RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 ZSCAN22P10073 491 aaPredicted RBP13.14□□□□□ -0.31
CLN3-244ENST00000636147 GJB2P29033 226 aa13.14□□□□□ -0.31
CLN3-244ENST00000636147 BBXQ8WY36 941 aaPredicted RBP13.14□□□□□ -0.31
CLN3-244ENST00000636147 IDI1Q13907 227 aa13.13□□□□□ -0.31
CLN3-244ENST00000636147 SRCIN1Q9C0H9 1055 aa13.13□□□□□ -0.31
CLN3-244ENST00000636147 PALD1Q9ULE6 856 aa13.13□□□□□ -0.31
CLN3-244ENST00000636147 PRDM15P57071 1507 aaPredicted RBP13.13□□□□□ -0.31
CLN3-244ENST00000636147 CCDC30Q5VVM6 783 aa13.13□□□□□ -0.31
CLN3-244ENST00000636147 DDX11Q96FC9 970 aa13.13□□□□□ -0.31
CLN3-244ENST00000636147 BCL2L12Q9HB09 334 aa13.13□□□□□ -0.31
CLN3-244ENST00000636147 A0A1W2PP64 1363 aa13.13□□□□□ -0.31
CLN3-244ENST00000636147 KDM4AO75164 1064 aa13.13□□□□□ -0.31
CLN3-244ENST00000636147 CCDC66A2RUB6 948 aa13.12□□□□□ -0.31
CLN3-244ENST00000636147 PPFIA3O75145 1194 aa13.12□□□□□ -0.31
CLN3-244ENST00000636147 TPM4P67936 248 aa13.12□□□□□ -0.31
CLN3-244ENST00000636147 RAPGEF3O95398 923 aa13.12□□□□□ -0.31
CLN3-244ENST00000636147 RNF20Q5VTR2 975 aa13.12□□□□□ -0.31
CLN3-244ENST00000636147 FAM173BQ6P4H8 233 aa13.12□□□□□ -0.31
CLN3-244ENST00000636147 FAM177A1Q8N128 213 aaPredicted RBP13.12□□□□□ -0.31
CLN3-244ENST00000636147 EIF4G3O43432 1585 aaKnown RBP13.12□□□□□ -0.31
CLN3-244ENST00000636147 NSD2O96028 1365 aa13.12□□□□□ -0.31
CLN3-244ENST00000636147 SMC2O95347 1197 aa13.12□□□□□ -0.31
CLN3-244ENST00000636147 PDCP20941 246 aa13.12□□□□□ -0.31
CLN3-244ENST00000636147 HDGFL1Q5TGJ6 251 aa13.12□□□□□ -0.31
CLN3-244ENST00000636147 MNS1Q8NEH6 495 aa13.12□□□□□ -0.31
CLN3-244ENST00000636147 FSD1Q9BTV5 496 aa13.12□□□□□ -0.31
CLN3-244ENST00000636147 CLIP2Q9UDT6 1046 aa13.12□□□□□ -0.31
CLN3-244ENST00000636147 DUOX2Q9NRD8 1548 aa13.11□□□□□ -0.31
CLN3-244ENST00000636147 ERVK-7P63135 1459 aa13.11□□□□□ -0.31
CLN3-244ENST00000636147 BRD1O95696 1058 aa13.11□□□□□ -0.31
CLN3-244ENST00000636147 LUZP1Q86V48 1076 aa13.11□□□□□ -0.31
CLN3-244ENST00000636147 PLEKHF1Q96S99 279 aa13.11□□□□□ -0.31
CLN3-244ENST00000636147 SYT1P21579 422 aa13.11□□□□□ -0.31
CLN3-244ENST00000636147 KINO60870 393 aaKnown RBP13.1□□□□□ -0.31
CLN3-244ENST00000636147 ZNF165P49910 485 aa13.1□□□□□ -0.31
CLN3-244ENST00000636147 AIMP1Q12904 312 aaKnown RBP13.1□□□□□ -0.31
CLN3-244ENST00000636147 PTPN14Q15678 1187 aa13.1□□□□□ -0.31
CLN3-244ENST00000636147 PHF23Q9BUL5 403 aaPredicted RBP13.1□□□□□ -0.31
CLN3-244ENST00000636147 SIL1Q9H173 461 aa13.1□□□□□ -0.31
CLN3-244ENST00000636147 RAB11FIP3O75154 756 aa13.1□□□□□ -0.31
CLN3-244ENST00000636147 CHMLP26374 656 aa13.1□□□□□ -0.31
CLN3-244ENST00000636147 G3BP1Q13283 466 aaKnown RBP eCLIP13.1□□□□□ -0.31
CLN3-244ENST00000636147 G2E3Q7L622 706 aa13.1□□□□□ -0.31
CLN3-244ENST00000636147 RPGRIP1LQ68CZ1 1315 aa13.1□□□□□ -0.31
CLN3-244ENST00000636147 AK2P54819 239 aa13.09□□□□□ -0.31
CLN3-244ENST00000636147 TEFQ10587 303 aa13.09□□□□□ -0.31
CLN3-244ENST00000636147 TRPM1Q7Z4N2 1603 aa13.09□□□□□ -0.31
CLN3-244ENST00000636147 BLOC1S2Q6QNY1 142 aa13.09□□□□□ -0.31
CLN3-244ENST00000636147 CREBRFQ8IUR6 639 aa13.09□□□□□ -0.31
CLN3-244ENST00000636147 F13A1P00488 732 aa13.09□□□□□ -0.31
CLN3-244ENST00000636147 ANO6Q4KMQ2 910 aa13.09□□□□□ -0.31
CLN3-244ENST00000636147 DACT1Q9NYF0 836 aa13.09□□□□□ -0.31
CLN3-244ENST00000636147 ABCC10Q5T3U5 1492 aa13.08□□□□□ -0.31
CLN3-244ENST00000636147 GTPBP4Q9BZE4 634 aaKnown RBP13.08□□□□□ -0.32
CLN3-244ENST00000636147 ZDHHC9Q9Y397 364 aa13.08□□□□□ -0.32
CLN3-244ENST00000636147 PSMA5P28066 241 aa13.08□□□□□ -0.32
CLN3-244ENST00000636147 TEX35Q5T0J7 233 aa13.08□□□□□ -0.32
CLN3-244ENST00000636147 PDLIM2Q96JY6 352 aa13.08□□□□□ -0.32
CLN3-244ENST00000636147 NLRP1Q9C000 1473 aa13.08□□□□□ -0.32
CLN3-244ENST00000636147 IBTKQ9P2D0 1353 aaPredicted RBP13.08□□□□□ -0.32
CLN3-244ENST00000636147 ME1P48163 572 aa13.08□□□□□ -0.32
CLN3-244ENST00000636147 FLIIQ13045 1269 aa13.08□□□□□ -0.32
CLN3-244ENST00000636147 HSP90AB4PQ58FF6 505 aa13.08□□□□□ -0.32
CLN3-244ENST00000636147 ZBTB9Q96C00 473 aa13.08□□□□□ -0.32
CLN3-244ENST00000636147 INTS4Q96HW7 963 aaKnown RBP13.07□□□□□ -0.32
CLN3-244ENST00000636147 RTEL1-TNFRSF6BF6WH68 1400 aa13.07□□□□□ -0.32
CLN3-244ENST00000636147 FAM200AQ8TCP9 573 aa13.07□□□□□ -0.32
CLN3-244ENST00000636147 MSH6P52701 1360 aa13.07□□□□□ -0.32
CLN3-244ENST00000636147 DDIT3P35638 169 aa13.07□□□□□ -0.32
CLN3-244ENST00000636147 DNAJC25Q9H1X3 360 aa13.07□□□□□ -0.32
CLN3-244ENST00000636147 PYCARDQ9ULZ3 195 aa13.07□□□□□ -0.32
CLN3-244ENST00000636147 POLR3GO15318 223 aaPredicted RBP13.06□□□□□ -0.32
CLN3-244ENST00000636147 AACSQ86V21 672 aa13.06□□□□□ -0.32
CLN3-244ENST00000636147 LRMPQ12912 555 aa13.06□□□□□ -0.32
CLN3-244ENST00000636147 PPP1R42Q7Z4L9 355 aa13.06□□□□□ -0.32
CLN3-244ENST00000636147 NUDT16Q96DE0 195 aaKnown RBP13.06□□□□□ -0.32
CLN3-244ENST00000636147 ZSCAN31Q96LW9 406 aaPredicted RBP13.06□□□□□ -0.32
CLN3-244ENST00000636147 PTPRCP08575 1304 aa13.06□□□□□ -0.32
CLN3-244ENST00000636147 FOXO3O43524 673 aa13.06□□□□□ -0.32
CLN3-244ENST00000636147 ANAPC15P60006 121 aa13.06□□□□□ -0.32
CLN3-244ENST00000636147 TYRO3Q06418 890 aa13.06□□□□□ -0.32
CLN3-244ENST00000636147 CEP135Q66GS9 1140 aa13.06□□□□□ -0.32
CLN3-244ENST00000636147 ARGLU1Q9NWB6 273 aaPredicted RBP13.06□□□□□ -0.32
CLN3-244ENST00000636147 NCKAP5LQ9HCH0 1330 aa13.05□□□□□ -0.32
CLN3-244ENST00000636147 PPP6R1Q9UPN7 881 aa13.05□□□□□ -0.32
CLN3-244ENST00000636147 ANXA1P04083 346 aa13.05□□□□□ -0.32
CLN3-244ENST00000636147 GUCY1B3Q02153 619 aa13.05□□□□□ -0.32
CLN3-244ENST00000636147 SKIDA1Q1XH10 827 aa13.05□□□□□ -0.32
CLN3-244ENST00000636147 HSP90AB2PQ58FF8 381 aa13.05□□□□□ -0.32
CLN3-244ENST00000636147 ZNF518AQ6AHZ1 1483 aa13.05□□□□□ -0.32
CLN3-244ENST00000636147 SYNMO15061 1565 aa13.05□□□□□ -0.32
CLN3-244ENST00000636147 PDE4CQ08493 712 aa13.05□□□□□ -0.32
CLN3-244ENST00000636147 PDILTQ8N807 584 aa13.05□□□□□ -0.32
CLN3-244ENST00000636147 KIF1BPQ96EK5 621 aa13.05□□□□□ -0.32
CLN3-244ENST00000636147 ABCC4O15439 1325 aa13.05□□□□□ -0.32
CLN3-244ENST00000636147 HDGFP51858 240 aaKnown RBP13.04□□□□□ -0.32
CLN3-244ENST00000636147 FBXO31Q5XUX0 539 aaPredicted RBP13.04□□□□□ -0.32
CLN3-244ENST00000636147 PNMA6EA0A0J9YXQ4 647 aa13.04□□□□□ -0.32
CLN3-244ENST00000636147 VGLL3A8MV65 326 aa13.04□□□□□ -0.32
CLN3-244ENST00000636147 KIF18AQ8NI77 898 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms