RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 NEFMP07197 916 aa19.8■□□□□ 0.76
TRIM28-207ENST00000597136 NFE2L2Q16236 605 aa19.8■□□□□ 0.76
TRIM28-207ENST00000597136 TXNRD1Q16881 649 aa19.8■□□□□ 0.76
TRIM28-207ENST00000597136 MCM10Q7L590 875 aa19.8■□□□□ 0.76
TRIM28-207ENST00000597136 RUNDC1Q96C34 613 aa19.8■□□□□ 0.76
TRIM28-207ENST00000597136 RRP7AQ9Y3A4 280 aaKnown RBP19.8■□□□□ 0.76
TRIM28-207ENST00000597136 SENP3-EIF4A1A0A087X0R7 540 aa19.79■□□□□ 0.76
TRIM28-207ENST00000597136 SLC52A2Q9HAB3 445 aa19.79■□□□□ 0.76
TRIM28-207ENST00000597136 ATG3Q9NT62 314 aa19.79■□□□□ 0.76
TRIM28-207ENST00000597136 LRRC4BQ9NT99 713 aa19.79■□□□□ 0.76
TRIM28-207ENST00000597136 MRC1P22897 1456 aa19.78■□□□□ 0.76
TRIM28-207ENST00000597136 PAPPAQ13219 1627 aa19.78■□□□□ 0.76
TRIM28-207ENST00000597136 TUBGCP6Q96RT7 1819 aa19.78■□□□□ 0.76
TRIM28-207ENST00000597136 TMPOP42166 694 aaKnown RBP19.78■□□□□ 0.76
TRIM28-207ENST00000597136 NEUROD2Q15784 382 aa19.78■□□□□ 0.76
TRIM28-207ENST00000597136 C5P01031 1676 aa19.77■□□□□ 0.76
TRIM28-207ENST00000597136 MYH14Q7Z406 1995 aaKnown RBP19.77■□□□□ 0.76
TRIM28-207ENST00000597136 UBR2Q8IWV8 1755 aa19.76■□□□□ 0.75
TRIM28-207ENST00000597136 RIPK4P57078 832 aa19.76■□□□□ 0.75
TRIM28-207ENST00000597136 THUMPD2Q9BTF0 503 aaKnown RBP19.76■□□□□ 0.75
TRIM28-207ENST00000597136 CEMIPQ8WUJ3 1361 aa19.76■□□□□ 0.75
TRIM28-207ENST00000597136 PALLDQ8WX93 1383 aa19.76■□□□□ 0.75
TRIM28-207ENST00000597136 SLC39A6Q13433 755 aa19.75■□□□□ 0.75
TRIM28-207ENST00000597136 RTF1Q92541 710 aaKnown RBP19.75■□□□□ 0.75
TRIM28-207ENST00000597136 APAF1O14727 1248 aa19.74■□□□□ 0.75
TRIM28-207ENST00000597136 HTATSF1O43719 755 aaKnown RBP19.74■□□□□ 0.75
TRIM28-207ENST00000597136 TEFQ10587 303 aa19.74■□□□□ 0.75
TRIM28-207ENST00000597136 SMARCC1Q92922 1105 aaPredicted RBP19.74■□□□□ 0.75
TRIM28-207ENST00000597136 SLC4A9Q96Q91 983 aa19.73■□□□□ 0.75
TRIM28-207ENST00000597136 CCNL1Q9UK58 526 aaPredicted RBP19.73■□□□□ 0.75
TRIM28-207ENST00000597136 COL5A3P25940 1745 aaPredicted RBP19.72■□□□□ 0.75
TRIM28-207ENST00000597136 YTHDC1Q96MU7 727 aaKnown RBP19.72■□□□□ 0.75
TRIM28-207ENST00000597136 ANO8Q9HCE9 1232 aaPredicted RBP19.72■□□□□ 0.75
TRIM28-207ENST00000597136 TRIM35Q9UPQ4 493 aa19.72■□□□□ 0.75
TRIM28-207ENST00000597136 ZNF831Q5JPB2 1677 aa19.72■□□□□ 0.75
TRIM28-207ENST00000597136 KDM3BQ7LBC6 1761 aa19.72■□□□□ 0.75
TRIM28-207ENST00000597136 TJP1Q07157 1748 aa19.72■□□□□ 0.75
TRIM28-207ENST00000597136 LOC102724428A0A0B4J2F2 783 aa19.71■□□□□ 0.75
TRIM28-207ENST00000597136 PTCD1O75127 700 aaKnown RBP19.71■□□□□ 0.75
TRIM28-207ENST00000597136 SIK1P57059 783 aa19.71■□□□□ 0.75
TRIM28-207ENST00000597136 RBM42Q9BTD8 480 aaKnown RBP19.71■□□□□ 0.75
TRIM28-207ENST00000597136 KCNQ3O43525 872 aa19.7■□□□□ 0.74
TRIM28-207ENST00000597136 SLC27A3Q5K4L6 730 aa19.7■□□□□ 0.74
TRIM28-207ENST00000597136 MIS18AQ9NYP9 233 aa19.7■□□□□ 0.74
TRIM28-207ENST00000597136 UBR3Q6ZT12 1888 aa19.7■□□□□ 0.74
TRIM28-207ENST00000597136 PSDA5PKW4 1024 aaPredicted RBP19.7■□□□□ 0.74
TRIM28-207ENST00000597136 ITPK1Q13572 414 aa19.7■□□□□ 0.74
TRIM28-207ENST00000597136 KCPQ6ZWJ8 1503 aa19.69■□□□□ 0.74
TRIM28-207ENST00000597136 HNRNPUQ00839 825 aaKnown RBP eCLIP19.69■□□□□ 0.74
TRIM28-207ENST00000597136 C4BP0C0L5 1744 aa19.69■□□□□ 0.74
TRIM28-207ENST00000597136 ATP6V1AP38606 617 aa19.68■□□□□ 0.74
TRIM28-207ENST00000597136 R3HDM1Q15032 1099 aaKnown RBP19.68■□□□□ 0.74
TRIM28-207ENST00000597136 QSER1Q2KHR3 1735 aa19.67■□□□□ 0.74
TRIM28-207ENST00000597136 BTBD11A6QL63 1104 aa19.67■□□□□ 0.74
TRIM28-207ENST00000597136 TAF7Q15545 349 aaPredicted RBP19.66■□□□□ 0.74
TRIM28-207ENST00000597136 ZNF827Q17R98 1081 aa19.66■□□□□ 0.74
TRIM28-207ENST00000597136 NBPF14Q5TI25 921 aa19.66■□□□□ 0.74
TRIM28-207ENST00000597136 ZNF790Q6PG37 636 aa19.66■□□□□ 0.74
TRIM28-207ENST00000597136 LINC00116Q8NCU8 138 aa19.66■□□□□ 0.74
TRIM28-207ENST00000597136 SLC15A2Q16348 729 aa19.65■□□□□ 0.74
TRIM28-207ENST00000597136 AKT1S1Q96B36 256 aa19.65■□□□□ 0.74
TRIM28-207ENST00000597136 ZNF496Q96IT1 587 aaPredicted RBP19.65■□□□□ 0.74
TRIM28-207ENST00000597136 SALL2Q9Y467 1007 aaPredicted RBP19.65■□□□□ 0.74
TRIM28-207ENST00000597136 CICQ96RK0 1608 aaPredicted RBP19.65■□□□□ 0.74
TRIM28-207ENST00000597136 PDGFDQ9GZP0 370 aaPredicted RBP19.64■□□□□ 0.73
TRIM28-207ENST00000597136 LMOD3Q0VAK6 560 aa19.63■□□□□ 0.73
TRIM28-207ENST00000597136 SMIM5Q71RC9 77 aa19.63■□□□□ 0.73
TRIM28-207ENST00000597136 STK32BQ9NY57 414 aa19.63■□□□□ 0.73
TRIM28-207ENST00000597136 CASZ1Q86V15 1759 aa19.63■□□□□ 0.73
TRIM28-207ENST00000597136 TTC5Q8N0Z6 440 aa19.62■□□□□ 0.73
TRIM28-207ENST00000597136 AMIGO3Q86WK7 504 aa19.61■□□□□ 0.73
TRIM28-207ENST00000597136 DNAJC10Q8IXB1 793 aa19.61■□□□□ 0.73
TRIM28-207ENST00000597136 NGEFQ8N5V2 710 aa19.61■□□□□ 0.73
TRIM28-207ENST00000597136 SRCAPQ6ZRS2 3230 aa19.6■□□□□ 0.73
TRIM28-207ENST00000597136 NCBP3Q53F19 620 aaKnown RBP19.6■□□□□ 0.73
TRIM28-207ENST00000597136 LAS1LQ9Y4W2 734 aaKnown RBP19.6■□□□□ 0.73
TRIM28-207ENST00000597136 PRAMEF22A3QJZ6 481 aa19.59■□□□□ 0.73
TRIM28-207ENST00000597136 HEG1Q9ULI3 1381 aa19.58■□□□□ 0.73
TRIM28-207ENST00000597136 ZBED9Q6R2W3 1325 aa19.58■□□□□ 0.73
TRIM28-207ENST00000597136 TFCP2L1Q9NZI6 479 aa19.58■□□□□ 0.73
TRIM28-207ENST00000597136 WWC1Q8IX03 1113 aa19.57■□□□□ 0.72
TRIM28-207ENST00000597136 FMNL2Q96PY5 1086 aa19.57■□□□□ 0.72
TRIM28-207ENST00000597136 LAMB4A4D0S4 1761 aa19.57■□□□□ 0.72
TRIM28-207ENST00000597136 CHL1O00533 1208 aa19.57■□□□□ 0.72
TRIM28-207ENST00000597136 CCDC27Q2M243 656 aa19.57■□□□□ 0.72
TRIM28-207ENST00000597136 TSPYL4Q9UJ04 414 aa19.57■□□□□ 0.72
TRIM28-207ENST00000597136 PNPLA7Q6ZV29 1317 aa19.56■□□□□ 0.72
TRIM28-207ENST00000597136 C4AP0C0L4 1744 aa19.56■□□□□ 0.72
TRIM28-207ENST00000597136 CYP19A1P11511 503 aaPredicted RBP19.56■□□□□ 0.72
TRIM28-207ENST00000597136 CRKLP46109 303 aaKnown RBP19.56■□□□□ 0.72
TRIM28-207ENST00000597136 EIF4A1P60842 406 aaKnown RBP19.56■□□□□ 0.72
TRIM28-207ENST00000597136 VSIG10Q8N0Z9 540 aa19.56■□□□□ 0.72
TRIM28-207ENST00000597136 USP16Q9Y5T5 823 aa19.56■□□□□ 0.72
TRIM28-207ENST00000597136 INTS5Q6P9B9 1019 aaKnown RBP19.55■□□□□ 0.72
TRIM28-207ENST00000597136 AK7Q96M32 723 aa19.55■□□□□ 0.72
TRIM28-207ENST00000597136 ZNF521Q96K83 1311 aa19.54■□□□□ 0.72
TRIM28-207ENST00000597136 GNPATO15228 680 aa19.54■□□□□ 0.72
TRIM28-207ENST00000597136 ZNF853P0CG23 659 aa19.54■□□□□ 0.72
TRIM28-207ENST00000597136 RC3H1Q5TC82 1133 aaKnown RBP19.54■□□□□ 0.72
TRIM28-207ENST00000597136 COL23A1Q86Y22 540 aaPredicted RBP19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms