RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 CT47B1P0C2W7 299 aaPredicted RBP20.95■□□□□ 0.94
SS18-211ENST00000578954 ILDR1Q86SU0 546 aaPredicted RBP20.95■□□□□ 0.94
SS18-211ENST00000578954 LAS1LQ9Y4W2 734 aaKnown RBP20.95■□□□□ 0.94
SS18-211ENST00000578954 TSPYL4Q9UJ04 414 aa20.94■□□□□ 0.94
SS18-211ENST00000578954 SEPT12Q8IYM1 358 aa20.93■□□□□ 0.94
SS18-211ENST00000578954 PAPPAQ13219 1627 aa20.93■□□□□ 0.94
SS18-211ENST00000578954 DOT1LQ8TEK3 1739 aa20.92■□□□□ 0.94
SS18-211ENST00000578954 CABP4P57796 275 aa20.92■□□□□ 0.94
SS18-211ENST00000578954 EXOSC9Q06265 439 aaKnown RBP20.92■□□□□ 0.94
SS18-211ENST00000578954 BTBD11A6QL63 1104 aa20.91■□□□□ 0.94
SS18-211ENST00000578954 ITGB4P16144 1822 aa20.91■□□□□ 0.94
SS18-211ENST00000578954 NFATC2IPQ8NCF5 419 aa20.91■□□□□ 0.94
SS18-211ENST00000578954 MIS18AQ9NYP9 233 aa20.91■□□□□ 0.94
SS18-211ENST00000578954 HEG1Q9ULI3 1381 aa20.89■□□□□ 0.93
SS18-211ENST00000578954 SOS1Q07889 1333 aaPredicted RBP20.89■□□□□ 0.93
SS18-211ENST00000578954 A0A0G2JS52 829 aa20.89■□□□□ 0.93
SS18-211ENST00000578954 MYT1Q01538 1121 aa20.89■□□□□ 0.93
SS18-211ENST00000578954 RXRBP28702 533 aa20.88■□□□□ 0.93
SS18-211ENST00000578954 ZNF428Q96B54 188 aa20.88■□□□□ 0.93
SS18-211ENST00000578954 BRWD3Q6RI45 1802 aa20.88■□□□□ 0.93
SS18-211ENST00000578954 UBR2Q8IWV8 1755 aa20.87■□□□□ 0.93
SS18-211ENST00000578954 EIF4A1P60842 406 aaKnown RBP20.87■□□□□ 0.93
SS18-211ENST00000578954 ZNF790Q6PG37 636 aa20.87■□□□□ 0.93
SS18-211ENST00000578954 POTEAQ6S8J7 498 aa20.87■□□□□ 0.93
SS18-211ENST00000578954 C8orf58Q8NAV2 365 aa20.87■□□□□ 0.93
SS18-211ENST00000578954 TMOD3Q9NYL9 352 aa20.87■□□□□ 0.93
SS18-211ENST00000578954 RCAN3Q9UKA8 241 aa20.87■□□□□ 0.93
SS18-211ENST00000578954 TSPYL6Q8N831 410 aa20.86■□□□□ 0.93
SS18-211ENST00000578954 RGS12O14924 1447 aa20.86■□□□□ 0.93
SS18-211ENST00000578954 KCNQ3O43525 872 aa20.85■□□□□ 0.93
SS18-211ENST00000578954 VAMP4O75379 141 aa20.85■□□□□ 0.93
SS18-211ENST00000578954 TWISTNBQ3B726 338 aaPredicted RBP20.85■□□□□ 0.93
SS18-211ENST00000578954 PIGBQ92521 554 aa20.85■□□□□ 0.93
SS18-211ENST00000578954 NHSQ6T4R5 1651 aa20.85■□□□□ 0.93
SS18-211ENST00000578954 KCPQ6ZWJ8 1503 aa20.84■□□□□ 0.93
SS18-211ENST00000578954 HOXB7P09629 217 aa20.84■□□□□ 0.93
SS18-211ENST00000578954 KRT24Q2M2I5 525 aa20.84■□□□□ 0.93
SS18-211ENST00000578954 RNF123Q5XPI4 1314 aa20.83■□□□□ 0.93
SS18-211ENST00000578954 PRIM1P49642 420 aaKnown RBP20.83■□□□□ 0.93
SS18-211ENST00000578954 RARSP54136 660 aaKnown RBP20.82■□□□□ 0.92
SS18-211ENST00000578954 SLC39A6Q13433 755 aa20.82■□□□□ 0.92
SS18-211ENST00000578954 KRT27Q7Z3Y8 459 aa20.82■□□□□ 0.92
SS18-211ENST00000578954 SBF2Q86WG5 1849 aa20.81■□□□□ 0.92
SS18-211ENST00000578954 ALDH1L2Q3SY69 923 aa20.81■□□□□ 0.92
SS18-211ENST00000578954 TTC5Q8N0Z6 440 aa20.81■□□□□ 0.92
SS18-211ENST00000578954 BRPF1P55201 1214 aaPredicted RBP20.8■□□□□ 0.92
SS18-211ENST00000578954 ATG3Q9NT62 314 aa20.8■□□□□ 0.92
SS18-211ENST00000578954 GIGYF1O75420 1035 aaPredicted RBP20.79■□□□□ 0.92
SS18-211ENST00000578954 ACSBG1Q96GR2 724 aa20.79■□□□□ 0.92
SS18-211ENST00000578954 ZNF496Q96IT1 587 aaPredicted RBP20.79■□□□□ 0.92
SS18-211ENST00000578954 FMNL2Q96PY5 1086 aa20.79■□□□□ 0.92
SS18-211ENST00000578954 ELL2O00472 640 aaPredicted RBP20.78■□□□□ 0.92
SS18-211ENST00000578954 KAT6BQ8WYB5 2073 aa20.77■□□□□ 0.92
SS18-211ENST00000578954 C5P01031 1676 aa20.77■□□□□ 0.92
SS18-211ENST00000578954 FAM196AQ6ZSG2 479 aa20.77■□□□□ 0.92
SS18-211ENST00000578954 SSH1Q8WYL5 1049 aa20.77■□□□□ 0.92
SS18-211ENST00000578954 SYTL4Q96C24 671 aaPredicted RBP20.77■□□□□ 0.92
SS18-211ENST00000578954 ASAP1Q9ULH1 1129 aa20.77■□□□□ 0.92
SS18-211ENST00000578954 SUPT16HQ9Y5B9 1047 aaKnown RBP20.77■□□□□ 0.92
SS18-211ENST00000578954 CICQ96RK0 1608 aaPredicted RBP20.77■□□□□ 0.92
SS18-211ENST00000578954 KCNQ2O43526 872 aa20.76■□□□□ 0.91
SS18-211ENST00000578954 CHMP4AQ9BY43 222 aa20.76■□□□□ 0.91
SS18-211ENST00000578954 LAMB4A4D0S4 1761 aa20.76■□□□□ 0.91
SS18-211ENST00000578954 SNRPA1P09661 255 aaKnown RBP20.75■□□□□ 0.91
SS18-211ENST00000578954 FAM182BQ5T319 152 aa20.75■□□□□ 0.91
SS18-211ENST00000578954 VSIG10Q8N0Z9 540 aa20.75■□□□□ 0.91
SS18-211ENST00000578954 BTAF1O14981 1849 aa20.75■□□□□ 0.91
SS18-211ENST00000578954 ZNF831Q5JPB2 1677 aa20.74■□□□□ 0.91
SS18-211ENST00000578954 BCAR3O75815 825 aa20.74■□□□□ 0.91
SS18-211ENST00000578954 RRP1P56182 461 aaKnown RBP20.74■□□□□ 0.91
SS18-211ENST00000578954 SMARCC1Q92922 1105 aaPredicted RBP20.74■□□□□ 0.91
SS18-211ENST00000578954 CCDC30Q5VVM6 783 aa20.73■□□□□ 0.91
SS18-211ENST00000578954 MRPL50Q8N5N7 158 aaKnown RBP20.73■□□□□ 0.91
SS18-211ENST00000578954 SMC4Q9NTJ3 1288 aa20.73■□□□□ 0.91
SS18-211ENST00000578954 CACNA1FO60840 1977 aa20.73■□□□□ 0.91
SS18-211ENST00000578954 HDGFL1Q5TGJ6 251 aa20.72■□□□□ 0.91
SS18-211ENST00000578954 BCL11BQ9C0K0 894 aaPredicted RBP20.72■□□□□ 0.91
SS18-211ENST00000578954 PALLDQ8WX93 1383 aa20.72■□□□□ 0.91
SS18-211ENST00000578954 PRAMEF22A3QJZ6 481 aa20.71■□□□□ 0.91
SS18-211ENST00000578954 PTF1AQ7RTS3 328 aa20.71■□□□□ 0.91
SS18-211ENST00000578954 KIF16BQ96L93 1317 aa20.71■□□□□ 0.91
SS18-211ENST00000578954 TJP1Q07157 1748 aa20.7■□□□□ 0.9
SS18-211ENST00000578954 PTCD1O75127 700 aaKnown RBP20.7■□□□□ 0.9
SS18-211ENST00000578954 SLC4A9Q96Q91 983 aa20.7■□□□□ 0.9
SS18-211ENST00000578954 BCL2L13Q9BXK5 485 aa20.7■□□□□ 0.9
SS18-211ENST00000578954 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.69■□□□□ 0.9
SS18-211ENST00000578954 TEX13AQ9BXU3 409 aaPredicted RBP20.69■□□□□ 0.9
SS18-211ENST00000578954 ERBB4Q15303 1308 aa20.69■□□□□ 0.9
SS18-211ENST00000578954 LY75O60449 1722 aa20.68■□□□□ 0.9
SS18-211ENST00000578954 STK31Q9BXU1 1019 aa20.68■□□□□ 0.9
SS18-211ENST00000578954 USP16Q9Y5T5 823 aa20.68■□□□□ 0.9
SS18-211ENST00000578954 ARHGAP45Q92619 1136 aa20.67■□□□□ 0.9
SS18-211ENST00000578954 LOC102724428A0A0B4J2F2 783 aa20.66■□□□□ 0.9
SS18-211ENST00000578954 EIF2S2P20042 333 aaKnown RBP20.66■□□□□ 0.9
SS18-211ENST00000578954 SIK1P57059 783 aa20.66■□□□□ 0.9
SS18-211ENST00000578954 RBM42Q9BTD8 480 aaKnown RBP20.66■□□□□ 0.9
SS18-211ENST00000578954 DBF4Q9UBU7 674 aaPredicted RBP20.66■□□□□ 0.9
SS18-211ENST00000578954 TCERG1O14776 1098 aaKnown RBP20.65■□□□□ 0.9
SS18-211ENST00000578954 SLC4A2P04920 1241 aa20.65■□□□□ 0.9
SS18-211ENST00000578954 PDIA6Q15084 440 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms