RNA–Protein interactions for RNA: ENST00000583902.1

CASC3-209, Transcript of CASC3, exon junction complex subunit, humanhuman

TSL 2

Gene CASC3, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC3-209ENST00000583902 TAF7Q15545 349 aaPredicted RBP11.94□□□□□ -0.5
CASC3-209ENST00000583902 POTEHQ6S545 545 aa11.94□□□□□ -0.5
CASC3-209ENST00000583902 CACNA1FO60840 1977 aa11.94□□□□□ -0.5
CASC3-209ENST00000583902 ATRNO75882 1429 aa11.94□□□□□ -0.5
CASC3-209ENST00000583902 AFF2P51816 1311 aa11.93□□□□□ -0.5
CASC3-209ENST00000583902 RNMTO43148 476 aaKnown RBP11.93□□□□□ -0.5
CASC3-209ENST00000583902 ONECUT3O60422 494 aaPredicted RBP11.93□□□□□ -0.5
CASC3-209ENST00000583902 TEFQ10587 303 aa11.93□□□□□ -0.5
CASC3-209ENST00000583902 TNS2Q63HR2 1409 aa11.93□□□□□ -0.5
CASC3-209ENST00000583902 MRC1P22897 1456 aa11.92□□□□□ -0.5
CASC3-209ENST00000583902 DDB1Q16531 1140 aa11.92□□□□□ -0.5
CASC3-209ENST00000583902 CCDC9Q9Y3X0 531 aaKnown RBP11.92□□□□□ -0.5
CASC3-209ENST00000583902 HOXB7P09629 217 aa11.91□□□□□ -0.5
CASC3-209ENST00000583902 HMGB2P26583 209 aaKnown RBP11.91□□□□□ -0.5
CASC3-209ENST00000583902 IL17REQ8NFR9 667 aa11.91□□□□□ -0.5
CASC3-209ENST00000583902 GJD4Q96KN9 370 aaPredicted RBP11.91□□□□□ -0.5
CASC3-209ENST00000583902 SIPA1L3O60292 1781 aaPredicted RBP11.91□□□□□ -0.5
CASC3-209ENST00000583902 BCL9O00512 1426 aa11.91□□□□□ -0.5
CASC3-209ENST00000583902 SHANK3Q9BYB0 1731 aa11.91□□□□□ -0.5
CASC3-209ENST00000583902 FANCIQ9NVI1 1328 aa11.9□□□□□ -0.5
CASC3-209ENST00000583902 CYP27B1O15528 508 aa11.9□□□□□ -0.5
CASC3-209ENST00000583902 MKRN4PQ13434 485 aaPredicted RBP11.9□□□□□ -0.5
CASC3-209ENST00000583902 MCM10Q7L590 875 aa11.9□□□□□ -0.5
CASC3-209ENST00000583902 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.9□□□□□ -0.5
CASC3-209ENST00000583902 CDCA7LQ96GN5 454 aa11.9□□□□□ -0.5
CASC3-209ENST00000583902 USP35Q9P2H5 1018 aa11.9□□□□□ -0.5
CASC3-209ENST00000583902 BRPF1P55201 1214 aaPredicted RBP11.89□□□□□ -0.51
CASC3-209ENST00000583902 CHRDL2Q6WN34 429 aa11.89□□□□□ -0.51
CASC3-209ENST00000583902 SLC52A2Q9HAB3 445 aa11.89□□□□□ -0.51
CASC3-209ENST00000583902 RCAN3Q9UKA8 241 aa11.89□□□□□ -0.51
CASC3-209ENST00000583902 THSD7AQ9UPZ6 1657 aa11.89□□□□□ -0.51
CASC3-209ENST00000583902 KDM3BQ7LBC6 1761 aa11.88□□□□□ -0.51
CASC3-209ENST00000583902 ALDH1L2Q3SY69 923 aa11.88□□□□□ -0.51
CASC3-209ENST00000583902 MPRIPQ6WCQ1 1025 aa11.88□□□□□ -0.51
CASC3-209ENST00000583902 REM2Q8IYK8 340 aaPredicted RBP11.88□□□□□ -0.51
CASC3-209ENST00000583902 QTRT2Q9H974 415 aaKnown RBP11.88□□□□□ -0.51
CASC3-209ENST00000583902 MBIPQ9NS73 344 aa11.88□□□□□ -0.51
CASC3-209ENST00000583902 TSPYL4Q9UJ04 414 aa11.88□□□□□ -0.51
CASC3-209ENST00000583902 KAT6BQ8WYB5 2073 aa11.87□□□□□ -0.51
CASC3-209ENST00000583902 BTBD11A6QL63 1104 aa11.87□□□□□ -0.51
CASC3-209ENST00000583902 MS4A1P11836 297 aa11.87□□□□□ -0.51
CASC3-209ENST00000583902 CABP4P57796 275 aa11.87□□□□□ -0.51
CASC3-209ENST00000583902 RBM6P78332 1123 aaKnown RBP11.87□□□□□ -0.51
CASC3-209ENST00000583902 KDM6AO15550 1401 aaPredicted RBP11.86□□□□□ -0.51
CASC3-209ENST00000583902 DCTN1Q14203 1278 aa11.86□□□□□ -0.51
CASC3-209ENST00000583902 ERICH6BQ5W0A0 696 aa11.86□□□□□ -0.51
CASC3-209ENST00000583902 DDX54Q8TDD1 881 aaKnown RBP11.86□□□□□ -0.51
CASC3-209ENST00000583902 LGR6Q9HBX8 967 aa11.86□□□□□ -0.51
CASC3-209ENST00000583902 LAS1LQ9Y4W2 734 aaKnown RBP11.86□□□□□ -0.51
CASC3-209ENST00000583902 RNF123Q5XPI4 1314 aa11.86□□□□□ -0.51
CASC3-209ENST00000583902 GLI3P10071 1580 aa11.85□□□□□ -0.51
CASC3-209ENST00000583902 FAM98CQ17RN3 349 aaKnown RBP11.85□□□□□ -0.51
CASC3-209ENST00000583902 TTC5Q8N0Z6 440 aa11.85□□□□□ -0.51
CASC3-209ENST00000583902 THUMPD2Q9BTF0 503 aaKnown RBP11.85□□□□□ -0.51
CASC3-209ENST00000583902 SOCS7O14512 581 aa11.84□□□□□ -0.51
CASC3-209ENST00000583902 NEFLP07196 543 aa11.84□□□□□ -0.51
CASC3-209ENST00000583902 EXOSC9Q06265 439 aaKnown RBP11.84□□□□□ -0.51
CASC3-209ENST00000583902 TWISTNBQ3B726 338 aaPredicted RBP11.84□□□□□ -0.51
CASC3-209ENST00000583902 ZNF790Q6PG37 636 aa11.84□□□□□ -0.51
CASC3-209ENST00000583902 TMOD3Q9NYL9 352 aa11.84□□□□□ -0.51
CASC3-209ENST00000583902 ITGB4P16144 1822 aa11.83□□□□□ -0.51
CASC3-209ENST00000583902 HEG1Q9ULI3 1381 aa11.83□□□□□ -0.52
CASC3-209ENST00000583902 IPO8O15397 1037 aaKnown RBP11.83□□□□□ -0.52
CASC3-209ENST00000583902 VAMP4O75379 141 aa11.83□□□□□ -0.52
CASC3-209ENST00000583902 RARSP54136 660 aaKnown RBP11.83□□□□□ -0.52
CASC3-209ENST00000583902 VSIG10Q8N0Z9 540 aa11.83□□□□□ -0.52
CASC3-209ENST00000583902 NFATC2IPQ8NCF5 419 aa11.83□□□□□ -0.52
CASC3-209ENST00000583902 ARHGAP45Q92619 1136 aa11.83□□□□□ -0.52
CASC3-209ENST00000583902 TSR2Q969E8 191 aaKnown RBP11.83□□□□□ -0.52
CASC3-209ENST00000583902 TEX13AQ9BXU3 409 aaPredicted RBP11.83□□□□□ -0.52
CASC3-209ENST00000583902 KIF16BQ96L93 1317 aa11.83□□□□□ -0.52
CASC3-209ENST00000583902 EIF4A1P60842 406 aaKnown RBP11.82□□□□□ -0.52
CASC3-209ENST00000583902 CCDC30Q5VVM6 783 aa11.82□□□□□ -0.52
CASC3-209ENST00000583902 SMARCC1Q92922 1105 aaPredicted RBP11.82□□□□□ -0.52
CASC3-209ENST00000583902 FMNL2Q96PY5 1086 aa11.82□□□□□ -0.52
CASC3-209ENST00000583902 ERBB4Q15303 1308 aa11.82□□□□□ -0.52
CASC3-209ENST00000583902 PAPPAQ13219 1627 aa11.82□□□□□ -0.52
CASC3-209ENST00000583902 UBR2Q8IWV8 1755 aa11.82□□□□□ -0.52
CASC3-209ENST00000583902 SENP3-EIF4A1A0A087X0R7 540 aa11.81□□□□□ -0.52
CASC3-209ENST00000583902 RXRBP28702 533 aa11.81□□□□□ -0.52
CASC3-209ENST00000583902 AAMPQ13685 434 aa11.81□□□□□ -0.52
CASC3-209ENST00000583902 SEPT12Q8IYM1 358 aa11.81□□□□□ -0.52
CASC3-209ENST00000583902 MARCH10Q8NA82 808 aaPredicted RBP11.81□□□□□ -0.52
CASC3-209ENST00000583902 ZNF831Q5JPB2 1677 aa11.81□□□□□ -0.52
CASC3-209ENST00000583902 SNRPA1P09661 255 aaKnown RBP11.8□□□□□ -0.52
CASC3-209ENST00000583902 FAM196AQ6ZSG2 479 aa11.8□□□□□ -0.52
CASC3-209ENST00000583902 STK31Q9BXU1 1019 aa11.8□□□□□ -0.52
CASC3-209ENST00000583902 CHMP4BQ9H444 224 aaKnown RBP11.8□□□□□ -0.52
CASC3-209ENST00000583902 TOGARAM1Q9Y4F4 1720 aa11.8□□□□□ -0.52
CASC3-209ENST00000583902 A0A0G2JS52 829 aa11.79□□□□□ -0.52
CASC3-209ENST00000583902 GIGYF1O75420 1035 aaPredicted RBP11.79□□□□□ -0.52
CASC3-209ENST00000583902 MYT1Q01538 1121 aa11.79□□□□□ -0.52
CASC3-209ENST00000583902 PDE3AQ14432 1141 aa11.79□□□□□ -0.52
CASC3-209ENST00000583902 ILDR2Q71H61 639 aa11.79□□□□□ -0.52
CASC3-209ENST00000583902 C8orf58Q8NAV2 365 aa11.79□□□□□ -0.52
CASC3-209ENST00000583902 SUPT16HQ9Y5B9 1047 aaKnown RBP11.79□□□□□ -0.52
CASC3-209ENST00000583902 DOT1LQ8TEK3 1739 aa11.79□□□□□ -0.52
CASC3-209ENST00000583902 PTPRCP08575 1304 aa11.79□□□□□ -0.52
CASC3-209ENST00000583902 RRP1P56182 461 aaKnown RBP11.78□□□□□ -0.52
CASC3-209ENST00000583902 SMC4Q9NTJ3 1288 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms