RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 MYT1Q01538 1121 aa18.97■□□□□ 0.63
VRK3-212ENST00000596814 CT47B1P0C2W7 299 aaPredicted RBP18.96■□□□□ 0.63
VRK3-212ENST00000596814 DOT1LQ8TEK3 1739 aa18.96■□□□□ 0.63
VRK3-212ENST00000596814 BTBD11A6QL63 1104 aa18.95■□□□□ 0.62
VRK3-212ENST00000596814 ERVV-2B6SEH9 535 aa18.94■□□□□ 0.62
VRK3-212ENST00000596814 CABP4P57796 275 aa18.94■□□□□ 0.62
VRK3-212ENST00000596814 ITGB4P16144 1822 aa18.94■□□□□ 0.62
VRK3-212ENST00000596814 NFATC2IPQ8NCF5 419 aa18.94■□□□□ 0.62
VRK3-212ENST00000596814 SUPT16HQ9Y5B9 1047 aaKnown RBP18.94■□□□□ 0.62
VRK3-212ENST00000596814 MARCH10Q8NA82 808 aaPredicted RBP18.93■□□□□ 0.62
VRK3-212ENST00000596814 PAPPAQ13219 1627 aa18.92■□□□□ 0.62
VRK3-212ENST00000596814 ONECUT3O60422 494 aaPredicted RBP18.91■□□□□ 0.62
VRK3-212ENST00000596814 TWISTNBQ3B726 338 aaPredicted RBP18.91■□□□□ 0.62
VRK3-212ENST00000596814 C8orf58Q8NAV2 365 aa18.91■□□□□ 0.62
VRK3-212ENST00000596814 TSPYL6Q8N831 410 aa18.91■□□□□ 0.62
VRK3-212ENST00000596814 KRT24Q2M2I5 525 aa18.9■□□□□ 0.62
VRK3-212ENST00000596814 KAT6BQ8WYB5 2073 aa18.9■□□□□ 0.62
VRK3-212ENST00000596814 SEPT12Q8IYM1 358 aa18.89■□□□□ 0.61
VRK3-212ENST00000596814 TMOD3Q9NYL9 352 aa18.89■□□□□ 0.61
VRK3-212ENST00000596814 UBR2Q8IWV8 1755 aa18.89■□□□□ 0.61
VRK3-212ENST00000596814 ELL2O00472 640 aaPredicted RBP18.88■□□□□ 0.61
VRK3-212ENST00000596814 KCNQ3O43525 872 aa18.88■□□□□ 0.61
VRK3-212ENST00000596814 VAMP4O75379 141 aa18.88■□□□□ 0.61
VRK3-212ENST00000596814 RARSP54136 660 aaKnown RBP18.88■□□□□ 0.61
VRK3-212ENST00000596814 EIF4A1P60842 406 aaKnown RBP18.88■□□□□ 0.61
VRK3-212ENST00000596814 RBM6P78332 1123 aaKnown RBP18.88■□□□□ 0.61
VRK3-212ENST00000596814 ZNF428Q96B54 188 aa18.88■□□□□ 0.61
VRK3-212ENST00000596814 ZNF790Q6PG37 636 aa18.88■□□□□ 0.61
VRK3-212ENST00000596814 RNF123Q5XPI4 1314 aa18.88■□□□□ 0.61
VRK3-212ENST00000596814 SLC39A6Q13433 755 aa18.87■□□□□ 0.61
VRK3-212ENST00000596814 TTC5Q8N0Z6 440 aa18.87■□□□□ 0.61
VRK3-212ENST00000596814 SOS1Q07889 1333 aaPredicted RBP18.87■□□□□ 0.61
VRK3-212ENST00000596814 BRWD3Q6RI45 1802 aa18.87■□□□□ 0.61
VRK3-212ENST00000596814 RRP1P56182 461 aaKnown RBP18.86■□□□□ 0.61
VRK3-212ENST00000596814 BCL9O00512 1426 aa18.86■□□□□ 0.61
VRK3-212ENST00000596814 BCAR3O75815 825 aa18.85■□□□□ 0.61
VRK3-212ENST00000596814 ALDH1L2Q3SY69 923 aa18.85■□□□□ 0.61
VRK3-212ENST00000596814 SYTL4Q96C24 671 aaPredicted RBP18.85■□□□□ 0.61
VRK3-212ENST00000596814 BCL2L13Q9BXK5 485 aa18.85■□□□□ 0.61
VRK3-212ENST00000596814 SMC4Q9NTJ3 1288 aa18.85■□□□□ 0.61
VRK3-212ENST00000596814 C5P01031 1676 aa18.84■□□□□ 0.61
VRK3-212ENST00000596814 KCPQ6ZWJ8 1503 aa18.84■□□□□ 0.61
VRK3-212ENST00000596814 HEG1Q9ULI3 1381 aa18.84■□□□□ 0.61
VRK3-212ENST00000596814 SSH1Q8WYL5 1049 aa18.84■□□□□ 0.61
VRK3-212ENST00000596814 PIGBQ92521 554 aa18.84■□□□□ 0.61
VRK3-212ENST00000596814 NHSQ6T4R5 1651 aa18.84■□□□□ 0.61
VRK3-212ENST00000596814 HOXB7P09629 217 aa18.83■□□□□ 0.61
VRK3-212ENST00000596814 PRIM1P49642 420 aaKnown RBP18.83■□□□□ 0.61
VRK3-212ENST00000596814 ACSBG1Q96GR2 724 aa18.83■□□□□ 0.61
VRK3-212ENST00000596814 RGS17Q9UGC6 210 aaPredicted RBP18.83■□□□□ 0.61
VRK3-212ENST00000596814 NEFLP07196 543 aa18.83■□□□□ 0.6
VRK3-212ENST00000596814 RXRBP28702 533 aa18.83■□□□□ 0.6
VRK3-212ENST00000596814 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.83■□□□□ 0.6
VRK3-212ENST00000596814 LAMB4A4D0S4 1761 aa18.82■□□□□ 0.6
VRK3-212ENST00000596814 ZNF496Q96IT1 587 aaPredicted RBP18.82■□□□□ 0.6
VRK3-212ENST00000596814 FMNL2Q96PY5 1086 aa18.82■□□□□ 0.6
VRK3-212ENST00000596814 SBF2Q86WG5 1849 aa18.81■□□□□ 0.6
VRK3-212ENST00000596814 GIGYF1O75420 1035 aaPredicted RBP18.8■□□□□ 0.6
VRK3-212ENST00000596814 ILDR1Q86SU0 546 aaPredicted RBP18.8■□□□□ 0.6
VRK3-212ENST00000596814 KIF16BQ96L93 1317 aa18.8■□□□□ 0.6
VRK3-212ENST00000596814 CACNA1FO60840 1977 aa18.8■□□□□ 0.6
VRK3-212ENST00000596814 TCERG1O14776 1098 aaKnown RBP18.79■□□□□ 0.6
VRK3-212ENST00000596814 PLIN1O60240 522 aa18.79■□□□□ 0.6
VRK3-212ENST00000596814 CANXP27824 592 aaKnown RBP18.79■□□□□ 0.6
VRK3-212ENST00000596814 BRPF1P55201 1214 aaPredicted RBP18.79■□□□□ 0.6
VRK3-212ENST00000596814 HDGFL1Q5TGJ6 251 aa18.79■□□□□ 0.6
VRK3-212ENST00000596814 CCDC30Q5VVM6 783 aa18.79■□□□□ 0.6
VRK3-212ENST00000596814 POTEAQ6S8J7 498 aa18.79■□□□□ 0.6
VRK3-212ENST00000596814 KRT27Q7Z3Y8 459 aa18.79■□□□□ 0.6
VRK3-212ENST00000596814 CHMP4AQ9BY43 222 aa18.79■□□□□ 0.6
VRK3-212ENST00000596814 ATG3Q9NT62 314 aa18.79■□□□□ 0.6
VRK3-212ENST00000596814 ASAP1Q9ULH1 1129 aa18.79■□□□□ 0.6
VRK3-212ENST00000596814 RGS12O14924 1447 aa18.79■□□□□ 0.6
VRK3-212ENST00000596814 FAM182BQ5T319 152 aa18.78■□□□□ 0.6
VRK3-212ENST00000596814 MRPL50Q8N5N7 158 aaKnown RBP18.78■□□□□ 0.6
VRK3-212ENST00000596814 FRAT1Q92837 279 aaPredicted RBP18.78■□□□□ 0.6
VRK3-212ENST00000596814 BTAF1O14981 1849 aa18.78■□□□□ 0.6
VRK3-212ENST00000596814 SNRPA1P09661 255 aaKnown RBP18.77■□□□□ 0.6
VRK3-212ENST00000596814 STK31Q9BXU1 1019 aa18.77■□□□□ 0.6
VRK3-212ENST00000596814 KCNQ2O43526 872 aa18.77■□□□□ 0.59
VRK3-212ENST00000596814 PTCD1O75127 700 aaKnown RBP18.77■□□□□ 0.59
VRK3-212ENST00000596814 EIF2S2P20042 333 aaKnown RBP18.77■□□□□ 0.59
VRK3-212ENST00000596814 NECTIN2Q92692 538 aa18.77■□□□□ 0.59
VRK3-212ENST00000596814 PRAMEF22A3QJZ6 481 aa18.76■□□□□ 0.59
VRK3-212ENST00000596814 IRX6P78412 446 aaPredicted RBP18.76■□□□□ 0.59
VRK3-212ENST00000596814 ZKSCAN2Q63HK3 967 aa18.74■□□□□ 0.59
VRK3-212ENST00000596814 NOB1Q9ULX3 412 aaKnown RBP18.74■□□□□ 0.59
VRK3-212ENST00000596814 SLC4A2P04920 1241 aa18.74■□□□□ 0.59
VRK3-212ENST00000596814 FAM196AQ6ZSG2 479 aa18.74■□□□□ 0.59
VRK3-212ENST00000596814 PALLDQ8WX93 1383 aa18.73■□□□□ 0.59
VRK3-212ENST00000596814 IPO8O15397 1037 aaKnown RBP18.73■□□□□ 0.59
VRK3-212ENST00000596814 FKBP8Q14318 412 aa18.73■□□□□ 0.59
VRK3-212ENST00000596814 VSIG10Q8N0Z9 540 aa18.73■□□□□ 0.59
VRK3-212ENST00000596814 SMARCC1Q92922 1105 aaPredicted RBP18.73■□□□□ 0.59
VRK3-212ENST00000596814 RBM42Q9BTD8 480 aaKnown RBP18.73■□□□□ 0.59
VRK3-212ENST00000596814 GTF3C3Q9Y5Q9 886 aa18.73■□□□□ 0.59
VRK3-212ENST00000596814 TJP1Q07157 1748 aa18.73■□□□□ 0.59
VRK3-212ENST00000596814 CICQ96RK0 1608 aaPredicted RBP18.73■□□□□ 0.59
VRK3-212ENST00000596814 CHPF2Q9P2E5 772 aa18.72■□□□□ 0.59
VRK3-212ENST00000596814 ATF7IPQ6VMQ6 1270 aa18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms