RNA–Protein interactions for RNA: ENST00000580670.6

CDK5RAP3-219, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 5

Gene CDK5RAP3, Length 1,768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-219ENST00000580670 RARSP54136 660 aaKnown RBP17.85■□□□□ 0.45
CDK5RAP3-219ENST00000580670 TWISTNBQ3B726 338 aaPredicted RBP17.85■□□□□ 0.45
CDK5RAP3-219ENST00000580670 TRPC5Q9UL62 973 aaPredicted RBP17.85■□□□□ 0.45
CDK5RAP3-219ENST00000580670 RRP1P56182 461 aaKnown RBP17.84■□□□□ 0.45
CDK5RAP3-219ENST00000580670 KRT24Q2M2I5 525 aa17.84■□□□□ 0.45
CDK5RAP3-219ENST00000580670 NFATC2IPQ8NCF5 419 aa17.84■□□□□ 0.45
CDK5RAP3-219ENST00000580670 ATRNO75882 1429 aa17.84■□□□□ 0.45
CDK5RAP3-219ENST00000580670 MRC1P22897 1456 aa17.84■□□□□ 0.45
CDK5RAP3-219ENST00000580670 VAMP4O75379 141 aa17.84■□□□□ 0.45
CDK5RAP3-219ENST00000580670 BCAR3O75815 825 aa17.84■□□□□ 0.45
CDK5RAP3-219ENST00000580670 CABP4P57796 275 aa17.84■□□□□ 0.45
CDK5RAP3-219ENST00000580670 GJD4Q96KN9 370 aaPredicted RBP17.84■□□□□ 0.45
CDK5RAP3-219ENST00000580670 ERVV-2B6SEH9 535 aa17.83■□□□□ 0.44
CDK5RAP3-219ENST00000580670 KDM3BQ7LBC6 1761 aa17.83■□□□□ 0.44
CDK5RAP3-219ENST00000580670 ZNF428Q96B54 188 aa17.82■□□□□ 0.44
CDK5RAP3-219ENST00000580670 BCL2L13Q9BXK5 485 aa17.82■□□□□ 0.44
CDK5RAP3-219ENST00000580670 GLI3P10071 1580 aa17.82■□□□□ 0.44
CDK5RAP3-219ENST00000580670 A0A0G2JS52 829 aa17.81■□□□□ 0.44
CDK5RAP3-219ENST00000580670 KCNQ3O43525 872 aa17.81■□□□□ 0.44
CDK5RAP3-219ENST00000580670 IRX6P78412 446 aaPredicted RBP17.81■□□□□ 0.44
CDK5RAP3-219ENST00000580670 QTRT2Q9H974 415 aaKnown RBP17.81■□□□□ 0.44
CDK5RAP3-219ENST00000580670 PLIN1O60240 522 aa17.8■□□□□ 0.44
CDK5RAP3-219ENST00000580670 EIF4A1P60842 406 aaKnown RBP17.8■□□□□ 0.44
CDK5RAP3-219ENST00000580670 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.8■□□□□ 0.44
CDK5RAP3-219ENST00000580670 SSH1Q8WYL5 1049 aa17.8■□□□□ 0.44
CDK5RAP3-219ENST00000580670 SMC4Q9NTJ3 1288 aa17.8■□□□□ 0.44
CDK5RAP3-219ENST00000580670 FKBP8Q14318 412 aa17.79■□□□□ 0.44
CDK5RAP3-219ENST00000580670 ALDH1L2Q3SY69 923 aa17.79■□□□□ 0.44
CDK5RAP3-219ENST00000580670 MARCH10Q8NA82 808 aaPredicted RBP17.79■□□□□ 0.44
CDK5RAP3-219ENST00000580670 TOGARAM1Q9Y4F4 1720 aa17.79■□□□□ 0.44
CDK5RAP3-219ENST00000580670 SLC39A6Q13433 755 aa17.79■□□□□ 0.44
CDK5RAP3-219ENST00000580670 THSD7AQ9UPZ6 1657 aa17.78■□□□□ 0.44
CDK5RAP3-219ENST00000580670 ZNF790Q6PG37 636 aa17.78■□□□□ 0.44
CDK5RAP3-219ENST00000580670 TSHZ2Q9NRE2 1034 aa17.78■□□□□ 0.44
CDK5RAP3-219ENST00000580670 ZNF772Q68DY9 489 aaPredicted RBP17.77■□□□□ 0.44
CDK5RAP3-219ENST00000580670 TMOD3Q9NYL9 352 aa17.77■□□□□ 0.44
CDK5RAP3-219ENST00000580670 SOS1Q07889 1333 aaPredicted RBP17.76■□□□□ 0.43
CDK5RAP3-219ENST00000580670 CANXP27824 592 aaKnown RBP17.76■□□□□ 0.43
CDK5RAP3-219ENST00000580670 TTC5Q8N0Z6 440 aa17.76■□□□□ 0.43
CDK5RAP3-219ENST00000580670 FRAT1Q92837 279 aaPredicted RBP17.76■□□□□ 0.43
CDK5RAP3-219ENST00000580670 TCERG1O14776 1098 aaKnown RBP17.76■□□□□ 0.43
CDK5RAP3-219ENST00000580670 ONECUT3O60422 494 aaPredicted RBP17.75■□□□□ 0.43
CDK5RAP3-219ENST00000580670 KAT6BQ8WYB5 2073 aa17.74■□□□□ 0.43
CDK5RAP3-219ENST00000580670 MRPL50Q8N5N7 158 aaKnown RBP17.74■□□□□ 0.43
CDK5RAP3-219ENST00000580670 ITGB4P16144 1822 aa17.74■□□□□ 0.43
CDK5RAP3-219ENST00000580670 HOXB7P09629 217 aa17.74■□□□□ 0.43
CDK5RAP3-219ENST00000580670 PIGBQ92521 554 aa17.74■□□□□ 0.43
CDK5RAP3-219ENST00000580670 SYTL4Q96C24 671 aaPredicted RBP17.74■□□□□ 0.43
CDK5RAP3-219ENST00000580670 HEG1Q9ULI3 1381 aa17.73■□□□□ 0.43
CDK5RAP3-219ENST00000580670 KIF16BQ96L93 1317 aa17.73■□□□□ 0.43
CDK5RAP3-219ENST00000580670 BRPF1P55201 1214 aaPredicted RBP17.73■□□□□ 0.43
CDK5RAP3-219ENST00000580670 SEPT12Q8IYM1 358 aa17.73■□□□□ 0.43
CDK5RAP3-219ENST00000580670 DOT1LQ8TEK3 1739 aa17.73■□□□□ 0.43
CDK5RAP3-219ENST00000580670 GIGYF1O75420 1035 aaPredicted RBP17.72■□□□□ 0.43
CDK5RAP3-219ENST00000580670 PRIM1P49642 420 aaKnown RBP17.72■□□□□ 0.43
CDK5RAP3-219ENST00000580670 CCDC30Q5VVM6 783 aa17.72■□□□□ 0.43
CDK5RAP3-219ENST00000580670 ZNF496Q96IT1 587 aaPredicted RBP17.72■□□□□ 0.43
CDK5RAP3-219ENST00000580670 FMNL2Q96PY5 1086 aa17.72■□□□□ 0.43
CDK5RAP3-219ENST00000580670 NOB1Q9ULX3 412 aaKnown RBP17.72■□□□□ 0.43
CDK5RAP3-219ENST00000580670 PAPPAQ13219 1627 aa17.71■□□□□ 0.43
CDK5RAP3-219ENST00000580670 C20orf194Q5TEA3 1177 aa17.71■□□□□ 0.43
CDK5RAP3-219ENST00000580670 HDGFL1Q5TGJ6 251 aa17.71■□□□□ 0.43
CDK5RAP3-219ENST00000580670 ZKSCAN2Q63HK3 967 aa17.71■□□□□ 0.43
CDK5RAP3-219ENST00000580670 NECTIN2Q92692 538 aa17.71■□□□□ 0.43
CDK5RAP3-219ENST00000580670 ACSBG1Q96GR2 724 aa17.71■□□□□ 0.43
CDK5RAP3-219ENST00000580670 BCL9O00512 1426 aa17.71■□□□□ 0.43
CDK5RAP3-219ENST00000580670 EIF2S2P20042 333 aaKnown RBP17.71■□□□□ 0.43
CDK5RAP3-219ENST00000580670 STK31Q9BXU1 1019 aa17.71■□□□□ 0.43
CDK5RAP3-219ENST00000580670 IPO8O15397 1037 aaKnown RBP17.7■□□□□ 0.42
CDK5RAP3-219ENST00000580670 CHMP4AQ9BY43 222 aa17.7■□□□□ 0.42
CDK5RAP3-219ENST00000580670 PRAMEF22A3QJZ6 481 aa17.69■□□□□ 0.42
CDK5RAP3-219ENST00000580670 SLC4A2P04920 1241 aa17.69■□□□□ 0.42
CDK5RAP3-219ENST00000580670 RBM6P78332 1123 aaKnown RBP17.69■□□□□ 0.42
CDK5RAP3-219ENST00000580670 ASAP1Q9ULH1 1129 aa17.69■□□□□ 0.42
CDK5RAP3-219ENST00000580670 UBR2Q8IWV8 1755 aa17.69■□□□□ 0.42
CDK5RAP3-219ENST00000580670 SNRPA1P09661 255 aaKnown RBP17.68■□□□□ 0.42
CDK5RAP3-219ENST00000580670 PDE3AQ14432 1141 aa17.68■□□□□ 0.42
CDK5RAP3-219ENST00000580670 KCPQ6ZWJ8 1503 aa17.68■□□□□ 0.42
CDK5RAP3-219ENST00000580670 PTCD1O75127 700 aaKnown RBP17.68■□□□□ 0.42
CDK5RAP3-219ENST00000580670 ATF7IPQ6VMQ6 1270 aa17.68■□□□□ 0.42
CDK5RAP3-219ENST00000580670 ATG3Q9NT62 314 aa17.68■□□□□ 0.42
CDK5RAP3-219ENST00000580670 TNNQ9UQP3 1299 aa17.68■□□□□ 0.42
CDK5RAP3-219ENST00000580670 C5P01031 1676 aa17.67■□□□□ 0.42
CDK5RAP3-219ENST00000580670 TRIM27P14373 513 aa17.67■□□□□ 0.42
CDK5RAP3-219ENST00000580670 ERICH6BQ5W0A0 696 aa17.67■□□□□ 0.42
CDK5RAP3-219ENST00000580670 PANK1Q8TE04 598 aa17.67■□□□□ 0.42
CDK5RAP3-219ENST00000580670 CRBNQ96SW2 442 aa17.67■□□□□ 0.42
CDK5RAP3-219ENST00000580670 MS4A1P11836 297 aa17.66■□□□□ 0.42
CDK5RAP3-219ENST00000580670 FAM182BQ5T319 152 aa17.66■□□□□ 0.42
CDK5RAP3-219ENST00000580670 ARHGAP45Q92619 1136 aa17.66■□□□□ 0.42
CDK5RAP3-219ENST00000580670 CLUAP1Q96AJ1 413 aa17.66■□□□□ 0.42
CDK5RAP3-219ENST00000580670 FTSJ3Q8IY81 847 aaKnown RBP17.66■□□□□ 0.42
CDK5RAP3-219ENST00000580670 DZIP1LQ8IYY4 767 aaKnown RBP17.66■□□□□ 0.42
CDK5RAP3-219ENST00000580670 EXOC6Q8TAG9 804 aa17.66■□□□□ 0.42
CDK5RAP3-219ENST00000580670 KCNQ2O43526 872 aa17.65■□□□□ 0.42
CDK5RAP3-219ENST00000580670 CHPF2Q9P2E5 772 aa17.65■□□□□ 0.42
CDK5RAP3-219ENST00000580670 CACNA1FO60840 1977 aa17.64■□□□□ 0.42
CDK5RAP3-219ENST00000580670 RLBP1P12271 317 aa17.64■□□□□ 0.41
CDK5RAP3-219ENST00000580670 RXRBP28702 533 aa17.64■□□□□ 0.41
CDK5RAP3-219ENST00000580670 G2E3Q7L622 706 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms