RNA–Protein interactions for RNA: ENST00000622555.1

PTCHD3-202, Transcript of patched domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene PTCHD3, Length 1,720 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3-202ENST00000622555 KDM3BQ7LBC6 1761 aa23.08■■□□□ 1.29
PTCHD3-202ENST00000622555 BABAM1Q9NWV8 329 aa23.08■■□□□ 1.28
PTCHD3-202ENST00000622555 CABP4P57796 275 aa23.07■■□□□ 1.28
PTCHD3-202ENST00000622555 BTBD11A6QL63 1104 aa23.06■■□□□ 1.28
PTCHD3-202ENST00000622555 ERVV-2B6SEH9 535 aa23.06■■□□□ 1.28
PTCHD3-202ENST00000622555 MARCH10Q8NA82 808 aaPredicted RBP23.06■■□□□ 1.28
PTCHD3-202ENST00000622555 NFATC2IPQ8NCF5 419 aa23.06■■□□□ 1.28
PTCHD3-202ENST00000622555 ONECUT3O60422 494 aaPredicted RBP23.05■■□□□ 1.28
PTCHD3-202ENST00000622555 ITGB4P16144 1822 aa23.05■■□□□ 1.28
PTCHD3-202ENST00000622555 RCAN3Q9UKA8 241 aa23.05■■□□□ 1.28
PTCHD3-202ENST00000622555 DOT1LQ8TEK3 1739 aa23.04■■□□□ 1.28
PTCHD3-202ENST00000622555 SEPT12Q8IYM1 358 aa23.04■■□□□ 1.28
PTCHD3-202ENST00000622555 RBM6P78332 1123 aaKnown RBP23.03■■□□□ 1.28
PTCHD3-202ENST00000622555 ILDR1Q86SU0 546 aaPredicted RBP23.02■■□□□ 1.28
PTCHD3-202ENST00000622555 CT47B1P0C2W7 299 aaPredicted RBP23.01■■□□□ 1.27
PTCHD3-202ENST00000622555 C8orf58Q8NAV2 365 aa23.01■■□□□ 1.27
PTCHD3-202ENST00000622555 ELL2O00472 640 aaPredicted RBP23■■□□□ 1.27
PTCHD3-202ENST00000622555 TSPYL6Q8N831 410 aa23■■□□□ 1.27
PTCHD3-202ENST00000622555 TMOD3Q9NYL9 352 aa23■■□□□ 1.27
PTCHD3-202ENST00000622555 KCNQ3O43525 872 aa22.99■■□□□ 1.27
PTCHD3-202ENST00000622555 KRT24Q2M2I5 525 aa22.99■■□□□ 1.27
PTCHD3-202ENST00000622555 BRWD3Q6RI45 1802 aa22.99■■□□□ 1.27
PTCHD3-202ENST00000622555 RGS17Q9UGC6 210 aaPredicted RBP22.99■■□□□ 1.27
PTCHD3-202ENST00000622555 SUPT16HQ9Y5B9 1047 aaKnown RBP22.99■■□□□ 1.27
PTCHD3-202ENST00000622555 TWISTNBQ3B726 338 aaPredicted RBP22.99■■□□□ 1.27
PTCHD3-202ENST00000622555 SLC39A6Q13433 755 aa22.98■■□□□ 1.27
PTCHD3-202ENST00000622555 RXRBP28702 533 aa22.97■■□□□ 1.27
PTCHD3-202ENST00000622555 ZNF790Q6PG37 636 aa22.97■■□□□ 1.27
PTCHD3-202ENST00000622555 SYTL4Q96C24 671 aaPredicted RBP22.97■■□□□ 1.27
PTCHD3-202ENST00000622555 PAPPAQ13219 1627 aa22.97■■□□□ 1.27
PTCHD3-202ENST00000622555 EIF4A1P60842 406 aaKnown RBP22.96■■□□□ 1.27
PTCHD3-202ENST00000622555 TTC5Q8N0Z6 440 aa22.96■■□□□ 1.27
PTCHD3-202ENST00000622555 VAMP4O75379 141 aa22.96■■□□□ 1.27
PTCHD3-202ENST00000622555 PRIM1P49642 420 aaKnown RBP22.96■■□□□ 1.27
PTCHD3-202ENST00000622555 ACSBG1Q96GR2 724 aa22.96■■□□□ 1.27
PTCHD3-202ENST00000622555 PIGBQ92521 554 aa22.95■■□□□ 1.26
PTCHD3-202ENST00000622555 RARSP54136 660 aaKnown RBP22.94■■□□□ 1.26
PTCHD3-202ENST00000622555 BCL9O00512 1426 aa22.94■■□□□ 1.26
PTCHD3-202ENST00000622555 UBR2Q8IWV8 1755 aa22.94■■□□□ 1.26
PTCHD3-202ENST00000622555 POTEAQ6S8J7 498 aa22.94■■□□□ 1.26
PTCHD3-202ENST00000622555 FAM182BQ5T319 152 aa22.93■■□□□ 1.26
PTCHD3-202ENST00000622555 ZNF428Q96B54 188 aa22.93■■□□□ 1.26
PTCHD3-202ENST00000622555 BCAR3O75815 825 aa22.91■■□□□ 1.26
PTCHD3-202ENST00000622555 KRT27Q7Z3Y8 459 aa22.91■■□□□ 1.26
PTCHD3-202ENST00000622555 BCL2L13Q9BXK5 485 aa22.91■■□□□ 1.26
PTCHD3-202ENST00000622555 SOS1Q07889 1333 aaPredicted RBP22.91■■□□□ 1.26
PTCHD3-202ENST00000622555 SBF2Q86WG5 1849 aa22.9■■□□□ 1.26
PTCHD3-202ENST00000622555 SSH1Q8WYL5 1049 aa22.9■■□□□ 1.26
PTCHD3-202ENST00000622555 ZNF496Q96IT1 587 aaPredicted RBP22.9■■□□□ 1.26
PTCHD3-202ENST00000622555 FMNL2Q96PY5 1086 aa22.9■■□□□ 1.26
PTCHD3-202ENST00000622555 SMC4Q9NTJ3 1288 aa22.9■■□□□ 1.26
PTCHD3-202ENST00000622555 HEG1Q9ULI3 1381 aa22.89■■□□□ 1.26
PTCHD3-202ENST00000622555 ALDH1L2Q3SY69 923 aa22.89■■□□□ 1.26
PTCHD3-202ENST00000622555 ASAP1Q9ULH1 1129 aa22.89■■□□□ 1.26
PTCHD3-202ENST00000622555 C5P01031 1676 aa22.89■■□□□ 1.25
PTCHD3-202ENST00000622555 NHSQ6T4R5 1651 aa22.89■■□□□ 1.25
PTCHD3-202ENST00000622555 HOXB7P09629 217 aa22.88■■□□□ 1.25
PTCHD3-202ENST00000622555 KCPQ6ZWJ8 1503 aa22.88■■□□□ 1.25
PTCHD3-202ENST00000622555 RGS12O14924 1447 aa22.88■■□□□ 1.25
PTCHD3-202ENST00000622555 RNF123Q5XPI4 1314 aa22.88■■□□□ 1.25
PTCHD3-202ENST00000622555 TCERG1O14776 1098 aaKnown RBP22.88■■□□□ 1.25
PTCHD3-202ENST00000622555 KCNQ2O43526 872 aa22.88■■□□□ 1.25
PTCHD3-202ENST00000622555 GIGYF1O75420 1035 aaPredicted RBP22.88■■□□□ 1.25
PTCHD3-202ENST00000622555 RRP1P56182 461 aaKnown RBP22.88■■□□□ 1.25
PTCHD3-202ENST00000622555 ATG3Q9NT62 314 aa22.88■■□□□ 1.25
PTCHD3-202ENST00000622555 PTCD1O75127 700 aaKnown RBP22.86■■□□□ 1.25
PTCHD3-202ENST00000622555 NECTIN2Q92692 538 aa22.85■■□□□ 1.25
PTCHD3-202ENST00000622555 CACNA1FO60840 1977 aa22.85■■□□□ 1.25
PTCHD3-202ENST00000622555 PRAMEF22A3QJZ6 481 aa22.85■■□□□ 1.25
PTCHD3-202ENST00000622555 SNRPA1P09661 255 aaKnown RBP22.85■■□□□ 1.25
PTCHD3-202ENST00000622555 EIF2S2P20042 333 aaKnown RBP22.85■■□□□ 1.25
PTCHD3-202ENST00000622555 HDGFL1Q5TGJ6 251 aa22.85■■□□□ 1.25
PTCHD3-202ENST00000622555 CCDC30Q5VVM6 783 aa22.85■■□□□ 1.25
PTCHD3-202ENST00000622555 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.85■■□□□ 1.25
PTCHD3-202ENST00000622555 BTAF1O14981 1849 aa22.84■■□□□ 1.25
PTCHD3-202ENST00000622555 LAMB4A4D0S4 1761 aa22.84■■□□□ 1.25
PTCHD3-202ENST00000622555 PLIN1O60240 522 aa22.84■■□□□ 1.25
PTCHD3-202ENST00000622555 FAM196AQ6ZSG2 479 aa22.84■■□□□ 1.25
PTCHD3-202ENST00000622555 CANXP27824 592 aaKnown RBP22.83■■□□□ 1.25
PTCHD3-202ENST00000622555 MRPL50Q8N5N7 158 aaKnown RBP22.83■■□□□ 1.25
PTCHD3-202ENST00000622555 FRAT1Q92837 279 aaPredicted RBP22.83■■□□□ 1.25
PTCHD3-202ENST00000622555 CHMP4AQ9BY43 222 aa22.83■■□□□ 1.25
PTCHD3-202ENST00000622555 NEFLP07196 543 aa22.82■■□□□ 1.24
PTCHD3-202ENST00000622555 RBM42Q9BTD8 480 aaKnown RBP22.82■■□□□ 1.24
PTCHD3-202ENST00000622555 STK31Q9BXU1 1019 aa22.82■■□□□ 1.24
PTCHD3-202ENST00000622555 PTF1AQ7RTS3 328 aa22.81■■□□□ 1.24
PTCHD3-202ENST00000622555 KIF16BQ96L93 1317 aa22.81■■□□□ 1.24
PTCHD3-202ENST00000622555 BRPF1P55201 1214 aaPredicted RBP22.8■■□□□ 1.24
PTCHD3-202ENST00000622555 SMARCC1Q92922 1105 aaPredicted RBP22.8■■□□□ 1.24
PTCHD3-202ENST00000622555 SLC4A2P04920 1241 aa22.79■■□□□ 1.24
PTCHD3-202ENST00000622555 IRX6P78412 446 aaPredicted RBP22.79■■□□□ 1.24
PTCHD3-202ENST00000622555 PALLDQ8WX93 1383 aa22.79■■□□□ 1.24
PTCHD3-202ENST00000622555 NOB1Q9ULX3 412 aaKnown RBP22.79■■□□□ 1.24
PTCHD3-202ENST00000622555 USP16Q9Y5T5 823 aa22.79■■□□□ 1.24
PTCHD3-202ENST00000622555 VSIG10Q8N0Z9 540 aa22.78■■□□□ 1.24
PTCHD3-202ENST00000622555 ZKSCAN2Q63HK3 967 aa22.77■■□□□ 1.24
PTCHD3-202ENST00000622555 CHPF2Q9P2E5 772 aa22.77■■□□□ 1.24
PTCHD3-202ENST00000622555 IPO8O15397 1037 aaKnown RBP22.77■■□□□ 1.23
PTCHD3-202ENST00000622555 BCL11BQ9C0K0 894 aaPredicted RBP22.77■■□□□ 1.23
PTCHD3-202ENST00000622555 TJP1Q07157 1748 aa22.76■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms