5
CLN3-253	ENST00000636977	RRP9	O43818	475 aa	Known RBP	18.19	■□□□□ 0.5
CLN3-253	ENST00000636977	UPF3B	Q9BZI7	483 aa	Known RBP	18.18	■□□□□ 0.5
CLN3-253	ENST00000636977	NBPF7	P0C2Y1	421 aa	Predicted RBP	18.18	■□□□□ 0.5
CLN3-253	ENST00000636977	PPP1R42	Q7Z4L9	355 aa		18.18	■□□□□ 0.5
CLN3-253	ENST00000636977	GPT2	Q8TD30	523 aa		18.18	■□□□□ 0.5
CLN3-253	ENST00000636977	CWC22	Q9HCG8	908 aa	Known RBP	18.18	■□□□□ 0.5
CLN3-253	ENST00000636977	NSFL1C	Q9UNZ2	370 aa	Known RBP	18.18	■□□□□ 0.5
CLN3-253	ENST00000636977	TUBGCP6	Q96RT7	1819 aa		18.18	■□□□□ 0.5
CLN3-253	ENST00000636977	CLCN1	P35523	988 aa		18.17	■□□□□ 0.5
CLN3-253	ENST00000636977	LRRC59	Q96AG4	307 aa	Known RBP	18.17	■□□□□ 0.5
CLN3-253	ENST00000636977	CHPF2	Q9P2E5	772 aa		18.17	■□□□□ 0.5
CLN3-253	ENST00000636977	SURF6	O75683	361 aa	Known RBP	18.17	■□□□□ 0.5
CLN3-253	ENST00000636977	ZSCAN23	Q3MJ62	389 aa		18.17	■□□□□ 0.5
CLN3-253	ENST00000636977	ESPN	B1AK53	854 aa		18.16	■□□□□ 0.5
CLN3-253	ENST00000636977	STAP2	Q9UGK3	403 aa		18.16	■□□□□ 0.5
CLN3-253	ENST00000636977	NASP	P49321	788 aa	Predicted RBP	18.16	■□□□□ 0.5
CLN3-253	ENST00000636977	SSH3	Q8TE77	659 aa		18.15	■□□□□ 0.5
CLN3-253	ENST00000636977	EIF4A1	P60842	406 aa	Known RBP	18.15	■□□□□ 0.5
CLN3-253	ENST00000636977	PHF8	Q9UPP1	1060 aa		18.15	■□□□□ 0.5

Retrieved 100 of 20,778 RNA–protein pairs in 152.3 ms