RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 COPS6Q7L5N1 327 aa11.04□□□□□ -0.64
GGA3-223ENST00000621870 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.04□□□□□ -0.64
GGA3-223ENST00000621870 ANKRD18BA2A2Z9 1011 aa11.04□□□□□ -0.64
GGA3-223ENST00000621870 TRIM27P14373 513 aa11.04□□□□□ -0.64
GGA3-223ENST00000621870 LTKP29376 864 aa11.04□□□□□ -0.64
GGA3-223ENST00000621870 NBPF6Q5VWK0 638 aa11.04□□□□□ -0.64
GGA3-223ENST00000621870 NBPF5PQ86XG9 351 aaPredicted RBP11.04□□□□□ -0.64
GGA3-223ENST00000621870 NBPF4Q96M43 638 aa11.04□□□□□ -0.64
GGA3-223ENST00000621870 EYA1Q99502 592 aa11.04□□□□□ -0.64
GGA3-223ENST00000621870 SDF4Q9BRK5 362 aa11.04□□□□□ -0.64
GGA3-223ENST00000621870 AKAP2Q9Y2D5 859 aa11.04□□□□□ -0.64
GGA3-223ENST00000621870 CYP46A1Q9Y6A2 500 aa11.04□□□□□ -0.64
GGA3-223ENST00000621870 PRAG1Q86YV5 1406 aa11.03□□□□□ -0.64
GGA3-223ENST00000621870 TPM3P06753 285 aa11.03□□□□□ -0.64
GGA3-223ENST00000621870 XAGE3Q8WTP9 111 aa11.03□□□□□ -0.64
GGA3-223ENST00000621870 PCMTD1Q96MG8 357 aaPredicted RBP11.03□□□□□ -0.64
GGA3-223ENST00000621870 SLAIN2Q9P270 581 aa11.03□□□□□ -0.64
GGA3-223ENST00000621870 MINDY4BA8MYZ0 360 aa11.03□□□□□ -0.64
GGA3-223ENST00000621870 BLOC1S2Q6QNY1 142 aa11.03□□□□□ -0.64
GGA3-223ENST00000621870 CARD14Q9BXL6 1004 aa11.03□□□□□ -0.64
GGA3-223ENST00000621870 SNRKQ9NRH2 765 aa11.03□□□□□ -0.64
GGA3-223ENST00000621870 GLRX3O76003 335 aaKnown RBP11.02□□□□□ -0.64
GGA3-223ENST00000621870 PIBF1Q8WXW3 757 aa11.02□□□□□ -0.64
GGA3-223ENST00000621870 UBAC1Q9BSL1 405 aa11.02□□□□□ -0.64
GGA3-223ENST00000621870 CFAP65Q6ZU64 1925 aaKnown RBP11.02□□□□□ -0.65
GGA3-223ENST00000621870 CEBPZQ03701 1054 aaKnown RBP11.02□□□□□ -0.65
GGA3-223ENST00000621870 DDX46Q7L014 1031 aaKnown RBP11.02□□□□□ -0.65
GGA3-223ENST00000621870 CWC25Q9NXE8 425 aaPredicted RBP11.02□□□□□ -0.65
GGA3-223ENST00000621870 MTHFSDQ2M296 383 aaKnown RBP11.02□□□□□ -0.65
GGA3-223ENST00000621870 DZIP1Q86YF9 867 aaKnown RBP11.02□□□□□ -0.65
GGA3-223ENST00000621870 CHPF2Q9P2E5 772 aa11.02□□□□□ -0.65
GGA3-223ENST00000621870 PDCP20941 246 aa11.01□□□□□ -0.65
GGA3-223ENST00000621870 HOOK1Q9UJC3 728 aaKnown RBP11.01□□□□□ -0.65
GGA3-223ENST00000621870 FLT4P35916 1363 aa11.01□□□□□ -0.65
GGA3-223ENST00000621870 YTHDC2Q9H6S0 1430 aaKnown RBP11.01□□□□□ -0.65
GGA3-223ENST00000621870 MX1P20591 662 aa11.01□□□□□ -0.65
GGA3-223ENST00000621870 USP5P45974 858 aa11.01□□□□□ -0.65
GGA3-223ENST00000621870 AKAP4Q5JQC9 854 aa11.01□□□□□ -0.65
GGA3-223ENST00000621870 PPP1R42Q7Z4L9 355 aa11.01□□□□□ -0.65
GGA3-223ENST00000621870 TRIM22Q8IYM9 498 aa11.01□□□□□ -0.65
GGA3-223ENST00000621870 NOC3LQ8WTT2 800 aaKnown RBP11.01□□□□□ -0.65
GGA3-223ENST00000621870 CDC5LQ99459 802 aaKnown RBP11.01□□□□□ -0.65
GGA3-223ENST00000621870 TFCP2L1Q9NZI6 479 aa11.01□□□□□ -0.65
GGA3-223ENST00000621870 CTNNA3Q9UI47 895 aa11.01□□□□□ -0.65
GGA3-223ENST00000621870 NPATQ14207 1427 aa11.01□□□□□ -0.65
GGA3-223ENST00000621870 TPM2P07951 284 aa11□□□□□ -0.65
GGA3-223ENST00000621870 RABEP1Q15276 862 aa11□□□□□ -0.65
GGA3-223ENST00000621870 SKOR2Q2VWA4 1001 aaPredicted RBP11□□□□□ -0.65
GGA3-223ENST00000621870 SKAP1Q86WV1 359 aa11□□□□□ -0.65
GGA3-223ENST00000621870 SMARCC1Q92922 1105 aaPredicted RBP11□□□□□ -0.65
GGA3-223ENST00000621870 JAKMIP1Q96N16 626 aaKnown RBP11□□□□□ -0.65
GGA3-223ENST00000621870 CCDC69A6NI79 296 aa11□□□□□ -0.65
GGA3-223ENST00000621870 TPM1P09493 284 aa11□□□□□ -0.65
GGA3-223ENST00000621870 CRACR2BQ8N4Y2 399 aaPredicted RBP11□□□□□ -0.65
GGA3-223ENST00000621870 ANKRD20A12PQ8NF67 263 aa11□□□□□ -0.65
GGA3-223ENST00000621870 PHACTR3Q96KR7 559 aa11□□□□□ -0.65
GGA3-223ENST00000621870 UPF3BQ9BZI7 483 aaKnown RBP11□□□□□ -0.65
GGA3-223ENST00000621870 ITSN2Q9NZM3 1697 aa11□□□□□ -0.65
GGA3-223ENST00000621870 FIBPO43427 364 aa11□□□□□ -0.65
GGA3-223ENST00000621870 POLR3DP05423 398 aaPredicted RBP11□□□□□ -0.65
GGA3-223ENST00000621870 KRT24Q2M2I5 525 aa11□□□□□ -0.65
GGA3-223ENST00000621870 SETDB2Q96T68 719 aa11□□□□□ -0.65
GGA3-223ENST00000621870 R3HCC1Q9Y3T6 440 aaKnown RBP10.99□□□□□ -0.65
GGA3-223ENST00000621870 YEATS2Q9ULM3 1422 aa10.99□□□□□ -0.65
GGA3-223ENST00000621870 MPHOSPH10O00566 681 aaKnown RBP10.99□□□□□ -0.65
GGA3-223ENST00000621870 SLC5A1P13866 664 aa10.99□□□□□ -0.65
GGA3-223ENST00000621870 MCM2P49736 904 aa10.99□□□□□ -0.65
GGA3-223ENST00000621870 MAP3K12Q12852 859 aa10.99□□□□□ -0.65
GGA3-223ENST00000621870 C8orf58Q8NAV2 365 aa10.99□□□□□ -0.65
GGA3-223ENST00000621870 SIRT1Q96EB6 747 aa10.99□□□□□ -0.65
GGA3-223ENST00000621870 NIP7Q9Y221 180 aaKnown RBP eCLIP10.99□□□□□ -0.65
GGA3-223ENST00000621870 IP6K1Q92551 441 aa10.99□□□□□ -0.65
GGA3-223ENST00000621870 CTTNBP2Q8WZ74 1663 aa10.98□□□□□ -0.65
GGA3-223ENST00000621870 A0A1W2PP64 1363 aa10.98□□□□□ -0.65
GGA3-223ENST00000621870 HOXC9P31274 260 aa10.98□□□□□ -0.65
GGA3-223ENST00000621870 NAPBQ9H115 298 aa10.98□□□□□ -0.65
GGA3-223ENST00000621870 MKNK2Q9HBH9 465 aa10.98□□□□□ -0.65
GGA3-223ENST00000621870 IQSEC3Q9UPP2 1182 aaPredicted RBP10.98□□□□□ -0.65
GGA3-223ENST00000621870 RAB11FIP3O75154 756 aa10.98□□□□□ -0.65
GGA3-223ENST00000621870 SASS6Q6UVJ0 657 aa10.98□□□□□ -0.65
GGA3-223ENST00000621870 PTPRCP08575 1304 aa10.98□□□□□ -0.65
GGA3-223ENST00000621870 CNKSR2Q8WXI2 1034 aa10.98□□□□□ -0.65
GGA3-223ENST00000621870 NLRP3Q96P20 1036 aa10.98□□□□□ -0.65
GGA3-223ENST00000621870 PRM3Q9NNZ6 103 aa10.98□□□□□ -0.65
GGA3-223ENST00000621870 STK38Q15208 465 aa10.97□□□□□ -0.65
GGA3-223ENST00000621870 FAM98CQ17RN3 349 aaKnown RBP10.97□□□□□ -0.65
GGA3-223ENST00000621870 SOGA3Q5TF21 947 aa10.97□□□□□ -0.65
GGA3-223ENST00000621870 IPO7O95373 1038 aaKnown RBP10.97□□□□□ -0.65
GGA3-223ENST00000621870 IMMTQ16891 758 aaKnown RBP10.97□□□□□ -0.65
GGA3-223ENST00000621870 PAXIP1Q6ZW49 1069 aaPredicted RBP10.97□□□□□ -0.65
GGA3-223ENST00000621870 CCDC82Q8N4S0 544 aa10.97□□□□□ -0.65
GGA3-223ENST00000621870 MEIS3Q99687 375 aa10.97□□□□□ -0.65
GGA3-223ENST00000621870 PIK3R4Q99570 1358 aa10.97□□□□□ -0.65
GGA3-223ENST00000621870 TTLL12Q14166 644 aaPredicted RBP10.97□□□□□ -0.65
GGA3-223ENST00000621870 LMBR1LQ6UX01 489 aa10.97□□□□□ -0.65
GGA3-223ENST00000621870 PUS7Q96PZ0 661 aaKnown RBP10.97□□□□□ -0.65
GGA3-223ENST00000621870 RTCBQ9Y3I0 505 aaKnown RBP10.97□□□□□ -0.65
GGA3-223ENST00000621870 NKTRP30414 1462 aaKnown RBP10.96□□□□□ -0.65
GGA3-223ENST00000621870 DCAF5Q96JK2 942 aa10.96□□□□□ -0.65
GGA3-223ENST00000621870 TMEM2Q9UHN6 1383 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms