RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 LIG1P18858 919 aa6.45□□□□□ -1.38
SCN1A-209ENST00000635750 LARP1BQ659C4 914 aaKnown RBP6.45□□□□□ -1.38
SCN1A-209ENST00000635750 WDR33Q9C0J8 1336 aaKnown RBP6.45□□□□□ -1.38
SCN1A-209ENST00000635750 SH3BP5O60239 455 aa6.45□□□□□ -1.38
SCN1A-209ENST00000635750 IDH1O75874 414 aaKnown RBP6.45□□□□□ -1.38
SCN1A-209ENST00000635750 MRE11P49959 708 aa6.45□□□□□ -1.38
SCN1A-209ENST00000635750 TAF12Q16514 161 aa6.45□□□□□ -1.38
SCN1A-209ENST00000635750 METTL24Q5JXM2 366 aa6.45□□□□□ -1.38
SCN1A-209ENST00000635750 C6orf163Q5TEZ5 329 aa6.45□□□□□ -1.38
SCN1A-209ENST00000635750 BLOC1S2Q6QNY1 142 aa6.45□□□□□ -1.38
SCN1A-209ENST00000635750 ANKLE2Q86XL3 938 aa6.45□□□□□ -1.38
SCN1A-209ENST00000635750 SYCP3Q8IZU3 236 aa6.45□□□□□ -1.38
SCN1A-209ENST00000635750 CCDC102AQ96A19 550 aa6.45□□□□□ -1.38
SCN1A-209ENST00000635750 TIGD1Q96MW7 591 aa6.45□□□□□ -1.38
SCN1A-209ENST00000635750 CABP2Q9NPB3 220 aa6.45□□□□□ -1.38
SCN1A-209ENST00000635750 POGZQ7Z3K3 1410 aa6.45□□□□□ -1.38
SCN1A-209ENST00000635750 CNTLNQ9NXG0 1405 aa6.45□□□□□ -1.38
SCN1A-209ENST00000635750 RAPGEF2Q9Y4G8 1499 aa6.45□□□□□ -1.38
SCN1A-209ENST00000635750 SHTN1A0MZ66 631 aa6.45□□□□□ -1.38
SCN1A-209ENST00000635750 ZNF692Q9BU19 519 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-209ENST00000635750 SYNCQ9H7C4 482 aa6.45□□□□□ -1.38
SCN1A-209ENST00000635750 IFIT1P09914 478 aaKnown RBP6.45□□□□□ -1.38
SCN1A-209ENST00000635750 CCDC82Q8N4S0 544 aa6.45□□□□□ -1.38
SCN1A-209ENST00000635750 PPP1R14CQ8TAE6 165 aa6.45□□□□□ -1.38
SCN1A-209ENST00000635750 GCC1Q96CN9 775 aa6.45□□□□□ -1.38
SCN1A-209ENST00000635750 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.45□□□□□ -1.38
SCN1A-209ENST00000635750 ZBED9Q6R2W3 1325 aa6.45□□□□□ -1.38
SCN1A-209ENST00000635750 ARHGAP5Q13017 1502 aa6.44□□□□□ -1.38
SCN1A-209ENST00000635750 ZNF530Q6P9A1 599 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-209ENST00000635750 IQCA1Q86XH1 822 aa6.44□□□□□ -1.38
SCN1A-209ENST00000635750 PUF60Q9UHX1 559 aaKnown RBP6.44□□□□□ -1.38
SCN1A-209ENST00000635750 SAMM50Q9Y512 469 aa6.44□□□□□ -1.38
SCN1A-209ENST00000635750 CCDC7Q96M83 1385 aa6.44□□□□□ -1.38
SCN1A-209ENST00000635750 B4DLN1 442 aa6.44□□□□□ -1.38
SCN1A-209ENST00000635750 MRPL12P52815 198 aaKnown RBP6.44□□□□□ -1.38
SCN1A-209ENST00000635750 CEP135Q66GS9 1140 aa6.44□□□□□ -1.38
SCN1A-209ENST00000635750 TTC16Q8NEE8 873 aa6.44□□□□□ -1.38
SCN1A-209ENST00000635750 EXOC6Q8TAG9 804 aa6.44□□□□□ -1.38
SCN1A-209ENST00000635750 GRM1Q13255 1194 aa6.44□□□□□ -1.38
SCN1A-209ENST00000635750 AACSQ86V21 672 aa6.44□□□□□ -1.38
SCN1A-209ENST00000635750 CCDC12Q8WUD4 166 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-209ENST00000635750 CABP5Q9NP86 173 aa6.44□□□□□ -1.38
SCN1A-209ENST00000635750 CLEC11AQ9Y240 323 aa6.44□□□□□ -1.38
SCN1A-209ENST00000635750 USO1O60763 962 aaKnown RBP6.44□□□□□ -1.38
SCN1A-209ENST00000635750 BICD1Q96G01 975 aa6.44□□□□□ -1.38
SCN1A-209ENST00000635750 TTC12Q9H892 705 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-209ENST00000635750 SPINK5Q9NQ38 1064 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-209ENST00000635750 U3KPZ7 1027 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-209ENST00000635750 MINDY4BA8MYZ0 360 aa6.44□□□□□ -1.38
SCN1A-209ENST00000635750 NDC80O14777 642 aa6.44□□□□□ -1.38
SCN1A-209ENST00000635750 SPATA32Q96LK8 384 aa6.44□□□□□ -1.38
SCN1A-209ENST00000635750 UPF3BQ9BZI7 483 aaKnown RBP6.44□□□□□ -1.38
SCN1A-209ENST00000635750 TMOD3Q9NYL9 352 aa6.44□□□□□ -1.38
SCN1A-209ENST00000635750 AMPD3Q01432 767 aa6.44□□□□□ -1.38
SCN1A-209ENST00000635750 CCDC174Q6PII3 467 aa6.44□□□□□ -1.38
SCN1A-209ENST00000635750 OTUD6BQ8N6M0 293 aa6.44□□□□□ -1.38
SCN1A-209ENST00000635750 CTCFLQ8NI51 663 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-209ENST00000635750 GGNBP2Q9H3C7 697 aa6.44□□□□□ -1.38
SCN1A-209ENST00000635750 UQCRHLA0A096LP55 91 aa6.43□□□□□ -1.38
SCN1A-209ENST00000635750 PRPF40AO75400 957 aaKnown RBP6.43□□□□□ -1.38
SCN1A-209ENST00000635750 SNX16P57768 344 aa6.43□□□□□ -1.38
SCN1A-209ENST00000635750 TMCO3Q6UWJ1 677 aa6.43□□□□□ -1.38
SCN1A-209ENST00000635750 SCAPERQ9BY12 1400 aa6.43□□□□□ -1.38
SCN1A-209ENST00000635750 HLA-DOAP06340 250 aa6.43□□□□□ -1.38
SCN1A-209ENST00000635750 USP37Q86T82 979 aa6.43□□□□□ -1.38
SCN1A-209ENST00000635750 BBXQ8WY36 941 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-209ENST00000635750 CALML4Q96GE6 196 aa6.43□□□□□ -1.38
SCN1A-209ENST00000635750 NAA15Q9BXJ9 866 aaKnown RBP6.43□□□□□ -1.38
SCN1A-209ENST00000635750 CCDC172P0C7W6 258 aa6.43□□□□□ -1.38
SCN1A-209ENST00000635750 NOC2LQ9Y3T9 749 aaKnown RBP6.43□□□□□ -1.38
SCN1A-209ENST00000635750 PRC1O43663 620 aa6.43□□□□□ -1.38
SCN1A-209ENST00000635750 SLC4A2P04920 1241 aa6.43□□□□□ -1.38
SCN1A-209ENST00000635750 CASQ1P31415 396 aa6.43□□□□□ -1.38
SCN1A-209ENST00000635750 TWISTNBQ3B726 338 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-209ENST00000635750 CCDC14Q49A88 953 aa6.43□□□□□ -1.38
SCN1A-209ENST00000635750 ALS2CR12Q96Q35 445 aa6.43□□□□□ -1.38
SCN1A-209ENST00000635750 SLC5A1P13866 664 aa6.43□□□□□ -1.38
SCN1A-209ENST00000635750 MICALCLQ6ZW33 695 aa6.43□□□□□ -1.38
SCN1A-209ENST00000635750 CKAP2LQ8IYA6 745 aa6.43□□□□□ -1.38
SCN1A-209ENST00000635750 ZSCAN31Q96LW9 406 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-209ENST00000635750 PLVAPQ9BX97 442 aa6.43□□□□□ -1.38
SCN1A-209ENST00000635750 NAPBQ9H115 298 aa6.43□□□□□ -1.38
SCN1A-209ENST00000635750 STX6O43752 255 aa6.43□□□□□ -1.38
SCN1A-209ENST00000635750 KIF5CO60282 957 aa6.43□□□□□ -1.38
SCN1A-209ENST00000635750 PAFAH1B1P43034 410 aa6.43□□□□□ -1.38
SCN1A-209ENST00000635750 MAP3K12Q12852 859 aa6.43□□□□□ -1.38
SCN1A-209ENST00000635750 FHOD3Q2V2M9 1422 aa6.42□□□□□ -1.38
SCN1A-209ENST00000635750 GTPBP4Q9BZE4 634 aaKnown RBP6.42□□□□□ -1.38
SCN1A-209ENST00000635750 NLRP5P59047 1200 aa6.42□□□□□ -1.38
SCN1A-209ENST00000635750 ST5P78524 1137 aa6.42□□□□□ -1.38
SCN1A-209ENST00000635750 CFAP100Q494V2 611 aa6.42□□□□□ -1.38
SCN1A-209ENST00000635750 BIRC2Q13490 618 aa6.42□□□□□ -1.38
SCN1A-209ENST00000635750 CCDC83Q8IWF9 413 aa6.42□□□□□ -1.38
SCN1A-209ENST00000635750 TBC1D5Q92609 795 aa6.42□□□□□ -1.38
SCN1A-209ENST00000635750 PDRG1Q9NUG6 133 aa6.42□□□□□ -1.38
SCN1A-209ENST00000635750 TRAF1Q13077 416 aa6.42□□□□□ -1.38
SCN1A-209ENST00000635750 CATIPQ7Z7H3 387 aa6.42□□□□□ -1.38
SCN1A-209ENST00000635750 DDX11Q96FC9 970 aa6.42□□□□□ -1.38
SCN1A-209ENST00000635750 SPECC1Q5M775 1068 aa6.42□□□□□ -1.38
SCN1A-209ENST00000635750 PPP4R3BQ5MIZ7 849 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms